Wall clock time and date at job start Tue Mar 31 2020 13:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46812 * 2 1 4 4 O 1.42901 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.35715 * 116.99993 * 180.02562 * 4 3 2 6 6 C 1.39176 * 119.86072 * 0.02562 * 5 4 3 7 7 C 1.36549 * 120.37857 * 180.02562 * 6 5 4 8 8 C 1.39887 * 120.08011 * 0.02562 * 7 6 5 9 9 C 1.47202 * 120.14071 * 179.97438 * 8 7 6 10 10 O 1.21662 * 120.00057 * 143.44534 * 9 8 7 11 11 N 1.34775 * 120.00395 * 323.44803 * 9 8 7 12 12 C 1.36937 * 119.99527 * 8.88129 * 11 9 8 13 13 H 1.08000 * 120.00024 * 308.81215 * 12 11 9 14 14 C 1.38997 * 119.99679 * 128.81670 * 12 11 9 15 15 N 1.31398 * 120.00311 * 340.73463 * 14 12 11 16 16 Si 1.86802 * 119.99829 * 160.74239 * 14 12 11 17 17 H 1.48501 * 109.47161 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.46776 * 299.99625 * 16 14 12 19 19 H 1.48499 * 109.47574 * 59.99546 * 16 14 12 20 20 C 1.46497 * 120.00616 * 188.88003 * 11 9 8 21 21 C 1.52998 * 117.50138 * 180.72085 * 20 11 9 22 22 C 1.53005 * 117.49604 * 112.05815 * 20 11 9 23 23 C 1.40383 * 119.72142 * 0.25939 * 8 7 6 24 24 O 1.35654 * 120.18656 * 179.70049 * 23 8 7 25 25 C 1.42903 * 116.99877 * 179.97438 * 24 23 8 26 26 C 1.38465 * 119.62680 * 359.44992 * 23 8 7 27 27 H 1.08995 * 109.47541 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46731 * 299.99390 * 1 2 3 30 30 H 1.09004 * 109.46731 * 240.00610 * 2 1 3 31 31 H 1.08995 * 109.47541 * 120.00028 * 2 1 3 32 32 H 1.08995 * 109.47004 * 60.00480 * 3 2 1 33 33 H 1.08997 * 109.47504 * 299.99973 * 3 2 1 34 34 H 1.08005 * 119.81185 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.95776 * 179.97438 * 7 6 5 36 36 H 0.97002 * 119.99742 * 175.08448 * 15 14 12 37 37 H 1.09001 * 115.54984 * 326.39794 * 20 11 9 38 38 H 1.09003 * 117.50010 * 0.02562 * 21 20 11 39 39 H 1.09000 * 117.50085 * 145.02315 * 21 20 11 40 40 H 1.09000 * 117.49599 * 214.97828 * 22 20 11 41 41 H 1.08993 * 117.49907 * 359.97438 * 22 20 11 42 42 H 1.08998 * 109.47054 * 179.97438 * 25 24 23 43 43 H 1.08994 * 109.47518 * 300.00448 * 25 24 23 44 44 H 1.09007 * 109.47094 * 60.00549 * 25 24 23 45 45 H 1.08000 * 120.04330 * 180.27253 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0851 2.6518 -0.0001 6 6 3.3242 3.8172 0.0014 7 6 3.9331 5.0394 0.0014 8 6 5.3292 5.1272 -0.0008 9 6 5.9869 6.4441 -0.0014 10 8 7.0169 6.6099 0.6245 11 7 5.4482 7.4662 -0.6954 12 6 4.2022 7.3367 -1.2484 13 1 3.9722 6.4819 -1.8671 14 6 3.2336 8.3055 -1.0135 15 7 3.3570 9.1242 0.0068 16 14 1.7561 8.4433 -2.1481 17 1 0.8769 9.5466 -1.6843 18 1 2.2185 8.7262 -3.5307 19 1 0.9980 7.1665 -2.1313 20 6 6.1956 8.7156 -0.8580 21 6 5.5229 9.8443 -1.6419 22 6 6.6861 9.0675 -2.2640 23 6 6.1003 3.9541 -0.0084 24 8 7.4548 4.0283 -0.0167 25 6 8.1722 2.7924 -0.0236 26 6 5.4706 2.7210 -0.0022 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.2460 3.7544 0.0018 35 1 3.3360 5.9393 0.0022 36 1 2.7199 9.8452 0.1299 37 1 6.8317 8.9957 -0.0183 38 1 4.5240 9.6573 -2.0363 39 1 5.7166 10.8669 -1.3182 40 1 7.6446 9.5795 -2.3491 41 1 6.4531 8.3691 -3.0677 42 1 9.2433 2.9941 -0.0303 43 1 7.9157 2.2184 0.8668 44 1 7.9047 2.2220 -0.9132 45 1 6.0573 1.8142 -0.0036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294610626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:10 Heat of formation + Delta-G solvation = -62.152512 kcal Electronic energy + Delta-G solvation = -27503.439410 eV Core-core repulsion = 23680.679981 eV Total energy + Delta-G solvation = -3822.759428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69593 -40.44024 -39.89038 -37.88706 -37.37311 -35.08749 -34.66668 -33.28044 -31.42417 -30.92148 -28.09308 -27.51431 -27.06741 -24.59757 -23.53765 -23.03737 -22.58125 -21.84936 -21.13717 -19.80367 -18.83303 -18.09884 -17.48488 -17.27978 -17.18972 -16.85652 -16.63670 -16.41247 -15.79684 -15.56728 -15.30588 -15.00397 -14.85950 -14.68553 -14.15333 -13.84746 -13.72847 -13.54582 -13.32031 -13.21481 -13.01982 -12.90203 -12.62509 -12.46644 -12.41324 -12.28426 -12.08836 -12.06130 -11.78762 -11.72583 -11.50967 -11.33609 -11.06904 -10.65658 -10.30384 -9.57352 -9.18690 -8.95768 -8.20799 -6.09774 0.16891 0.48134 1.44682 1.49523 1.56760 2.05315 2.09869 2.31865 2.46183 2.79151 2.88814 3.07722 3.42551 3.84656 3.96396 3.98234 4.10165 4.16374 4.20039 4.22934 4.33511 4.34861 4.38454 4.39543 4.47981 4.51051 4.57869 4.65555 4.72598 4.79621 4.84920 4.86941 5.00260 5.13435 5.17463 5.21032 5.29833 5.35277 5.37878 5.48839 5.50726 5.54748 5.69992 6.21173 6.32820 6.45622 6.52832 7.14081 7.61871 8.09344 8.79236 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.004915 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.355128 B = 5695.968360 C = 7837.002923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.045 3.955 4 O -0.317 6.317 5 C 0.186 3.814 6 C -0.258 4.258 7 C 0.005 3.995 8 C -0.208 4.208 9 C 0.524 3.476 10 O -0.625 6.625 11 N -0.424 5.424 12 C -0.358 4.358 13 H 0.084 0.916 14 C 0.031 3.969 15 N -0.873 5.873 16 Si 0.954 3.046 17 H -0.282 1.282 18 H -0.267 1.267 19 H -0.257 1.257 20 C 0.074 3.926 21 C -0.140 4.140 22 C -0.188 4.188 23 C 0.194 3.806 24 O -0.321 6.321 25 C 0.014 3.986 26 C -0.260 4.260 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.272 0.728 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -14.857 -3.087 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.029 4.029 4 O -0.231 6.231 5 C 0.139 3.861 6 C -0.276 4.276 7 C -0.013 4.013 8 C -0.212 4.212 9 C 0.316 3.684 10 O -0.512 6.512 11 N -0.142 5.142 12 C -0.485 4.485 13 H 0.101 0.899 14 C -0.175 4.175 15 N -0.507 5.507 16 Si 0.777 3.223 17 H -0.207 1.207 18 H -0.192 1.192 19 H -0.181 1.181 20 C -0.031 4.031 21 C -0.178 4.178 22 C -0.226 4.226 23 C 0.146 3.854 24 O -0.233 6.233 25 C -0.080 4.080 26 C -0.279 4.279 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.179 -14.665 -2.642 15.476 hybrid contribution -0.597 0.602 -0.241 0.882 sum -4.776 -14.063 -2.883 15.129 Atomic orbital electron populations 1.21695 0.92932 1.03274 1.02614 1.21492 0.97033 0.93276 1.03713 1.23242 0.76690 1.00455 1.02517 1.85954 1.23227 1.26190 1.87706 1.18827 0.91371 0.84418 0.91490 1.21061 1.01188 0.91207 1.14193 1.21454 0.92443 0.99152 0.88293 1.19263 0.94197 0.91372 1.16335 1.18608 0.84577 0.85995 0.79213 1.90570 1.28669 1.85377 1.46608 1.42759 1.15137 1.10316 1.45955 1.19243 0.86745 1.12128 1.30409 0.89850 1.26028 0.99607 0.96503 0.95406 1.70174 1.38160 1.17100 1.25279 0.85614 0.78562 0.78857 0.79261 1.20686 1.19218 1.18128 1.21207 0.99198 0.88982 0.93700 1.23014 0.97439 0.94904 1.02428 1.23363 0.98932 1.03868 0.96467 1.18805 0.82863 0.92229 0.91510 1.86265 1.15035 1.34773 1.87247 1.23424 0.97407 0.84513 1.02617 1.20307 0.92972 0.96678 1.17927 0.92082 0.90606 0.92080 0.90757 0.90778 0.91194 0.91178 0.83100 0.83219 0.91860 0.90094 0.88637 0.88981 0.87434 0.89733 0.86727 0.91252 0.91019 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.77 6.30 30.59 0.19 -1.57 16 3 C 0.05 0.92 4.73 71.98 0.34 1.26 16 4 O -0.32 -8.55 10.12 -90.36 -0.91 -9.46 16 5 C 0.19 6.00 6.69 22.61 0.15 6.15 16 6 C -0.26 -8.84 8.96 22.10 0.20 -8.65 16 7 C 0.01 0.22 7.84 22.27 0.17 0.39 16 8 C -0.21 -9.95 5.53 -20.00 -0.11 -10.06 16 9 C 0.52 29.13 7.18 86.60 0.62 29.75 16 10 O -0.62 -37.97 15.80 12.22 0.19 -37.78 16 11 N -0.42 -22.75 2.72 -617.03 -1.68 -24.43 16 12 C -0.36 -18.04 5.34 84.08 0.45 -17.59 16 13 H 0.08 4.15 6.80 -2.91 -0.02 4.13 16 14 C 0.03 1.48 2.82 84.94 0.24 1.72 16 15 N -0.87 -45.41 12.00 21.67 0.26 -45.15 16 16 Si 0.95 37.53 29.21 68.60 2.00 39.53 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 20 C 0.07 3.74 5.65 44.99 0.25 3.99 16 21 C -0.14 -6.17 8.48 30.62 0.26 -5.91 16 22 C -0.19 -7.79 10.40 30.62 0.32 -7.48 16 23 C 0.19 8.08 6.66 22.85 0.15 8.24 16 24 O -0.32 -13.18 9.18 -73.25 -0.67 -13.85 16 25 C 0.01 0.38 9.81 113.37 1.11 1.49 16 26 C -0.26 -8.74 8.97 22.44 0.20 -8.54 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.35 7.64 -2.39 -0.02 1.33 16 33 H 0.07 1.35 7.65 -2.39 -0.02 1.34 16 34 H 0.15 4.24 6.26 -2.91 -0.02 4.22 16 35 H 0.15 6.98 5.43 -2.91 -0.02 6.96 16 36 H 0.27 13.34 8.32 -92.71 -0.77 12.57 16 37 H 0.08 4.35 7.77 -2.39 -0.02 4.33 16 38 H 0.10 4.45 4.95 -2.39 -0.01 4.44 16 39 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.08 3.54 8.14 -2.39 -0.02 3.53 16 42 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 1.56 7.65 -2.39 -0.02 1.54 16 44 H 0.07 1.56 7.68 -2.38 -0.02 1.54 16 45 H 0.16 4.34 6.31 -2.91 -0.02 4.32 16 Total: -1.00 -68.86 365.36 5.46 -63.40 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 1.00 Total: 35.54 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.27 Total: -7.80 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -1.42 Total: -69.58 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -1.39 Total: -61.09 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.00 Total: 39.53 kcal Total: -68.86 5.46 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294610626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.248 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds