Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47338 * 2 1 4 4 O 1.42901 * 109.47408 * 120.00141 * 2 1 3 5 5 C 1.42893 * 114.00430 * 149.99826 * 4 2 1 6 6 C 1.50698 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.38357 * 119.85453 * 90.00048 * 6 5 4 8 8 C 1.37958 * 120.14585 * 179.97438 * 7 6 5 9 9 C 1.39575 * 119.85303 * 359.97438 * 8 7 6 10 10 C 1.47847 * 120.14305 * 179.97438 * 9 8 7 11 11 O 1.21554 * 119.99856 * 171.48322 * 10 9 8 12 12 N 1.34773 * 120.00204 * 351.47650 * 10 9 8 13 13 C 1.47573 * 134.49466 * 181.75094 * 12 10 9 14 14 C 1.53943 * 86.12160 * 155.35887 * 13 12 10 15 15 O 1.42901 * 113.74206 * 269.15612 * 14 13 12 16 16 C 1.50695 * 113.74601 * 137.95026 * 14 13 12 17 17 H 1.08003 * 119.99869 * 17.16801 * 16 14 13 18 18 C 1.37875 * 120.00321 * 197.16712 * 16 14 13 19 19 N 1.31515 * 120.00362 * 191.75879 * 18 16 14 20 20 Si 1.86802 * 119.99852 * 11.75969 * 18 16 14 21 21 H 1.48506 * 109.47179 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46773 * 299.99682 * 20 18 16 23 23 H 1.48495 * 109.47218 * 59.99722 * 20 18 16 24 24 C 1.47816 * 134.45535 * 1.61865 * 12 10 9 25 25 C 1.39569 * 119.71116 * 0.24119 * 9 8 7 26 26 C 1.37963 * 119.85241 * 359.52206 * 25 9 8 27 27 H 1.09002 * 109.47519 * 300.00033 * 1 2 3 28 28 H 1.09007 * 109.47315 * 59.99984 * 1 2 3 29 29 H 1.09001 * 109.47536 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.47329 * 239.99869 * 2 1 3 31 31 H 1.09000 * 109.47371 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46931 * 300.00251 * 3 2 1 33 33 H 1.08998 * 109.47323 * 59.99643 * 3 2 1 34 34 H 1.09005 * 109.47368 * 59.99941 * 5 4 2 35 35 H 1.09004 * 109.47070 * 300.00172 * 5 4 2 36 36 H 1.08003 * 119.93086 * 359.97438 * 7 6 5 37 37 H 1.08008 * 120.07393 * 179.97438 * 8 7 6 38 38 H 1.08999 * 113.77392 * 41.05640 * 13 12 10 39 39 H 1.09007 * 113.77150 * 269.66074 * 13 12 10 40 40 H 0.96696 * 114.00171 * 176.93707 * 15 14 13 41 41 H 0.97006 * 119.99641 * 354.86988 * 19 18 16 42 42 H 1.09000 * 113.77039 * 90.37678 * 24 12 10 43 43 H 1.09003 * 113.83544 * 318.91582 * 24 12 10 44 44 H 1.08005 * 120.07577 * 179.73050 * 25 9 8 45 45 H 1.08005 * 119.92476 * 180.22677 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2659 -1.3245 0.9886 6 6 3.6692 -1.9989 2.2745 7 6 3.2879 -3.3069 2.5153 8 6 3.6542 -3.9302 3.6903 9 6 4.4117 -3.2386 4.6368 10 6 4.8074 -3.9002 5.8984 11 8 5.5925 -3.3558 6.6499 12 7 4.2974 -5.1068 6.2153 13 6 4.4367 -6.0182 7.3675 14 6 3.0597 -6.5738 6.9611 15 8 1.9626 -5.9110 7.5927 16 6 2.9637 -8.0756 7.0410 17 1 3.6923 -8.6338 7.6103 18 6 1.9457 -8.7371 6.3876 19 7 1.7200 -10.0082 6.6384 20 14 0.8869 -7.8278 5.1459 21 1 -0.1288 -8.7561 4.5875 22 1 0.2046 -6.6913 5.8154 23 1 1.7436 -7.3133 4.0475 24 6 3.3721 -6.0471 5.5486 25 6 4.7892 -1.9178 4.3897 26 6 4.4204 -1.3077 3.2085 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 4.0200 -0.5874 0.7124 35 1 3.1808 -2.0707 0.1986 36 1 2.7021 -3.8411 1.7819 37 1 3.3555 -4.9512 3.8772 38 1 4.4381 -5.5102 8.3319 39 1 5.2490 -6.7376 7.2631 40 1 1.0946 -6.2255 7.3049 41 1 2.3150 -10.4997 7.2262 42 1 3.8709 -6.7749 4.9086 43 1 2.5251 -5.5620 5.0634 44 1 5.3717 -1.3757 5.1199 45 1 4.7151 -0.2870 3.0144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356571037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -59.609731 kcal Electronic energy + Delta-G solvation = -26635.591143 eV Core-core repulsion = 22812.941978 eV Total energy + Delta-G solvation = -3822.649165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30059 -39.23885 -38.27801 -37.29810 -34.32943 -33.50704 -32.66286 -31.61007 -31.04291 -28.90732 -27.61614 -26.64679 -25.83176 -24.79713 -22.57966 -22.01968 -21.63381 -20.05428 -19.14067 -18.01945 -17.24310 -17.00797 -16.58601 -15.98805 -15.66774 -15.35775 -15.09311 -14.72426 -14.42791 -14.19938 -13.91808 -13.59263 -13.53098 -13.47407 -13.01820 -12.89065 -12.73703 -12.62002 -12.48535 -12.38561 -12.12071 -12.01119 -11.76483 -11.47440 -11.28028 -11.03475 -10.96058 -10.75898 -10.48047 -10.06344 -9.88309 -9.55723 -9.43625 -9.03779 -8.98723 -8.90222 -8.51548 -8.06831 -6.76689 -4.51566 0.82184 1.37313 2.95116 3.04878 3.10666 3.20340 3.37897 3.54476 4.03314 4.13484 4.45163 4.59580 4.62925 4.71789 4.75883 4.83111 4.85149 4.94174 5.02822 5.08057 5.17207 5.24352 5.37004 5.41002 5.42381 5.45901 5.49910 5.55904 5.71894 5.82593 5.86360 5.87827 5.94678 5.99369 6.13259 6.21780 6.26934 6.33871 6.44536 6.51798 6.67205 6.85524 6.95128 7.48499 8.04269 8.18855 8.52410 8.54532 8.67531 9.24378 10.59747 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.003391 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.654469 B = 8255.714903 C = 9695.636041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.374 6.374 5 C 0.103 3.897 6 C -0.076 4.076 7 C -0.107 4.107 8 C -0.104 4.104 9 C -0.113 4.113 10 C 0.571 3.429 11 O -0.556 6.556 12 N -0.625 5.625 13 C 0.130 3.870 14 C 0.199 3.801 15 O -0.565 6.565 16 C -0.615 4.615 17 H 0.071 0.929 18 C 0.035 3.965 19 N -0.887 5.887 20 Si 1.038 2.962 21 H -0.277 1.277 22 H -0.278 1.278 23 H -0.273 1.273 24 C 0.049 3.951 25 C -0.067 4.067 26 C -0.109 4.109 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.368 0.632 41 H 0.274 0.726 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.136 0.864 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 16.889 -15.820 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.294 6.294 5 C 0.027 3.973 6 C -0.076 4.076 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.116 4.116 10 C 0.361 3.639 11 O -0.437 6.437 12 N -0.357 5.357 13 C 0.009 3.991 14 C 0.158 3.842 15 O -0.374 6.374 16 C -0.653 4.653 17 H 0.089 0.911 18 C -0.173 4.173 19 N -0.519 5.519 20 Si 0.865 3.135 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.199 1.199 24 C -0.073 4.073 25 C -0.086 4.086 26 C -0.127 4.127 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.218 0.782 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.154 0.846 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.313 17.476 -15.985 23.686 hybrid contribution 1.077 -0.165 0.383 1.154 sum 0.764 17.311 -15.602 23.317 Atomic orbital electron populations 1.21867 0.93496 1.02909 1.02513 1.22102 0.95159 0.92416 0.88178 1.22309 1.01492 0.96871 1.02646 1.88052 1.36029 1.69841 1.35480 1.21360 0.86189 0.95280 0.94442 1.19722 0.97969 0.94180 0.95730 1.21008 0.99597 0.94484 0.97378 1.22119 0.95530 1.01458 0.93071 1.20067 1.00960 0.95381 0.95153 1.17915 0.80119 0.80452 0.85400 1.90713 1.35761 1.65014 1.52166 1.50025 1.46170 1.16061 1.23490 1.23259 0.97562 0.88778 0.89548 1.20424 0.84984 0.92185 0.86578 1.86384 1.16679 1.65458 1.68869 1.22208 1.17264 0.89311 1.36546 0.91061 1.25826 0.96636 0.96924 0.97914 1.70802 1.35909 1.09692 1.35543 0.84185 0.76958 0.75459 0.76852 1.20201 1.20459 1.19903 1.24904 0.91837 0.89602 1.00999 1.21237 0.97322 0.93341 0.96667 1.20950 0.98776 0.99653 0.93347 0.91691 0.91304 0.91845 0.92233 0.92519 0.91691 0.91665 0.92416 0.92289 0.85400 0.83731 0.90618 0.88866 0.78234 0.91506 0.88290 0.90839 0.84633 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.56 37.15 0.36 -0.73 16 2 C 0.08 0.63 3.34 -26.74 -0.09 0.54 16 3 C -0.18 -1.19 9.53 37.15 0.35 -0.84 16 4 O -0.37 -4.10 9.97 -35.23 -0.35 -4.45 16 5 C 0.10 1.00 5.86 36.00 0.21 1.21 16 6 C -0.08 -0.92 5.52 -104.54 -0.58 -1.50 16 7 C -0.11 -1.39 9.68 -39.64 -0.38 -1.78 16 8 C -0.10 -1.61 9.09 -39.19 -0.36 -1.96 16 9 C -0.11 -1.94 5.87 -104.97 -0.62 -2.56 16 10 C 0.57 11.71 7.98 -12.33 -0.10 11.61 16 11 O -0.56 -12.71 17.11 5.32 0.09 -12.62 16 12 N -0.62 -12.88 3.61 -179.22 -0.65 -13.53 16 13 C 0.13 2.76 8.23 -2.97 -0.02 2.74 16 14 C 0.20 4.50 1.07 -90.85 -0.10 4.40 16 15 O -0.57 -13.05 13.46 -35.23 -0.47 -13.52 16 16 C -0.62 -15.61 9.04 -34.44 -0.31 -15.92 16 17 H 0.07 1.94 8.05 -52.48 -0.42 1.52 16 18 C 0.03 0.90 5.44 -17.82 -0.10 0.80 16 19 N -0.89 -24.70 13.70 55.43 0.76 -23.95 16 20 Si 1.04 21.63 24.65 -169.99 -4.19 17.44 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.29 5.75 56.52 0.32 -4.97 16 23 H -0.27 -5.06 6.39 56.52 0.36 -4.70 16 24 C 0.05 0.97 3.26 -2.84 -0.01 0.97 16 25 C -0.07 -1.00 9.59 -39.19 -0.38 -1.37 16 26 C -0.11 -1.36 9.68 -39.64 -0.38 -1.74 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.40 7.79 -51.92 -0.40 -0.01 16 31 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 32 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.46 7.81 -51.93 -0.41 0.06 16 35 H 0.06 0.48 8.03 -51.93 -0.42 0.07 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.15 2.28 3.90 -52.48 -0.20 2.07 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.09 1.85 8.09 -51.92 -0.42 1.43 16 40 H 0.37 7.85 5.85 45.56 0.27 8.12 16 41 H 0.27 7.64 8.73 -40.82 -0.36 7.29 16 42 H 0.10 1.88 8.08 -51.93 -0.42 1.46 16 43 H 0.07 1.37 5.08 -51.93 -0.26 1.10 16 44 H 0.14 1.98 7.68 -52.48 -0.40 1.57 16 45 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -30.78 366.41 -7.94 -38.72 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.15 Total: 12.52 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.50 Total: -6.14 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.11 Total: -37.47 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.73 Total: -30.59 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.19 Total: 17.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.78 -7.94 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356571037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.888 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds