Wall clock time and date at job start Tue Mar 31 2020 13:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 O 1.42903 * 109.46861 * 180.02562 * 3 2 1 5 5 C 1.35654 * 116.99877 * 180.02562 * 4 3 2 6 6 C 1.38465 * 120.18616 * 0.25138 * 5 4 3 7 7 C 1.38729 * 119.90932 * 180.31978 * 6 5 4 8 8 O 1.35715 * 119.85789 * 179.67895 * 7 6 5 9 9 C 1.42901 * 116.99993 * 180.02562 * 8 7 6 10 10 C 1.39176 * 120.28139 * 359.69742 * 7 6 5 11 11 C 1.36549 * 120.37857 * 0.02562 * 10 7 6 12 12 C 1.39887 * 120.08011 * 0.02562 * 11 10 7 13 13 C 1.47202 * 120.14071 * 179.97438 * 12 11 10 14 14 O 1.21662 * 120.00057 * 143.44534 * 13 12 11 15 15 N 1.34775 * 120.00395 * 323.44803 * 13 12 11 16 16 C 1.36937 * 119.99527 * 8.88129 * 15 13 12 17 17 H 1.08000 * 120.00024 * 308.81215 * 16 15 13 18 18 C 1.38997 * 119.99679 * 128.81670 * 16 15 13 19 19 N 1.31398 * 120.00311 * 340.73463 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 160.74239 * 18 16 15 21 21 H 1.48501 * 109.47161 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.46776 * 299.99625 * 20 18 16 23 23 H 1.48499 * 109.47574 * 59.99546 * 20 18 16 24 24 C 1.46497 * 120.00616 * 188.88003 * 15 13 12 25 25 C 1.52998 * 117.50138 * 180.72085 * 24 15 13 26 26 C 1.53005 * 117.49604 * 112.05815 * 24 15 13 27 27 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47119 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.47321 * 60.00240 * 1 2 3 30 30 H 1.08997 * 109.46640 * 239.99915 * 2 1 3 31 31 H 1.08997 * 109.46804 * 119.99777 * 2 1 3 32 32 H 1.08994 * 109.47414 * 59.99698 * 3 2 1 33 33 H 1.09007 * 109.46824 * 299.99826 * 3 2 1 34 34 H 1.08000 * 120.04330 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47179 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47245 * 300.00032 * 9 8 7 37 37 H 1.08997 * 109.46671 * 60.00177 * 9 8 7 38 38 H 1.08005 * 119.81185 * 179.97438 * 10 7 6 39 39 H 1.08001 * 119.95776 * 179.97438 * 11 10 7 40 40 H 0.97002 * 119.99742 * 175.08448 * 19 18 16 41 41 H 1.09001 * 115.54984 * 326.39794 * 24 15 13 42 42 H 1.09003 * 117.50010 * 0.02562 * 25 24 15 43 43 H 1.09000 * 117.50085 * 145.02315 * 25 24 15 44 44 H 1.09000 * 117.49599 * 214.97828 * 26 24 15 45 45 H 1.08993 * 117.49907 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0849 2.6512 -0.0001 6 6 3.3345 3.8149 0.0061 7 6 3.9702 5.0479 -0.0002 8 8 3.2337 6.1878 -0.0006 9 6 3.9511 7.4237 -0.0078 10 6 5.3601 5.1209 -0.0064 11 6 6.1114 3.9808 -0.0069 12 6 5.4865 2.7293 -0.0017 13 6 6.2952 1.4993 -0.0028 14 8 5.9250 0.5272 0.6282 15 7 7.4458 1.4499 -0.7029 16 6 7.9563 2.5907 -1.2623 17 1 7.3292 3.2168 -1.8796 18 6 9.2817 2.9429 -1.0357 19 7 9.9334 2.4283 -0.0173 20 14 10.1365 4.1479 -2.1788 21 1 11.5345 4.3558 -1.7232 22 1 10.1415 3.6016 -3.5597 23 1 9.4129 5.4445 -2.1621 24 6 8.1504 0.1758 -0.8653 25 6 9.4599 0.1885 -1.6564 26 6 8.2008 -0.4295 -2.2697 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 2.2558 3.7627 0.0111 35 1 3.2447 8.2539 -0.0069 36 1 4.5818 7.4829 0.8792 37 1 4.5738 7.4771 -0.9007 38 1 5.8471 6.0849 -0.0117 39 1 7.1895 4.0453 -0.0122 40 1 10.8775 2.6178 0.1001 41 1 8.0778 -0.5123 -0.0231 42 1 9.7975 1.1449 -2.0557 43 1 10.2488 -0.4915 -1.3348 44 1 8.1620 -1.5158 -2.3511 45 1 7.7094 0.1200 -3.0725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355159607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:10 Heat of formation + Delta-G solvation = -45.549567 kcal Electronic energy + Delta-G solvation = -27720.167337 eV Core-core repulsion = 23898.127867 eV Total energy + Delta-G solvation = -3822.039471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22782 -38.85373 -38.40570 -36.29171 -35.62758 -33.75858 -33.11105 -31.41580 -30.19664 -29.23501 -27.14668 -26.36729 -25.15764 -23.05312 -22.26489 -21.27697 -21.07389 -20.54642 -19.24329 -18.36925 -17.11044 -16.54154 -16.18776 -16.04611 -15.61942 -15.53360 -15.06833 -14.70816 -14.48260 -14.02593 -13.76314 -13.64427 -13.34793 -13.04676 -12.81959 -12.27842 -12.26023 -12.17154 -11.95429 -11.86206 -11.79235 -11.47610 -11.39473 -11.23926 -10.87808 -10.77800 -10.69568 -10.53289 -10.38683 -10.36663 -10.12604 -9.63879 -9.25920 -8.76699 -8.38416 -8.13630 -7.51778 -7.19755 -6.35001 -4.17836 1.69977 1.96182 3.08748 3.17869 3.19867 3.34154 3.61164 3.84836 4.06127 4.46390 4.69022 4.86017 4.95438 4.95753 5.10210 5.23016 5.24825 5.26860 5.29707 5.43005 5.43521 5.44989 5.57157 5.63446 5.71174 5.87389 5.91898 6.02169 6.04235 6.11753 6.18153 6.20886 6.25829 6.38059 6.52899 6.67721 6.79536 6.87689 7.03437 7.12727 7.18423 7.31501 7.41034 7.61561 7.90421 8.11826 8.37289 9.03588 9.55455 10.00449 10.63332 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.005482 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.361692 B = 5106.552301 C = 7372.258938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.055 3.945 4 O -0.283 6.283 5 C 0.201 3.799 6 C -0.265 4.265 7 C 0.168 3.832 8 O -0.322 6.322 9 C 0.029 3.971 10 C -0.263 4.263 11 C 0.011 3.989 12 C -0.165 4.165 13 C 0.543 3.457 14 O -0.582 6.582 15 N -0.418 5.418 16 C -0.352 4.352 17 H 0.085 0.915 18 C 0.058 3.942 19 N -0.838 5.838 20 Si 0.893 3.107 21 H -0.282 1.282 22 H -0.270 1.270 23 H -0.269 1.269 24 C 0.114 3.886 25 C -0.153 4.153 26 C -0.216 4.216 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.125 0.875 39 H 0.172 0.828 40 H 0.270 0.730 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 4.677 -1.751 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.021 4.021 4 O -0.195 6.195 5 C 0.153 3.847 6 C -0.285 4.285 7 C 0.122 3.878 8 O -0.235 6.235 9 C -0.067 4.067 10 C -0.282 4.282 11 C -0.007 4.007 12 C -0.169 4.169 13 C 0.333 3.667 14 O -0.466 6.466 15 N -0.136 5.136 16 C -0.480 4.480 17 H 0.102 0.898 18 C -0.151 4.151 19 N -0.471 5.471 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.195 1.195 23 H -0.194 1.194 24 C 0.008 3.992 25 C -0.190 4.190 26 C -0.255 4.255 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.189 0.811 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.763 4.055 -1.281 11.572 hybrid contribution 0.716 1.059 -0.698 1.456 sum -10.047 5.114 -1.979 11.446 Atomic orbital electron populations 1.21683 0.94690 1.02168 1.01916 1.21451 0.95383 0.95172 1.04078 1.22856 0.79645 0.98562 1.01004 1.86291 1.20020 1.25938 1.87237 1.18683 0.90844 0.83502 0.91621 1.20101 0.99802 0.89490 1.19079 1.18845 0.89932 0.85399 0.93586 1.85946 1.35904 1.13063 1.88571 1.23021 0.97975 0.83896 1.01766 1.20908 0.91994 1.00103 1.15227 1.21735 1.02833 0.89096 0.87032 1.19291 0.89569 0.95509 1.12545 1.17914 0.82689 0.86416 0.79687 1.90642 1.73295 1.38006 1.44618 1.42520 1.19489 1.05560 1.46072 1.19126 0.96854 1.01529 1.30453 0.89762 1.25400 0.98053 0.96907 0.94725 1.70071 1.10081 1.43018 1.23941 0.86577 0.78910 0.81368 0.81364 1.20720 1.19539 1.19434 1.21116 0.97206 0.88430 0.92408 1.23072 0.90426 1.02050 1.03475 1.23346 1.04363 0.98521 0.99246 0.91969 0.92542 0.92582 0.90825 0.90589 0.92267 0.92394 0.85147 0.88722 0.92521 0.92493 0.85690 0.81083 0.91975 0.87847 0.87440 0.90646 0.90364 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.56 6.30 -26.73 -0.17 -1.73 16 3 C 0.05 0.80 4.74 37.16 0.18 0.98 16 4 O -0.28 -5.73 8.82 -35.89 -0.32 -6.05 16 5 C 0.20 4.16 6.66 -38.69 -0.26 3.90 16 6 C -0.27 -4.71 8.97 -39.32 -0.35 -5.06 16 7 C 0.17 2.88 6.69 -39.05 -0.26 2.62 16 8 O -0.32 -4.78 10.48 -18.85 -0.20 -4.98 16 9 C 0.03 0.30 9.80 101.05 0.99 1.30 16 10 C -0.26 -4.66 8.96 -39.84 -0.36 -5.01 16 11 C 0.01 0.23 7.84 -39.57 -0.31 -0.08 16 12 C -0.17 -3.81 5.53 -104.83 -0.58 -4.38 16 13 C 0.54 14.23 7.18 -12.62 -0.09 14.14 16 14 O -0.58 -16.53 15.80 -12.00 -0.19 -16.72 16 15 N -0.42 -10.70 2.72 -109.01 -0.30 -10.99 16 16 C -0.35 -8.63 5.34 -14.99 -0.08 -8.71 16 17 H 0.08 2.05 6.80 -52.49 -0.36 1.69 16 18 C 0.06 1.39 2.82 -17.46 -0.05 1.34 16 19 N -0.84 -21.30 12.00 55.50 0.67 -20.63 16 20 Si 0.89 18.42 29.21 -169.99 -4.96 13.45 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 C 0.11 2.76 5.65 -67.93 -0.38 2.37 16 25 C -0.15 -3.34 8.48 -26.69 -0.23 -3.57 16 26 C -0.22 -4.51 10.40 -26.69 -0.28 -4.78 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.79 7.65 -51.93 -0.40 0.39 16 33 H 0.06 0.76 7.68 -51.92 -0.40 0.36 16 34 H 0.13 1.99 6.31 -52.49 -0.33 1.66 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 37 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 38 H 0.13 1.87 6.26 -52.48 -0.33 1.54 16 39 H 0.17 3.84 5.43 -52.49 -0.28 3.55 16 40 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 41 H 0.10 2.60 7.77 -51.93 -0.40 2.20 16 42 H 0.11 2.50 4.95 -51.93 -0.26 2.25 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -30.24 365.35 -8.14 -38.38 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.49 Total: 9.72 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.86 Total: -7.69 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.37 Total: -31.62 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.70 Total: -27.74 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.96 Total: 13.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.24 -8.14 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355159607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.169 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds