Wall clock time and date at job start Tue Mar 31 2020 13:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53076 * 1 3 3 H 1.10916 * 106.80378 * 2 1 4 4 C 1.52590 * 109.98833 * 244.05751 * 2 1 3 5 5 C 1.53000 * 110.09481 * 281.94130 * 4 2 1 6 6 H 1.08731 * 110.28496 * 61.70848 * 5 4 2 7 7 C 1.53239 * 109.31862 * 181.73005 * 5 4 2 8 8 C 1.53002 * 109.46987 * 184.99778 * 7 5 4 9 9 N 1.46495 * 109.47154 * 180.02562 * 8 7 5 10 10 S 1.65600 * 119.99840 * 165.00128 * 9 8 7 11 11 O 1.42100 * 104.27836 * 181.06796 * 10 9 8 12 12 O 1.42099 * 104.28137 * 308.92853 * 10 9 8 13 13 C 1.81405 * 104.45027 * 65.00045 * 10 9 8 14 14 C 1.53001 * 109.47160 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47352 * 179.97438 * 14 13 10 16 16 H 1.08008 * 119.99639 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00380 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99957 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00222 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47138 * 90.00124 * 19 17 15 21 21 H 1.48494 * 109.47563 * 210.00224 * 19 17 15 22 22 H 1.48503 * 109.47361 * 330.00396 * 19 17 15 23 23 C 1.52991 * 108.44141 * 300.84579 * 5 4 2 24 24 C 1.52566 * 110.09307 * 59.20003 * 23 5 4 25 25 H 1.10914 * 107.16479 * 193.69520 * 24 23 5 26 26 C 1.53078 * 109.99052 * 77.95371 * 24 23 5 27 27 O 1.40758 * 111.57052 * 117.67748 * 2 1 3 28 28 H 1.09001 * 109.46796 * 175.94221 * 1 2 3 29 29 H 1.09001 * 109.47034 * 295.93835 * 1 2 3 30 30 H 1.09000 * 109.47020 * 55.94130 * 1 2 3 31 31 H 1.09228 * 109.56359 * 42.22520 * 4 2 1 32 32 H 1.09219 * 109.58033 * 161.62149 * 4 2 1 33 33 H 1.08993 * 109.47492 * 304.99819 * 7 5 4 34 34 H 1.09005 * 109.47028 * 65.00612 * 7 5 4 35 35 H 1.09000 * 109.47405 * 300.00392 * 8 7 5 36 36 H 1.08997 * 109.46890 * 59.99773 * 8 7 5 37 37 H 0.96998 * 120.00331 * 345.00165 * 9 8 7 38 38 H 1.09001 * 109.46926 * 299.99840 * 13 10 9 39 39 H 1.08998 * 109.47167 * 59.99890 * 13 10 9 40 40 H 1.09001 * 109.47213 * 299.99839 * 14 13 10 41 41 H 1.08998 * 109.47028 * 59.99979 * 14 13 10 42 42 H 0.96999 * 120.00157 * 180.02562 * 18 17 15 43 43 H 1.09229 * 109.34845 * 179.63958 * 23 5 4 44 44 H 1.09228 * 109.35217 * 298.75772 * 23 5 4 45 45 H 1.08998 * 109.47217 * 60.00288 * 26 24 23 46 46 H 1.09001 * 109.47391 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.47035 * 300.00491 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8514 1.0618 0.0000 4 6 2.0524 -0.6273 -1.2895 5 6 1.9527 -2.1520 -1.2101 6 1 0.9149 -2.4566 -1.0978 7 6 2.5203 -2.7647 -2.4948 8 6 2.3094 -4.2800 -2.4737 9 7 2.8526 -4.8658 -3.7016 10 16 3.1044 -6.4997 -3.7984 11 8 3.6502 -6.6939 -5.0960 12 8 3.8572 -6.8081 -2.6333 13 6 1.4432 -7.2208 -3.6923 14 6 1.5430 -8.7455 -3.7719 15 6 0.1631 -9.3446 -3.6831 16 1 -0.6990 -8.7020 -3.5806 17 6 0.0009 -10.7128 -3.7339 18 7 1.0506 -11.4951 -3.8592 19 14 -1.7095 -11.4554 -3.6230 20 1 -2.2816 -11.5864 -4.9872 21 1 -1.6271 -12.7961 -2.9900 22 1 -2.5798 -10.5739 -2.8040 23 6 2.7782 -2.6294 -0.0138 24 6 2.2534 -1.9961 1.2713 25 1 3.0189 -2.1654 2.0559 26 6 0.9832 -2.7173 1.7293 27 8 2.0483 -0.6080 1.1592 28 1 -0.3633 -1.0251 -0.0727 29 1 -0.3633 0.4495 0.9242 30 1 -0.3633 0.5755 -0.8514 31 1 1.4611 -0.2697 -2.1354 32 1 3.0952 -0.3400 -1.4406 33 1 2.0085 -2.3387 -3.3576 34 1 3.5864 -2.5473 -2.5608 35 1 2.8213 -4.7061 -1.6108 36 1 1.2434 -4.4975 -2.4076 37 1 3.0649 -4.2968 -4.4579 38 1 0.9830 -6.9354 -2.7463 39 1 0.8342 -6.8533 -4.5181 40 1 2.0030 -9.0306 -4.7181 41 1 2.1522 -9.1133 -2.9463 42 1 0.9365 -12.4577 -3.8953 43 1 2.7120 -3.7171 0.0607 44 1 3.8235 -2.3482 -0.1600 45 1 1.2081 -3.7679 1.9131 46 1 0.6155 -2.2582 2.6470 47 1 0.2213 -2.6392 0.9537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338430899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:50 Heat of formation + Delta-G solvation = -180.710290 kcal Electronic energy + Delta-G solvation = -25533.074240 eV Core-core repulsion = 21840.617712 eV Total energy + Delta-G solvation = -3692.456528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87451 -38.19264 -37.49770 -36.98969 -35.89129 -34.97454 -34.29880 -33.12115 -31.32462 -28.94588 -27.58916 -27.22460 -24.77214 -23.70802 -23.59387 -22.23854 -20.29101 -19.41572 -19.08632 -18.24161 -17.55306 -17.20072 -17.03859 -16.80232 -16.52493 -16.15517 -15.80471 -15.69475 -15.30919 -15.01145 -14.89537 -14.46938 -13.85699 -13.80683 -13.73213 -13.60724 -13.25083 -13.18717 -13.13121 -13.06925 -12.93267 -12.83897 -12.77558 -12.58611 -12.43650 -12.23798 -12.13990 -12.06636 -11.78754 -11.73372 -11.61859 -11.21662 -11.07049 -10.70711 -10.64776 -10.31714 -10.26916 -8.26111 -6.40204 -0.66130 1.41039 1.42748 1.53839 1.87861 2.37991 2.77933 2.82064 3.07477 3.28029 3.68346 3.75604 3.81229 3.92054 3.99969 4.09010 4.14345 4.17223 4.28335 4.36960 4.48888 4.54141 4.59959 4.63370 4.67486 4.71690 4.77607 4.83578 4.96695 5.02749 5.03262 5.05384 5.07140 5.20351 5.27972 5.28507 5.29154 5.31625 5.34713 5.43030 5.54591 5.68488 6.06229 6.17249 6.73815 6.89324 7.30165 8.86212 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002864 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.892496 B = 9775.233439 C =10832.446658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 H 0.095 0.905 4 C -0.141 4.141 5 C -0.085 4.085 6 H 0.083 0.917 7 C -0.112 4.112 8 C 0.099 3.901 9 N -1.107 6.107 10 S 2.620 3.380 11 O -1.001 7.001 12 O -0.999 6.999 13 C -0.588 4.588 14 C 0.019 3.981 15 C -0.539 4.539 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.257 1.257 23 C -0.154 4.154 24 C 0.099 3.901 25 H 0.089 0.911 26 C -0.179 4.179 27 O -0.398 6.398 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.425 0.575 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.005 0.995 41 H 0.007 0.993 42 H 0.267 0.733 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 25.921 6.970 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.037 3.963 3 H 0.113 0.887 4 C -0.178 4.178 5 C -0.104 4.104 6 H 0.101 0.899 7 C -0.151 4.151 8 C -0.026 4.026 9 N -0.870 5.870 10 S 2.717 3.283 11 O -0.992 6.992 12 O -0.988 6.988 13 C -0.720 4.720 14 C -0.020 4.020 15 C -0.578 4.578 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.192 4.192 24 C 0.042 3.958 25 H 0.107 0.893 26 C -0.237 4.237 27 O -0.318 6.318 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.262 0.738 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.641 25.340 7.169 26.342 hybrid contribution -1.068 -0.870 -0.465 1.454 sum -1.709 24.469 6.704 25.429 Atomic orbital electron populations 1.22475 0.96023 1.02401 1.02625 1.21948 0.93318 0.96500 0.84500 0.88700 1.22152 1.02711 0.94696 0.98275 1.21022 1.00260 0.95389 0.93735 0.89906 1.21824 1.02536 0.92103 0.98620 1.21673 0.99446 0.96087 0.85435 1.55252 1.82349 1.25101 1.24260 1.04405 0.77601 0.73741 0.72573 1.93500 1.78167 1.85404 1.42103 1.93496 1.69215 1.84142 1.51995 1.30336 1.21978 1.07318 1.12393 1.18825 0.98746 0.88067 0.96333 1.21532 0.93037 0.92314 1.50912 0.90531 1.26123 1.01745 0.97988 0.94432 1.70103 1.31941 1.04825 1.50587 0.85312 0.78555 0.77651 0.78735 1.19649 1.20920 1.18036 1.22310 1.00325 1.01667 0.94905 1.21838 0.96822 0.80157 0.96976 0.89275 1.22483 0.98545 1.00911 1.01749 1.86372 1.83940 1.22086 1.39422 0.92778 0.92635 0.90302 0.89060 0.91140 0.89196 0.90948 0.91071 0.89987 0.73840 0.83957 0.83872 0.97617 0.97481 0.92407 0.90329 0.91244 0.91137 0.92305 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.36 72.01 0.67 -1.39 16 2 C 0.09 1.23 3.43 30.48 0.10 1.34 16 3 H 0.10 1.09 8.28 -1.35 -0.01 1.08 16 4 C -0.14 -1.54 4.77 30.46 0.15 -1.39 16 5 C -0.08 -1.08 2.10 -10.72 -0.02 -1.10 16 6 H 0.08 1.03 6.53 -2.53 -0.02 1.02 16 7 C -0.11 -1.46 4.81 30.67 0.15 -1.31 16 8 C 0.10 1.82 5.91 86.38 0.51 2.33 16 9 N -1.11 -24.85 5.89 -187.50 -1.10 -25.96 16 10 S 2.62 90.41 5.46 -56.49 -0.31 90.10 16 11 O -1.00 -41.24 18.08 -127.65 -2.31 -43.55 16 12 O -1.00 -41.00 17.50 -127.65 -2.23 -43.23 16 13 C -0.59 -21.47 6.01 71.98 0.43 -21.03 16 14 C 0.02 0.99 4.98 29.85 0.15 1.14 16 15 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 16 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 18 N -0.93 -56.80 13.29 21.44 0.28 -56.52 16 19 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 C -0.15 -2.34 4.53 30.45 0.14 -2.20 16 24 C 0.10 1.59 3.43 30.48 0.10 1.69 16 25 H 0.09 1.40 8.28 -1.35 -0.01 1.39 16 26 C -0.18 -2.72 9.36 72.01 0.67 -2.05 16 27 O -0.40 -7.06 9.72 -143.67 -1.40 -8.45 16 28 H 0.05 0.68 5.81 -2.39 -0.01 0.66 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.73 8.05 -2.27 -0.02 0.71 16 32 H 0.07 0.79 8.16 -2.27 -0.02 0.77 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.07 1.48 6.18 -2.39 -0.01 1.46 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.43 7.57 8.62 -96.75 -0.83 6.73 16 38 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 39 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.08 1.25 6.56 -2.27 -0.01 1.24 16 44 H 0.07 1.08 8.16 -2.27 -0.02 1.06 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.86 5.80 -2.39 -0.01 0.85 16 Total: -1.00 -75.86 380.08 -1.16 -77.01 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.13 Total: 18.77 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 3.75 Total: -53.11 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -0.82 Total: -82.47 kcal Atomic # 8 Polarization: -89.30 SS G_CDS: -5.94 Total: -95.24 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 90.41 SS G_CDS: -0.31 Total: 90.10 kcal Total: -75.86 -1.16 -77.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338430899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.697 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds