Wall clock time and date at job start Tue Mar 31 2020 12:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46964 * 2 1 4 4 N 1.46508 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.37093 * 119.99531 * 265.56024 * 4 3 2 6 6 H 1.08000 * 119.99702 * 145.67094 * 5 4 3 7 7 C 1.38954 * 120.00312 * 325.67479 * 5 4 3 8 8 N 1.31404 * 119.99953 * 338.40206 * 7 5 4 9 9 Si 1.86794 * 120.00014 * 158.40660 * 7 5 4 10 10 H 1.48500 * 109.47466 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47112 * 119.99706 * 9 7 5 12 12 H 1.48504 * 109.47129 * 239.99665 * 9 7 5 13 13 C 1.34776 * 120.00273 * 85.55987 * 4 3 2 14 14 O 1.21295 * 119.99622 * 359.97438 * 13 4 3 15 15 C 1.50693 * 119.99945 * 180.02562 * 13 4 3 16 16 C 1.52999 * 109.47237 * 179.97438 * 15 13 4 17 17 H 1.09005 * 110.83256 * 51.28468 * 16 15 13 18 18 C 1.54706 * 110.94490 * 287.52846 * 16 15 13 19 19 O 1.43756 * 102.79633 * 267.22617 * 18 16 15 20 20 C 1.36139 * 109.28815 * 332.40592 * 19 18 16 21 21 C 1.39201 * 129.82626 * 198.43915 * 20 19 18 22 22 C 1.38412 * 120.19741 * 180.50175 * 21 20 19 23 23 O 1.35900 * 119.88277 * 180.02562 * 22 21 20 24 24 C 1.42901 * 117.00193 * 179.97438 * 23 22 21 25 25 C 1.38790 * 120.23603 * 0.02562 * 22 21 20 26 26 C 1.38249 * 119.70917 * 359.85900 * 25 22 21 27 27 C 1.37792 * 120.04891 * 359.97438 * 26 25 22 28 28 H 1.09000 * 109.47167 * 299.99947 * 1 2 3 29 29 H 1.08996 * 109.47071 * 60.00509 * 1 2 3 30 30 H 1.09003 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47315 * 239.99525 * 2 1 3 32 32 H 1.09008 * 109.47452 * 119.99428 * 2 1 3 33 33 H 1.09005 * 109.47038 * 299.99809 * 3 2 1 34 34 H 1.08992 * 109.47662 * 59.99694 * 3 2 1 35 35 H 0.97001 * 120.00531 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47445 * 299.99776 * 15 13 4 37 37 H 1.08999 * 109.47317 * 60.00332 * 15 13 4 38 38 H 1.08998 * 110.74569 * 25.54958 * 18 16 15 39 39 H 1.08998 * 110.75011 * 148.89970 * 18 16 15 40 40 H 1.07994 * 119.89856 * 0.52296 * 21 20 19 41 41 H 1.09000 * 109.46961 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.46994 * 300.00717 * 24 23 22 43 43 H 1.09004 * 109.46894 * 60.00325 * 24 23 22 44 44 H 1.07997 * 120.14537 * 179.87261 * 25 22 21 45 45 H 1.08006 * 119.97676 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5343 1.1829 6 1 5.1298 1.0148 1.3045 7 6 3.6779 2.2957 2.2260 8 7 2.8031 3.2445 1.9785 9 14 4.2321 1.9706 3.9799 10 1 5.2151 0.8575 3.9903 11 1 4.8640 3.1948 4.5344 12 1 3.0574 1.6007 4.8097 13 6 4.1784 1.3524 -1.1646 14 8 3.5715 1.2708 -2.2116 15 6 5.6854 1.3519 -1.1651 16 6 6.1949 1.2400 -2.6034 17 1 5.7234 1.9879 -3.2410 18 6 5.9683 -0.1852 -3.1610 19 8 7.2085 -0.8463 -2.8587 20 6 8.2101 0.0748 -2.8150 21 6 9.5881 -0.1018 -2.9021 22 6 10.4362 0.9892 -2.8229 23 8 11.7805 0.8096 -2.9092 24 6 12.5983 1.9781 -2.8204 25 6 9.9186 2.2661 -2.6555 26 6 8.5503 2.4451 -2.5710 27 6 7.7060 1.3593 -2.6534 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.4447 3.7758 2.7066 36 1 6.0492 2.2787 -0.7215 37 1 6.0487 0.5040 -0.5844 38 1 5.1371 -0.6718 -2.6508 39 1 5.7985 -0.1563 -4.2373 40 1 9.9967 -1.0930 -3.0323 41 1 13.6474 1.6945 -2.9041 42 1 12.3418 2.6633 -3.6284 43 1 12.4293 2.4678 -1.8614 44 1 10.5817 3.1161 -2.5918 45 1 8.1429 3.4368 -2.4404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340608025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:12 Heat of formation + Delta-G solvation = -97.063988 kcal Electronic energy + Delta-G solvation = -27061.734461 eV Core-core repulsion = 23237.461158 eV Total energy + Delta-G solvation = -3824.273303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37177 -40.61664 -40.17874 -37.25561 -37.08641 -34.81796 -34.30354 -33.17410 -31.54995 -30.20305 -28.83626 -27.80227 -27.39572 -26.02320 -24.27085 -22.98227 -22.51314 -21.78906 -20.91161 -19.21740 -18.65624 -18.05977 -17.73576 -17.28820 -17.16934 -16.64188 -16.42902 -16.21890 -16.08086 -15.69663 -15.49129 -15.27846 -14.65599 -14.47259 -14.29678 -14.07586 -13.69969 -13.50849 -13.35141 -13.26309 -13.15806 -13.04733 -12.89122 -12.65146 -12.50234 -12.34857 -12.33863 -12.05321 -12.01285 -11.87586 -11.69853 -11.52462 -11.36212 -10.99614 -10.34205 -9.59818 -9.48150 -8.98223 -8.31371 -6.05168 0.30641 0.32682 1.39129 1.47761 1.59346 1.91320 2.02282 2.30668 2.58976 2.77184 2.95625 3.07612 3.50591 3.60083 3.86390 3.96523 4.04482 4.12905 4.17046 4.29824 4.35916 4.43964 4.46005 4.48697 4.51779 4.56303 4.61513 4.68626 4.77328 4.83185 4.86130 4.93337 4.98139 5.07624 5.09523 5.14578 5.22218 5.31070 5.37024 5.38183 5.45318 5.48645 5.58694 6.00993 6.05513 6.41287 6.42395 7.11437 7.59338 8.02198 8.70411 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.003574 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.830391 B = 7831.826557 C = 9085.928868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.450 5.450 5 C -0.356 4.356 6 H 0.094 0.906 7 C 0.007 3.993 8 N -0.888 5.888 9 Si 0.977 3.023 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.456 3.544 14 O -0.627 6.627 15 C -0.092 4.092 16 C -0.048 4.048 17 H 0.094 0.906 18 C 0.068 3.932 19 O -0.317 6.317 20 C 0.130 3.870 21 C -0.190 4.190 22 C 0.159 3.841 23 O -0.329 6.329 24 C 0.017 3.983 25 C -0.228 4.228 26 C -0.030 4.030 27 C -0.211 4.211 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.273 0.727 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.163 0.837 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 -1.392 -5.665 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.167 5.167 5 C -0.483 4.483 6 H 0.111 0.889 7 C -0.196 4.196 8 N -0.525 5.525 9 Si 0.801 3.199 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.247 3.753 14 O -0.516 6.516 15 C -0.132 4.132 16 C -0.067 4.067 17 H 0.112 0.888 18 C -0.007 4.007 19 O -0.231 6.231 20 C 0.084 3.916 21 C -0.209 4.209 22 C 0.113 3.887 23 O -0.243 6.243 24 C -0.077 4.077 25 C -0.247 4.247 26 C -0.048 4.048 27 C -0.212 4.212 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.181 0.819 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.811 -1.698 -6.033 14.262 hybrid contribution -0.297 0.380 0.938 1.055 sum 12.514 -1.318 -5.095 13.575 Atomic orbital electron populations 1.21607 0.93697 1.02303 1.01723 1.21720 0.97221 0.96946 1.00411 1.21436 0.81451 0.96265 1.01835 1.43761 1.05297 1.62320 1.05318 1.19735 1.08118 1.30024 0.90446 0.88850 1.26089 0.96861 0.92920 1.03733 1.70021 1.31053 1.17373 1.34039 0.85126 0.78475 0.78527 0.77791 1.18501 1.20386 1.20166 1.20923 0.90673 0.80452 0.83284 1.90481 1.71231 1.57690 1.32168 1.21208 0.91916 1.03732 0.96353 1.20938 0.91122 0.98208 0.96429 0.88801 1.23837 0.83969 0.91358 1.01519 1.86772 1.16768 1.33568 1.86012 1.19326 0.89594 0.88047 0.94598 1.19272 0.88388 0.99795 1.13485 1.18451 0.83263 0.92784 0.94214 1.86030 1.13724 1.36958 1.87560 1.23423 0.95015 0.86724 1.02564 1.21360 0.95761 0.96613 1.10960 1.20365 0.92177 0.98192 0.94102 1.20770 0.95002 0.94461 1.10976 0.92653 0.92834 0.90975 0.93972 0.92858 0.94933 0.88894 0.91743 0.89356 0.90398 0.88513 0.89004 0.84373 0.86029 0.91251 0.91540 0.81935 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.91 71.98 0.71 -3.72 16 2 C -0.12 -5.11 6.23 30.59 0.19 -4.92 16 3 C 0.11 5.51 4.92 86.38 0.42 5.94 16 4 N -0.45 -22.69 2.55 -635.53 -1.62 -24.31 16 5 C -0.36 -17.87 8.70 84.04 0.73 -17.14 16 6 H 0.09 4.53 6.98 -2.91 -0.02 4.51 16 7 C 0.01 0.36 4.94 84.93 0.42 0.78 16 8 N -0.89 -46.26 11.31 21.66 0.24 -46.01 16 9 Si 0.98 38.92 29.60 68.60 2.03 40.95 16 10 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 11 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 13 C 0.46 21.93 7.18 87.65 0.63 22.56 16 14 O -0.63 -31.83 14.76 -3.08 -0.05 -31.87 16 15 C -0.09 -3.73 3.86 29.85 0.12 -3.62 16 16 C -0.05 -1.69 2.67 -10.65 -0.03 -1.72 16 17 H 0.09 3.40 7.87 -2.38 -0.02 3.38 16 18 C 0.07 2.30 7.05 72.56 0.51 2.81 16 19 O -0.32 -11.04 11.10 -95.14 -1.06 -12.10 16 20 C 0.13 4.21 7.03 22.67 0.16 4.37 16 21 C -0.19 -5.44 10.00 22.54 0.23 -5.22 16 22 C 0.16 3.95 6.67 22.44 0.15 4.10 16 23 O -0.33 -7.02 10.49 -92.42 -0.97 -7.99 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 C -0.23 -5.09 9.04 22.40 0.20 -4.89 16 26 C -0.03 -0.79 10.03 22.17 0.22 -0.57 16 27 C -0.21 -6.66 5.62 -19.50 -0.11 -6.77 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.03 1.65 7.56 -2.38 -0.02 1.63 16 34 H 0.09 4.78 5.34 -2.39 -0.01 4.77 16 35 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 36 H 0.09 3.58 8.10 -2.39 -0.02 3.56 16 37 H 0.08 3.17 7.62 -2.39 -0.02 3.15 16 38 H 0.10 3.57 7.17 -2.39 -0.02 3.55 16 39 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 43 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 44 H 0.16 2.49 6.29 -2.91 -0.02 2.47 16 45 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -62.32 368.45 5.24 -57.08 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.99 Total: 30.94 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.67 Total: -6.68 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -1.38 Total: -70.33 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.07 Total: -51.96 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -62.32 5.24 -57.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340608025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.982 kcal (2) G-P(sol) polarization free energy of solvation -62.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds