Wall clock time and date at job start Tue Mar 31 2020 13:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46638 * 2 1 4 4 O 1.42899 * 109.47101 * 239.99861 * 2 1 3 5 5 C 1.52999 * 109.47037 * 119.99829 * 2 1 3 6 6 H 1.09005 * 109.70099 * 60.32617 * 5 2 1 7 7 C 1.52764 * 109.50836 * 300.20932 * 5 2 1 8 8 C 1.53039 * 109.38146 * 185.70797 * 7 5 2 9 9 H 1.09006 * 109.44957 * 301.22517 * 8 7 5 10 10 C 1.53002 * 109.46008 * 181.25981 * 8 7 5 11 11 C 1.53040 * 109.54310 * 61.23873 * 8 7 5 12 12 C 1.53197 * 109.30985 * 298.63875 * 11 8 7 13 13 N 1.46922 * 108.77881 * 54.63005 * 12 11 8 14 14 S 1.65603 * 120.63344 * 126.36878 * 13 12 11 15 15 O 1.42108 * 104.27395 * 340.16350 * 14 13 12 16 16 O 1.42096 * 104.27732 * 212.31083 * 14 13 12 17 17 C 1.81389 * 104.44927 * 96.23398 * 14 13 12 18 18 C 1.52997 * 109.47307 * 174.12036 * 17 14 13 19 19 C 1.53004 * 109.47432 * 180.02562 * 18 17 14 20 20 C 1.50707 * 109.46975 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99937 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99626 * 179.72181 * 20 19 18 23 23 N 1.31514 * 120.00072 * 180.27922 * 22 20 19 24 24 Si 1.86802 * 120.00174 * 0.27958 * 22 20 19 25 25 H 1.48495 * 109.47426 * 89.99810 * 24 22 20 26 26 H 1.48506 * 109.46911 * 209.99924 * 24 22 20 27 27 H 1.48501 * 109.46971 * 329.99598 * 24 22 20 28 28 H 1.08997 * 109.47314 * 305.13192 * 1 2 3 29 29 H 1.08999 * 109.47214 * 65.13455 * 1 2 3 30 30 H 1.09006 * 109.46578 * 185.13223 * 1 2 3 31 31 H 0.96701 * 114.00127 * 295.52856 * 4 2 1 32 32 H 1.09004 * 109.56729 * 65.67185 * 7 5 2 33 33 H 1.08997 * 109.36317 * 305.61558 * 7 5 2 34 34 H 1.08998 * 109.47348 * 299.93033 * 10 8 7 35 35 H 1.09006 * 109.46867 * 59.93393 * 10 8 7 36 36 H 1.09002 * 109.47282 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.50284 * 178.68596 * 11 8 7 38 38 H 1.09005 * 109.49155 * 58.58140 * 11 8 7 39 39 H 1.09000 * 109.58382 * 294.84261 * 12 11 8 40 40 H 1.09000 * 109.58567 * 174.42068 * 12 11 8 41 41 H 1.08997 * 109.47405 * 54.11620 * 17 14 13 42 42 H 1.09000 * 109.47344 * 294.11917 * 17 14 13 43 43 H 1.08999 * 109.47702 * 59.99705 * 18 17 14 44 44 H 1.09000 * 109.46822 * 300.00201 * 18 17 14 45 45 H 1.09000 * 109.47074 * 60.00104 * 19 18 17 46 46 H 1.08994 * 109.46873 * 299.99507 * 19 18 17 47 47 H 0.97002 * 120.00445 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7212 1.2493 6 1 1.6835 -1.7513 1.2502 7 6 1.5270 -0.0047 2.4971 8 6 2.1523 -0.6404 3.7409 9 1 1.8957 -1.6992 3.7754 10 6 1.6156 0.0553 4.9935 11 6 3.6739 -0.4863 3.6846 12 6 4.2113 -1.2133 2.4479 13 7 3.5092 -0.7085 1.2601 14 16 4.3575 -0.1296 -0.0390 15 8 5.6424 0.1722 0.4878 16 8 3.5265 0.8917 -0.5733 17 6 4.4520 -1.5358 -1.1809 18 6 5.0919 -1.0837 -2.4950 19 6 5.1710 -2.2697 -3.4584 20 6 5.8008 -1.8241 -4.7530 21 1 6.1137 -0.7978 -4.8761 22 6 5.9831 -2.7281 -5.7779 23 7 6.5377 -2.3406 -6.9056 24 14 5.4425 -4.5034 -5.5646 25 1 4.0361 -4.6505 -6.0181 26 1 6.3187 -5.3883 -6.3738 27 1 5.5431 -4.8828 -4.1324 28 1 -0.3634 0.5914 0.8404 29 1 -0.3633 0.4321 -0.9324 30 1 -0.3633 -1.0236 0.0919 31 1 1.7786 -1.6129 -1.1992 32 1 0.4419 -0.0942 2.5493 33 1 1.8038 1.0484 2.4486 34 1 1.8726 1.1140 4.9594 35 1 0.5318 -0.0544 5.0338 36 1 2.0605 -0.3976 5.8795 37 1 4.1169 -0.9184 4.5818 38 1 3.9304 0.5715 3.6248 39 1 4.0355 -2.2843 2.5486 40 1 5.2802 -1.0242 2.3485 41 1 3.4483 -1.9132 -1.3764 42 1 5.0566 -2.3258 -0.7353 43 1 6.0956 -0.7064 -2.2995 44 1 4.4873 -0.2938 -2.9406 45 1 4.1671 -2.6465 -3.6539 46 1 5.7754 -3.0598 -3.0130 47 1 6.6664 -2.9767 -7.6266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331280003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:49 Heat of formation + Delta-G solvation = -121.580302 kcal Electronic energy + Delta-G solvation = -27154.650402 eV Core-core repulsion = 23464.757943 eV Total energy + Delta-G solvation = -3689.892459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87251 -37.74473 -36.24293 -35.58263 -34.67532 -33.87304 -32.62261 -32.08478 -29.50016 -28.21265 -27.76467 -24.53773 -23.53611 -22.98155 -21.67667 -20.55437 -20.25197 -18.84372 -17.63821 -16.88122 -16.60249 -16.26161 -15.68952 -15.63074 -14.97423 -14.74277 -14.43228 -14.20751 -14.10890 -14.02595 -13.86478 -13.57226 -12.86324 -12.78574 -12.44631 -12.32186 -12.22033 -12.18194 -12.03413 -11.83400 -11.72389 -11.66683 -11.40908 -11.40701 -11.24942 -11.04610 -10.83770 -10.83291 -10.67132 -10.10481 -9.88846 -9.83375 -9.76188 -9.61409 -9.21168 -8.96275 -8.53643 -6.03322 -4.01673 0.59544 2.78532 3.29554 3.36723 3.39351 4.03011 4.07073 4.20671 4.36204 4.44661 4.50470 4.56052 4.68267 4.84287 4.93161 4.99751 5.11332 5.21675 5.24985 5.26263 5.28758 5.31191 5.33369 5.41970 5.45224 5.51715 5.58052 5.58698 5.73186 5.80759 5.83128 5.95597 5.97081 6.04653 6.10882 6.28262 6.32799 6.46090 6.56400 6.80943 7.22623 7.37200 7.53330 7.77800 8.54322 9.02038 9.58231 11.10251 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021862 B = 0.003598 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.452856 B = 7780.114097 C = 8111.375839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 H 0.159 0.841 4 O -0.546 6.546 5 C 0.125 3.875 6 H 0.073 0.927 7 C -0.121 4.121 8 C -0.090 4.090 9 H 0.071 0.929 10 C -0.147 4.147 11 C -0.127 4.127 12 C 0.115 3.885 13 N -1.000 6.000 14 S 2.607 3.393 15 O -0.976 6.976 16 O -0.942 6.942 17 C -0.605 4.605 18 C -0.092 4.092 19 C -0.002 4.002 20 C -0.523 4.523 21 H 0.074 0.926 22 C 0.066 3.934 23 N -0.902 5.902 24 Si 0.881 3.119 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.266 1.266 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.365 0.635 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.015 0.985 46 H 0.017 0.983 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 1.188 24.763 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.004 3.996 3 H 0.175 0.825 4 O -0.353 6.353 5 C 0.018 3.982 6 H 0.091 0.909 7 C -0.160 4.160 8 C -0.109 4.109 9 H 0.089 0.911 10 C -0.204 4.204 11 C -0.166 4.166 12 C -0.010 4.010 13 N -0.837 5.837 14 S 2.707 3.293 15 O -0.966 6.966 16 O -0.932 6.932 17 C -0.736 4.736 18 C -0.131 4.131 19 C -0.041 4.041 20 C -0.561 4.561 21 H 0.092 0.908 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.708 3.292 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.191 1.191 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.214 0.786 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.889 2.600 24.396 27.714 hybrid contribution -0.675 -2.357 0.042 2.452 sum -13.564 0.244 24.438 27.951 Atomic orbital electron populations 1.22508 0.95986 1.02172 1.03233 1.23186 0.93468 1.00907 0.82044 0.82456 1.87050 1.78257 1.26165 1.43816 1.21728 0.79639 0.99934 0.96860 0.90916 1.21899 1.00218 1.00584 0.93321 1.21086 0.95173 1.00071 0.94579 0.91100 1.21829 1.00740 1.00745 0.97104 1.21940 0.95351 1.01681 0.97646 1.21442 0.97469 0.97760 0.84315 1.57903 1.13955 1.81126 1.30671 1.05164 0.72713 0.77451 0.74014 1.93518 1.41661 1.83650 1.77811 1.93516 1.65174 1.54936 1.79570 1.30806 1.10681 1.18687 1.13452 1.21222 0.99301 1.01478 0.91114 1.19506 0.96680 0.93297 0.94629 1.21170 1.39796 0.98396 0.96778 0.90803 1.25028 0.94696 0.98713 0.95063 1.69916 1.44149 1.35224 1.04854 0.86770 0.78733 0.85232 0.78471 1.20261 1.21372 1.19088 0.91471 0.91036 0.92723 0.78627 0.90534 0.90987 0.92607 0.92693 0.92646 0.90838 0.91304 0.91687 0.88455 0.84517 0.86868 0.91944 0.90635 0.96624 0.96515 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 9.05 37.16 0.34 -1.13 16 2 C 0.06 0.68 2.26 -26.73 -0.06 0.62 16 3 H 0.16 2.09 5.65 -53.03 -0.30 1.79 16 4 O -0.55 -6.73 8.10 -59.60 -0.48 -7.22 16 5 C 0.13 1.12 2.67 -67.82 -0.18 0.94 16 6 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 7 C -0.12 -0.92 4.10 -26.83 -0.11 -1.03 16 8 C -0.09 -0.62 2.68 -90.58 -0.24 -0.87 16 9 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 10 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 11 C -0.13 -1.02 5.36 -26.61 -0.14 -1.16 16 12 C 0.12 1.09 6.46 -3.71 -0.02 1.07 16 13 N -1.00 -10.99 3.22 -106.71 -0.34 -11.33 16 14 S 2.61 39.42 4.78 -107.50 -0.51 38.90 16 15 O -0.98 -17.68 16.42 -57.54 -0.94 -18.62 16 16 O -0.94 -16.06 12.27 -67.21 -0.82 -16.88 16 17 C -0.60 -9.30 5.49 37.16 0.20 -9.09 16 18 C -0.09 -1.88 5.16 -26.73 -0.14 -2.02 16 19 C 0.00 -0.06 4.04 -27.88 -0.11 -0.17 16 20 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 21 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 24 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 28 H 0.07 0.45 6.85 -51.93 -0.36 0.09 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.37 3.13 7.77 45.56 0.35 3.48 16 32 H 0.08 0.46 6.87 -51.93 -0.36 0.10 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.04 6.71 -51.93 -0.35 0.69 16 41 H 0.14 1.78 4.86 -51.93 -0.25 1.53 16 42 H 0.11 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.02 0.36 7.58 -51.93 -0.39 -0.03 16 46 H 0.02 0.39 7.19 -51.93 -0.37 0.02 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -35.77 362.34 -9.64 -45.41 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.53 Total: 1.77 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: -0.56 Total: -27.09 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.43 Total: -38.79 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -2.25 Total: -42.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: 39.42 SS G_CDS: -0.51 Total: 38.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.77 -9.64 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331280003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.175 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds