Wall clock time and date at job start Tue Mar 31 2020 13:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53076 * 1 3 3 H 1.10916 * 106.80378 * 2 1 4 4 C 1.52590 * 109.98833 * 244.05751 * 2 1 3 5 5 C 1.53000 * 110.09481 * 281.94130 * 4 2 1 6 6 H 1.08731 * 110.28496 * 61.70848 * 5 4 2 7 7 C 1.53239 * 109.31862 * 181.73005 * 5 4 2 8 8 C 1.53002 * 109.46987 * 184.99778 * 7 5 4 9 9 N 1.46495 * 109.47154 * 180.02562 * 8 7 5 10 10 S 1.65600 * 119.99840 * 165.00128 * 9 8 7 11 11 O 1.42100 * 104.27836 * 181.06796 * 10 9 8 12 12 O 1.42099 * 104.28137 * 308.92853 * 10 9 8 13 13 C 1.81405 * 104.45027 * 65.00045 * 10 9 8 14 14 C 1.53001 * 109.47160 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47352 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99639 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00380 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99957 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00222 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47138 * 90.00124 * 19 17 15 21 21 H 1.48494 * 109.47563 * 210.00224 * 19 17 15 22 22 H 1.48503 * 109.47361 * 330.00396 * 19 17 15 23 23 C 1.52991 * 108.44141 * 300.84579 * 5 4 2 24 24 C 1.52566 * 110.09307 * 59.20003 * 23 5 4 25 25 H 1.10914 * 107.16479 * 193.69520 * 24 23 5 26 26 C 1.53078 * 109.99052 * 77.95371 * 24 23 5 27 27 O 1.40758 * 111.57052 * 117.67748 * 2 1 3 28 28 H 1.09001 * 109.46796 * 175.94221 * 1 2 3 29 29 H 1.09001 * 109.47034 * 295.93835 * 1 2 3 30 30 H 1.09000 * 109.47020 * 55.94130 * 1 2 3 31 31 H 1.09228 * 109.56359 * 42.22520 * 4 2 1 32 32 H 1.09219 * 109.58033 * 161.62149 * 4 2 1 33 33 H 1.08993 * 109.47492 * 304.99819 * 7 5 4 34 34 H 1.09005 * 109.47028 * 65.00612 * 7 5 4 35 35 H 1.09000 * 109.47405 * 300.00392 * 8 7 5 36 36 H 1.08997 * 109.46890 * 59.99773 * 8 7 5 37 37 H 0.96998 * 120.00331 * 345.00165 * 9 8 7 38 38 H 1.09001 * 109.46926 * 299.99840 * 13 10 9 39 39 H 1.08998 * 109.47167 * 59.99890 * 13 10 9 40 40 H 1.09001 * 109.47213 * 299.99839 * 14 13 10 41 41 H 1.08998 * 109.47028 * 59.99979 * 14 13 10 42 42 H 0.96999 * 120.00157 * 180.02562 * 18 17 15 43 43 H 1.09229 * 109.34845 * 179.63958 * 23 5 4 44 44 H 1.09228 * 109.35217 * 298.75772 * 23 5 4 45 45 H 1.08998 * 109.47217 * 60.00288 * 26 24 23 46 46 H 1.09001 * 109.47391 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.47035 * 300.00491 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8514 1.0618 0.0000 4 6 2.0524 -0.6273 -1.2895 5 6 1.9527 -2.1520 -1.2101 6 1 0.9149 -2.4566 -1.0978 7 6 2.5203 -2.7647 -2.4948 8 6 2.3094 -4.2800 -2.4737 9 7 2.8526 -4.8658 -3.7016 10 16 3.1044 -6.4997 -3.7984 11 8 3.6502 -6.6939 -5.0960 12 8 3.8572 -6.8081 -2.6333 13 6 1.4432 -7.2208 -3.6923 14 6 1.5430 -8.7455 -3.7719 15 6 0.1631 -9.3446 -3.6831 16 1 -0.6990 -8.7020 -3.5806 17 6 0.0009 -10.7128 -3.7339 18 7 1.0506 -11.4951 -3.8592 19 14 -1.7095 -11.4554 -3.6230 20 1 -2.2816 -11.5864 -4.9872 21 1 -1.6271 -12.7961 -2.9900 22 1 -2.5798 -10.5739 -2.8040 23 6 2.7782 -2.6294 -0.0138 24 6 2.2534 -1.9961 1.2713 25 1 3.0189 -2.1654 2.0559 26 6 0.9832 -2.7173 1.7293 27 8 2.0483 -0.6080 1.1592 28 1 -0.3633 -1.0251 -0.0727 29 1 -0.3633 0.4495 0.9242 30 1 -0.3633 0.5755 -0.8514 31 1 1.4611 -0.2697 -2.1354 32 1 3.0952 -0.3400 -1.4406 33 1 2.0085 -2.3387 -3.3576 34 1 3.5864 -2.5473 -2.5608 35 1 2.8213 -4.7061 -1.6108 36 1 1.2434 -4.4975 -2.4076 37 1 3.0649 -4.2968 -4.4579 38 1 0.9830 -6.9354 -2.7463 39 1 0.8342 -6.8533 -4.5181 40 1 2.0030 -9.0306 -4.7181 41 1 2.1522 -9.1133 -2.9463 42 1 0.9365 -12.4577 -3.8953 43 1 2.7120 -3.7171 0.0607 44 1 3.8235 -2.3482 -0.1600 45 1 1.2081 -3.7679 1.9131 46 1 0.6155 -2.2582 2.6470 47 1 0.2213 -2.6392 0.9537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338430899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:51 Heat of formation + Delta-G solvation = -155.884140 kcal Electronic energy + Delta-G solvation = -25531.997698 eV Core-core repulsion = 21840.617712 eV Total energy + Delta-G solvation = -3691.379985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26404 -36.87031 -36.46334 -35.44392 -34.15107 -33.90770 -33.70843 -31.17709 -30.65338 -28.23536 -26.63905 -25.61670 -24.04450 -23.07998 -21.81833 -21.44067 -18.93728 -18.82358 -17.47945 -16.72381 -16.60907 -16.28989 -15.96047 -15.48532 -15.30299 -15.13877 -14.65133 -14.55163 -14.49326 -14.28406 -13.41216 -13.19597 -13.04344 -12.82133 -12.62634 -12.52588 -12.50130 -12.20189 -11.87695 -11.74413 -11.61202 -11.55042 -11.46121 -11.42099 -11.19613 -11.09757 -11.02783 -10.97269 -10.53244 -10.42551 -10.39750 -10.10123 -9.80127 -9.66296 -9.49326 -9.03285 -8.51904 -6.13988 -4.19719 0.78507 3.12736 3.24727 3.31039 3.33570 3.37432 4.20433 4.30074 4.34497 4.37067 4.42743 4.51973 4.66547 4.70887 4.85375 4.92268 5.00033 5.10464 5.13287 5.21172 5.21632 5.25926 5.28996 5.37861 5.44780 5.55347 5.57697 5.61851 5.63919 5.65586 5.71077 5.72069 5.86550 5.90791 5.91385 6.01439 6.05248 6.13777 6.46923 7.07964 7.28573 7.34846 7.49394 7.78855 8.15910 8.83689 9.45154 10.97070 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002864 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.892496 B = 9775.233439 C =10832.446658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.088 4.088 6 H 0.080 0.920 7 C -0.119 4.119 8 C 0.112 3.888 9 N -1.129 6.129 10 S 2.593 3.407 11 O -0.968 6.968 12 O -0.967 6.967 13 C -0.590 4.590 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.153 4.153 24 C 0.101 3.899 25 H 0.091 0.909 26 C -0.182 4.182 27 O -0.381 6.381 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 24.004 7.122 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.045 3.955 3 H 0.106 0.894 4 C -0.183 4.183 5 C -0.107 4.107 6 H 0.098 0.902 7 C -0.158 4.158 8 C -0.014 4.014 9 N -0.886 5.886 10 S 2.691 3.309 11 O -0.959 6.959 12 O -0.957 6.957 13 C -0.723 4.723 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.191 4.191 24 C 0.044 3.956 25 H 0.109 0.891 26 C -0.240 4.240 27 O -0.300 6.300 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.244 0.756 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.243 23.408 7.330 24.560 hybrid contribution -1.694 -0.371 -0.548 1.819 sum -0.451 23.037 6.782 24.019 Atomic orbital electron populations 1.22503 0.96548 1.02532 1.02281 1.21780 0.92873 0.96176 0.84699 0.89421 1.22185 1.02425 0.95531 0.98166 1.21041 1.00384 0.94791 0.94468 0.90187 1.21864 1.02156 0.94112 0.97701 1.21346 0.98598 0.94501 0.86978 1.55789 1.82529 1.27397 1.22866 1.05522 0.78643 0.72713 0.74068 1.93552 1.77589 1.84154 1.40580 1.93535 1.68500 1.82834 1.50854 1.30443 1.19940 1.11888 1.10024 1.18963 0.99968 0.83331 0.98872 1.21002 0.91767 0.91624 1.51641 0.92069 1.25068 0.97288 0.97231 0.94903 1.69954 1.29234 1.04456 1.49189 0.86468 0.83887 0.78594 0.78317 1.20466 1.20989 1.19764 1.22313 1.00301 1.01991 0.94499 1.21821 0.96677 0.80293 0.96805 0.89128 1.22511 0.98681 1.00906 1.01859 1.86400 1.83633 1.21747 1.38257 0.92294 0.92016 0.91750 0.90630 0.91110 0.91017 0.90944 0.90136 0.91815 0.75553 0.86392 0.86135 0.94829 0.94803 0.92509 0.89851 0.90922 0.91284 0.92056 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.36 37.20 0.35 -0.88 16 2 C 0.10 0.76 3.43 -26.90 -0.09 0.67 16 3 H 0.09 0.58 8.28 -50.83 -0.42 0.16 16 4 C -0.15 -0.98 4.77 -26.94 -0.13 -1.11 16 5 C -0.09 -0.66 2.10 -90.50 -0.19 -0.85 16 6 H 0.08 0.61 6.53 -52.08 -0.34 0.27 16 7 C -0.12 -0.95 4.81 -26.61 -0.13 -1.08 16 8 C 0.11 1.17 5.91 -4.04 -0.02 1.15 16 9 N -1.13 -13.91 5.89 -10.62 -0.06 -13.97 16 10 S 2.59 45.45 5.46 -107.50 -0.59 44.87 16 11 O -0.97 -19.96 18.08 -57.54 -1.04 -21.00 16 12 O -0.97 -19.78 17.50 -57.54 -1.01 -20.79 16 13 C -0.59 -11.07 6.01 37.16 0.22 -10.84 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.15 -1.26 4.53 -26.96 -0.12 -1.38 16 24 C 0.10 0.85 3.43 -26.91 -0.09 0.76 16 25 H 0.09 0.72 8.28 -50.83 -0.42 0.30 16 26 C -0.18 -1.46 9.36 37.20 0.35 -1.11 16 27 O -0.38 -3.58 9.72 -33.75 -0.33 -3.91 16 28 H 0.06 0.43 5.81 -51.93 -0.30 0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.44 8.05 -51.80 -0.42 0.02 16 32 H 0.07 0.48 8.16 -51.81 -0.42 0.06 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.90 6.18 -51.93 -0.32 0.58 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 4.22 8.62 -34.47 -0.30 3.92 16 38 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 39 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.08 0.70 6.56 -51.80 -0.34 0.36 16 44 H 0.07 0.60 8.16 -51.80 -0.42 0.18 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.46 5.80 -51.93 -0.30 0.16 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -34.76 380.08 -10.18 -44.95 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.20 Total: 0.96 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -0.41 Total: -27.23 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.67 Total: -39.66 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -2.37 Total: -45.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 45.45 SS G_CDS: -0.59 Total: 44.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.76 -10.18 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338430899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.938 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds