Wall clock time and date at job start Tue Mar 31 2020 13:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 O 1.42903 * 109.46861 * 180.02562 * 3 2 1 5 5 C 1.35654 * 116.99877 * 180.02562 * 4 3 2 6 6 C 1.38465 * 120.18616 * 0.25138 * 5 4 3 7 7 C 1.38729 * 119.90932 * 180.31978 * 6 5 4 8 8 O 1.35715 * 119.85789 * 179.67895 * 7 6 5 9 9 C 1.42901 * 116.99993 * 180.02562 * 8 7 6 10 10 C 1.39176 * 120.28139 * 359.69742 * 7 6 5 11 11 C 1.36549 * 120.37857 * 0.02562 * 10 7 6 12 12 C 1.39887 * 120.08011 * 0.02562 * 11 10 7 13 13 C 1.47202 * 120.14071 * 179.97438 * 12 11 10 14 14 O 1.21662 * 120.00057 * 143.44534 * 13 12 11 15 15 N 1.34775 * 120.00395 * 323.44803 * 13 12 11 16 16 C 1.36937 * 119.99527 * 8.88129 * 15 13 12 17 17 H 1.08000 * 120.00024 * 308.81215 * 16 15 13 18 18 C 1.38997 * 119.99679 * 128.81670 * 16 15 13 19 19 N 1.31398 * 120.00311 * 340.73463 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 160.74239 * 18 16 15 21 21 H 1.48501 * 109.47161 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.46776 * 299.99625 * 20 18 16 23 23 H 1.48499 * 109.47574 * 59.99546 * 20 18 16 24 24 C 1.46497 * 120.00616 * 188.88003 * 15 13 12 25 25 C 1.52998 * 117.50138 * 180.72085 * 24 15 13 26 26 C 1.53005 * 117.49604 * 112.05815 * 24 15 13 27 27 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47119 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.47321 * 60.00240 * 1 2 3 30 30 H 1.08997 * 109.46640 * 239.99915 * 2 1 3 31 31 H 1.08997 * 109.46804 * 119.99777 * 2 1 3 32 32 H 1.08994 * 109.47414 * 59.99698 * 3 2 1 33 33 H 1.09007 * 109.46824 * 299.99826 * 3 2 1 34 34 H 1.08000 * 120.04330 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47179 * 180.02562 * 9 8 7 36 36 H 1.08995 * 109.47245 * 300.00032 * 9 8 7 37 37 H 1.08997 * 109.46671 * 60.00177 * 9 8 7 38 38 H 1.08005 * 119.81185 * 179.97438 * 10 7 6 39 39 H 1.08001 * 119.95776 * 179.97438 * 11 10 7 40 40 H 0.97002 * 119.99742 * 175.08448 * 19 18 16 41 41 H 1.09001 * 115.54984 * 326.39794 * 24 15 13 42 42 H 1.09003 * 117.50010 * 0.02562 * 25 24 15 43 43 H 1.09000 * 117.50085 * 145.02315 * 25 24 15 44 44 H 1.09000 * 117.49599 * 214.97828 * 26 24 15 45 45 H 1.08993 * 117.49907 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0849 2.6512 -0.0001 6 6 3.3345 3.8149 0.0061 7 6 3.9702 5.0479 -0.0002 8 8 3.2337 6.1878 -0.0006 9 6 3.9511 7.4237 -0.0078 10 6 5.3601 5.1209 -0.0064 11 6 6.1114 3.9808 -0.0069 12 6 5.4865 2.7293 -0.0017 13 6 6.2952 1.4993 -0.0028 14 8 5.9250 0.5272 0.6282 15 7 7.4458 1.4499 -0.7029 16 6 7.9563 2.5907 -1.2623 17 1 7.3292 3.2168 -1.8796 18 6 9.2817 2.9429 -1.0357 19 7 9.9334 2.4283 -0.0173 20 14 10.1365 4.1479 -2.1788 21 1 11.5345 4.3558 -1.7232 22 1 10.1415 3.6016 -3.5597 23 1 9.4129 5.4445 -2.1621 24 6 8.1504 0.1758 -0.8653 25 6 9.4599 0.1885 -1.6564 26 6 8.2008 -0.4295 -2.2697 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 2.2558 3.7627 0.0111 35 1 3.2447 8.2539 -0.0069 36 1 4.5818 7.4829 0.8792 37 1 4.5738 7.4771 -0.9007 38 1 5.8471 6.0849 -0.0117 39 1 7.1895 4.0453 -0.0122 40 1 10.8775 2.6178 0.1001 41 1 8.0778 -0.5123 -0.0231 42 1 9.7975 1.1449 -2.0557 43 1 10.2488 -0.4915 -1.3348 44 1 8.1620 -1.5158 -2.3511 45 1 7.7094 0.1200 -3.0725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355159607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:10 Heat of formation + Delta-G solvation = -62.077979 kcal Electronic energy + Delta-G solvation = -27720.884063 eV Core-core repulsion = 23898.127867 eV Total energy + Delta-G solvation = -3822.756196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69629 -40.36412 -39.95673 -37.93593 -37.30329 -35.03874 -34.70111 -33.30047 -31.64288 -30.68173 -28.16521 -27.43793 -27.06371 -24.61817 -23.61198 -22.99486 -22.36931 -22.09143 -21.09092 -19.77019 -18.79608 -18.12993 -17.62088 -17.29971 -17.11573 -16.81068 -16.59849 -16.44210 -15.75412 -15.62242 -15.29771 -15.00232 -14.83012 -14.68115 -14.22298 -13.85488 -13.70317 -13.33758 -13.28525 -13.19509 -13.00658 -12.94936 -12.82659 -12.60969 -12.46293 -12.10860 -12.06255 -11.98453 -11.82065 -11.77789 -11.51102 -11.33598 -11.07418 -10.65375 -10.29919 -9.57345 -9.18259 -8.95094 -8.20446 -6.09506 0.17361 0.48405 1.45170 1.50081 1.57350 2.09410 2.13072 2.32191 2.40518 2.79475 2.89081 3.07935 3.42459 3.83648 3.93177 3.96250 4.09703 4.12617 4.19823 4.27614 4.32937 4.38077 4.40808 4.44895 4.48180 4.51766 4.55001 4.55893 4.77428 4.79551 4.84228 4.88225 5.00081 5.11444 5.17240 5.17612 5.29541 5.32069 5.39516 5.48856 5.50739 5.55175 5.69398 6.21429 6.33381 6.46022 6.53821 7.14442 7.62386 8.09870 8.79544 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.005482 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.361692 B = 5106.552301 C = 7372.258938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.046 3.954 4 O -0.316 6.316 5 C 0.195 3.805 6 C -0.262 4.262 7 C 0.184 3.816 8 O -0.322 6.322 9 C 0.015 3.985 10 C -0.257 4.257 11 C 0.004 3.996 12 C -0.208 4.208 13 C 0.525 3.475 14 O -0.624 6.624 15 N -0.424 5.424 16 C -0.358 4.358 17 H 0.084 0.916 18 C 0.031 3.969 19 N -0.873 5.873 20 Si 0.956 3.044 21 H -0.282 1.282 22 H -0.268 1.268 23 H -0.257 1.257 24 C 0.074 3.926 25 C -0.140 4.140 26 C -0.188 4.188 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.271 0.729 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 7.079 -3.073 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.028 4.028 4 O -0.229 6.229 5 C 0.147 3.853 6 C -0.281 4.281 7 C 0.137 3.863 8 O -0.235 6.235 9 C -0.079 4.079 10 C -0.276 4.276 11 C -0.014 4.014 12 C -0.212 4.212 13 C 0.316 3.684 14 O -0.512 6.512 15 N -0.141 5.141 16 C -0.485 4.485 17 H 0.101 0.899 18 C -0.175 4.175 19 N -0.507 5.507 20 Si 0.778 3.222 21 H -0.207 1.207 22 H -0.193 1.193 23 H -0.181 1.181 24 C -0.031 4.031 25 C -0.178 4.178 26 C -0.227 4.227 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.175 0.825 35 H 0.146 0.854 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.133 6.482 -2.624 14.004 hybrid contribution 1.048 0.381 -0.238 1.140 sum -11.085 6.863 -2.862 13.348 Atomic orbital electron populations 1.21649 0.91614 1.03339 1.02996 1.21499 0.97870 0.93870 1.02771 1.23235 0.77040 1.00104 1.02470 1.86262 1.23021 1.26423 1.87176 1.18772 0.90331 0.84651 0.91544 1.20306 1.00936 0.88766 1.18108 1.18875 0.89704 0.86304 0.91423 1.85972 1.36277 1.13483 1.87734 1.23436 0.99253 0.82663 1.02543 1.21089 0.92375 1.00085 1.14025 1.21470 1.02031 0.89628 0.88312 1.19263 0.90723 0.94818 1.16357 1.18603 0.83253 0.87278 0.79249 1.90572 1.74375 1.39765 1.46451 1.42742 1.19412 1.06312 1.45635 1.19246 0.97277 1.01648 1.30378 0.89865 1.26031 0.97982 0.98053 0.95462 1.70176 1.10327 1.44772 1.25471 0.85597 0.77674 0.79694 0.79213 1.20716 1.19274 1.18093 1.21208 0.99694 0.88588 0.93623 1.23014 0.90382 1.01951 1.02411 1.23358 1.02689 1.00038 0.96572 0.90818 0.91527 0.91368 0.91945 0.92193 0.90830 0.90571 0.82469 0.85407 0.91714 0.91689 0.82726 0.83191 0.91874 0.90125 0.88594 0.88998 0.87480 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.62 16 2 C -0.12 -3.10 6.30 30.60 0.19 -2.91 16 3 C 0.05 1.32 4.74 71.98 0.34 1.66 16 4 O -0.32 -13.24 8.82 -73.23 -0.65 -13.89 16 5 C 0.20 8.22 6.66 22.85 0.15 8.37 16 6 C -0.26 -8.92 8.97 22.44 0.20 -8.72 16 7 C 0.18 5.88 6.69 22.61 0.15 6.03 16 8 O -0.32 -8.37 10.48 -90.36 -0.95 -9.32 16 9 C 0.02 0.26 9.80 113.37 1.11 1.37 16 10 C -0.26 -8.70 8.96 22.10 0.20 -8.50 16 11 C 0.00 0.17 7.84 22.27 0.17 0.35 16 12 C -0.21 -9.97 5.53 -20.00 -0.11 -10.08 16 13 C 0.52 29.18 7.18 86.60 0.62 29.80 16 14 O -0.62 -38.02 15.80 12.24 0.19 -37.83 16 15 N -0.42 -22.72 2.72 -617.03 -1.68 -24.40 16 16 C -0.36 -18.04 5.34 84.08 0.45 -17.60 16 17 H 0.08 4.14 6.80 -2.91 -0.02 4.12 16 18 C 0.03 1.49 2.82 84.94 0.24 1.73 16 19 N -0.87 -45.41 12.00 21.67 0.26 -45.15 16 20 Si 0.96 37.46 29.21 68.60 2.00 39.47 16 21 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 C 0.07 3.74 5.65 44.99 0.25 3.99 16 25 C -0.14 -6.18 8.48 30.62 0.26 -5.92 16 26 C -0.19 -7.84 10.40 30.62 0.32 -7.52 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.87 7.65 -2.39 -0.02 1.85 16 33 H 0.08 1.88 7.68 -2.38 -0.02 1.86 16 34 H 0.16 4.38 6.31 -2.91 -0.02 4.36 16 35 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.04 7.65 -2.39 -0.02 1.03 16 37 H 0.06 1.05 7.65 -2.39 -0.02 1.03 16 38 H 0.16 4.19 6.26 -2.91 -0.02 4.17 16 39 H 0.15 6.97 5.43 -2.91 -0.02 6.95 16 40 H 0.27 13.33 8.32 -92.71 -0.77 12.56 16 41 H 0.08 4.35 7.77 -2.39 -0.02 4.33 16 42 H 0.10 4.48 4.95 -2.39 -0.01 4.47 16 43 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -69.44 365.35 5.45 -63.99 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 1.00 Total: 36.70 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.27 Total: -9.57 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -1.42 Total: -69.55 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -1.40 Total: -61.04 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.00 Total: 39.47 kcal Total: -69.44 5.45 -63.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355159607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.908 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds