Wall clock time and date at job start Tue Mar 31 2020 12:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46964 * 2 1 4 4 N 1.46508 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.37093 * 119.99531 * 265.56024 * 4 3 2 6 6 H 1.08000 * 119.99702 * 145.67094 * 5 4 3 7 7 C 1.38954 * 120.00312 * 325.67479 * 5 4 3 8 8 N 1.31404 * 119.99953 * 338.40206 * 7 5 4 9 9 Si 1.86794 * 120.00014 * 158.40660 * 7 5 4 10 10 H 1.48500 * 109.47466 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47112 * 119.99706 * 9 7 5 12 12 H 1.48504 * 109.47129 * 239.99665 * 9 7 5 13 13 C 1.34776 * 120.00273 * 85.55987 * 4 3 2 14 14 O 1.21295 * 119.99622 * 359.97438 * 13 4 3 15 15 C 1.50693 * 119.99945 * 180.02562 * 13 4 3 16 16 C 1.52999 * 109.47237 * 179.97438 * 15 13 4 17 17 H 1.09005 * 110.83256 * 51.28468 * 16 15 13 18 18 C 1.54706 * 110.94490 * 287.52846 * 16 15 13 19 19 O 1.43756 * 102.79633 * 267.22617 * 18 16 15 20 20 C 1.36139 * 109.28815 * 332.40592 * 19 18 16 21 21 C 1.39201 * 129.82626 * 198.43915 * 20 19 18 22 22 C 1.38412 * 120.19741 * 180.50175 * 21 20 19 23 23 O 1.35900 * 119.88277 * 180.02562 * 22 21 20 24 24 C 1.42901 * 117.00193 * 179.97438 * 23 22 21 25 25 C 1.38790 * 120.23603 * 0.02562 * 22 21 20 26 26 C 1.38249 * 119.70917 * 359.85900 * 25 22 21 27 27 C 1.37792 * 120.04891 * 359.97438 * 26 25 22 28 28 H 1.09000 * 109.47167 * 299.99947 * 1 2 3 29 29 H 1.08996 * 109.47071 * 60.00509 * 1 2 3 30 30 H 1.09003 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47315 * 239.99525 * 2 1 3 32 32 H 1.09008 * 109.47452 * 119.99428 * 2 1 3 33 33 H 1.09005 * 109.47038 * 299.99809 * 3 2 1 34 34 H 1.08992 * 109.47662 * 59.99694 * 3 2 1 35 35 H 0.97001 * 120.00531 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47445 * 299.99776 * 15 13 4 37 37 H 1.08999 * 109.47317 * 60.00332 * 15 13 4 38 38 H 1.08998 * 110.74569 * 25.54958 * 18 16 15 39 39 H 1.08998 * 110.75011 * 148.89970 * 18 16 15 40 40 H 1.07994 * 119.89856 * 0.52296 * 21 20 19 41 41 H 1.09000 * 109.46961 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46994 * 300.00717 * 24 23 22 43 43 H 1.09004 * 109.46894 * 60.00325 * 24 23 22 44 44 H 1.07997 * 120.14537 * 179.87261 * 25 22 21 45 45 H 1.08006 * 119.97676 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5343 1.1829 6 1 5.1298 1.0148 1.3045 7 6 3.6779 2.2957 2.2260 8 7 2.8031 3.2445 1.9785 9 14 4.2321 1.9706 3.9799 10 1 5.2151 0.8575 3.9903 11 1 4.8640 3.1948 4.5344 12 1 3.0574 1.6007 4.8097 13 6 4.1784 1.3524 -1.1646 14 8 3.5715 1.2708 -2.2116 15 6 5.6854 1.3519 -1.1651 16 6 6.1949 1.2400 -2.6034 17 1 5.7234 1.9879 -3.2410 18 6 5.9683 -0.1852 -3.1610 19 8 7.2085 -0.8463 -2.8587 20 6 8.2101 0.0748 -2.8150 21 6 9.5881 -0.1018 -2.9021 22 6 10.4362 0.9892 -2.8229 23 8 11.7805 0.8096 -2.9092 24 6 12.5983 1.9781 -2.8204 25 6 9.9186 2.2661 -2.6555 26 6 8.5503 2.4451 -2.5710 27 6 7.7060 1.3593 -2.6534 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.4447 3.7758 2.7066 36 1 6.0492 2.2787 -0.7215 37 1 6.0487 0.5040 -0.5844 38 1 5.1371 -0.6718 -2.6508 39 1 5.7985 -0.1563 -4.2373 40 1 9.9967 -1.0930 -3.0323 41 1 13.6474 1.6945 -2.9041 42 1 12.3418 2.6633 -3.6284 43 1 12.4293 2.4678 -1.8614 44 1 10.5817 3.1161 -2.5918 45 1 8.1429 3.4368 -2.4404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340608025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:13 Heat of formation + Delta-G solvation = -82.050471 kcal Electronic energy + Delta-G solvation = -27061.083426 eV Core-core repulsion = 23237.461158 eV Total energy + Delta-G solvation = -3823.622269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14456 -39.48202 -38.51092 -36.18237 -35.26227 -33.26413 -32.71668 -31.32877 -30.44383 -29.06445 -27.55527 -26.83165 -25.62208 -24.29950 -23.09573 -21.78094 -21.10903 -20.29578 -19.07213 -18.15125 -17.07468 -16.66570 -16.30040 -15.95433 -15.86236 -15.64586 -15.10357 -14.69032 -14.33235 -14.29939 -13.94158 -13.81135 -13.46617 -13.15311 -12.85826 -12.76614 -12.49546 -12.22799 -12.04416 -11.82975 -11.63958 -11.40097 -11.35874 -11.30996 -11.23392 -10.99517 -10.69402 -10.62793 -10.51638 -10.34565 -10.25191 -10.16804 -9.75243 -9.13254 -8.54174 -8.43435 -7.83911 -7.56456 -6.42604 -4.09931 1.41783 1.43554 2.90695 3.06705 3.19061 3.23059 3.68775 3.85331 3.87583 4.07213 4.57716 4.76426 4.87239 4.90046 4.95697 4.98289 5.00447 5.16846 5.24074 5.28544 5.37191 5.67190 5.77372 5.77915 5.82257 5.89495 5.99290 6.01697 6.09306 6.19286 6.32215 6.38286 6.41676 6.46848 6.51674 6.55513 6.63041 6.65850 6.69088 6.81350 7.10879 7.18529 7.33667 7.39874 7.47829 7.88975 8.33348 9.02678 9.47872 9.90715 10.58174 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.003574 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.830391 B = 7831.826557 C = 9085.928868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.113 3.887 4 N -0.435 5.435 5 C -0.340 4.340 6 H 0.091 0.909 7 C 0.045 3.955 8 N -0.857 5.857 9 Si 0.911 3.089 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.466 3.534 14 O -0.609 6.609 15 C -0.106 4.106 16 C -0.054 4.054 17 H 0.101 0.899 18 C 0.064 3.936 19 O -0.304 6.304 20 C 0.150 3.850 21 C -0.179 4.179 22 C 0.155 3.845 23 O -0.318 6.318 24 C 0.029 3.971 25 C -0.239 4.239 26 C -0.027 4.027 27 C -0.195 4.195 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.269 0.731 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.271 -1.650 -6.193 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.011 4.011 4 N -0.152 5.152 5 C -0.468 4.468 6 H 0.108 0.892 7 C -0.162 4.162 8 N -0.493 5.493 9 Si 0.737 3.263 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.255 3.745 14 O -0.497 6.497 15 C -0.146 4.146 16 C -0.072 4.072 17 H 0.119 0.881 18 C -0.010 4.010 19 O -0.218 6.218 20 C 0.104 3.896 21 C -0.199 4.199 22 C 0.110 3.890 23 O -0.231 6.231 24 C -0.066 4.066 25 C -0.258 4.258 26 C -0.046 4.046 27 C -0.196 4.196 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.148 0.852 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.944 -1.957 -6.555 12.906 hybrid contribution 0.161 0.397 1.157 1.234 sum 11.105 -1.560 -5.398 12.446 Atomic orbital electron populations 1.21653 0.96615 1.00416 1.01373 1.21827 0.94697 0.99485 1.01229 1.21471 0.81450 0.94519 1.03629 1.43499 1.04836 1.62059 1.04840 1.19494 1.07645 1.29625 0.90045 0.89156 1.25314 0.96920 0.93535 1.00387 1.69933 1.29970 1.16601 1.32823 0.86129 0.78863 0.78655 0.82631 1.19096 1.20686 1.20435 1.20316 0.89176 0.81189 0.83808 1.90512 1.70433 1.57064 1.31674 1.21334 0.94593 1.04202 0.94483 1.21087 0.89782 0.97993 0.98387 0.88074 1.23923 0.84281 0.91975 1.00833 1.86813 1.16495 1.33008 1.85471 1.19142 0.89186 0.88106 0.93175 1.19079 0.88760 0.98759 1.13277 1.18353 0.82436 0.92901 0.95312 1.86025 1.14483 1.34579 1.88010 1.23050 0.94502 0.87551 1.01516 1.21029 0.96033 0.95872 1.12886 1.20087 0.91630 0.98078 0.94757 1.20830 0.96053 0.93706 1.08996 0.93025 0.93146 0.93652 0.92937 0.92439 0.93023 0.87493 0.92040 0.89045 0.90098 0.86922 0.90601 0.84940 0.88381 0.92600 0.92487 0.85212 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.72 6.23 -26.73 -0.17 -2.88 16 3 C 0.11 2.66 4.92 -4.04 -0.02 2.64 16 4 N -0.44 -10.70 2.55 -114.81 -0.29 -10.99 16 5 C -0.34 -8.45 8.70 -14.93 -0.13 -8.58 16 6 H 0.09 2.17 6.98 -52.49 -0.37 1.81 16 7 C 0.04 1.10 4.94 -17.47 -0.09 1.01 16 8 N -0.86 -22.10 11.31 55.50 0.63 -21.48 16 9 Si 0.91 19.14 29.60 -169.99 -5.03 14.11 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.47 10.86 7.18 -10.99 -0.08 10.78 16 14 O -0.61 -14.98 14.76 5.54 0.08 -14.90 16 15 C -0.11 -2.10 3.86 -27.89 -0.11 -2.20 16 16 C -0.05 -0.93 2.67 -90.40 -0.24 -1.17 16 17 H 0.10 1.79 7.87 -51.93 -0.41 1.38 16 18 C 0.06 1.07 7.05 38.06 0.27 1.33 16 19 O -0.30 -5.21 11.10 -20.18 -0.22 -5.43 16 20 C 0.15 2.44 7.03 -38.97 -0.27 2.17 16 21 C -0.18 -2.64 10.00 -39.16 -0.39 -3.03 16 22 C 0.16 2.09 6.67 -39.31 -0.26 1.83 16 23 O -0.32 -3.80 10.49 -19.43 -0.20 -4.01 16 24 C 0.03 0.22 9.81 101.05 0.99 1.21 16 25 C -0.24 -3.00 9.04 -39.37 -0.36 -3.35 16 26 C -0.03 -0.38 10.03 -39.74 -0.40 -0.78 16 27 C -0.19 -3.11 5.62 -104.05 -0.59 -3.69 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.05 1.26 7.56 -51.93 -0.39 0.87 16 34 H 0.11 2.68 5.34 -51.93 -0.28 2.40 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.09 1.82 8.10 -51.93 -0.42 1.40 16 37 H 0.08 1.60 7.62 -51.93 -0.40 1.21 16 38 H 0.11 1.99 7.17 -51.93 -0.37 1.62 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 43 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 44 H 0.13 1.26 6.29 -52.49 -0.33 0.93 16 45 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -28.72 368.45 -7.66 -36.38 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.70 Total: 7.51 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.47 Total: -6.75 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.33 Total: -32.47 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.35 Total: -24.33 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.72 -7.66 -36.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340608025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.668 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds