Wall clock time and date at job start Tue Mar 31 2020 13:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47338 * 2 1 4 4 O 1.42901 * 109.47408 * 120.00141 * 2 1 3 5 5 C 1.42893 * 114.00430 * 149.99826 * 4 2 1 6 6 C 1.50698 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.38357 * 119.85453 * 90.00048 * 6 5 4 8 8 C 1.37958 * 120.14585 * 179.97438 * 7 6 5 9 9 C 1.39575 * 119.85303 * 359.97438 * 8 7 6 10 10 C 1.47847 * 120.14305 * 179.97438 * 9 8 7 11 11 O 1.21554 * 119.99856 * 171.48322 * 10 9 8 12 12 N 1.34773 * 120.00204 * 351.47650 * 10 9 8 13 13 C 1.47573 * 134.49466 * 181.75094 * 12 10 9 14 14 C 1.53943 * 86.12160 * 155.35887 * 13 12 10 15 15 O 1.42901 * 113.74206 * 269.15612 * 14 13 12 16 16 C 1.50695 * 113.74601 * 137.95026 * 14 13 12 17 17 H 1.08003 * 119.99869 * 17.16801 * 16 14 13 18 18 C 1.37875 * 120.00321 * 197.16712 * 16 14 13 19 19 N 1.31515 * 120.00362 * 191.75879 * 18 16 14 20 20 Si 1.86802 * 119.99852 * 11.75969 * 18 16 14 21 21 H 1.48506 * 109.47179 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46773 * 299.99682 * 20 18 16 23 23 H 1.48495 * 109.47218 * 59.99722 * 20 18 16 24 24 C 1.47816 * 134.45535 * 1.61865 * 12 10 9 25 25 C 1.39569 * 119.71116 * 0.24119 * 9 8 7 26 26 C 1.37963 * 119.85241 * 359.52206 * 25 9 8 27 27 H 1.09002 * 109.47519 * 300.00033 * 1 2 3 28 28 H 1.09007 * 109.47315 * 59.99984 * 1 2 3 29 29 H 1.09001 * 109.47536 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.47329 * 239.99869 * 2 1 3 31 31 H 1.09000 * 109.47371 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46931 * 300.00251 * 3 2 1 33 33 H 1.08998 * 109.47323 * 59.99643 * 3 2 1 34 34 H 1.09005 * 109.47368 * 59.99941 * 5 4 2 35 35 H 1.09004 * 109.47070 * 300.00172 * 5 4 2 36 36 H 1.08003 * 119.93086 * 359.97438 * 7 6 5 37 37 H 1.08008 * 120.07393 * 179.97438 * 8 7 6 38 38 H 1.08999 * 113.77392 * 41.05640 * 13 12 10 39 39 H 1.09007 * 113.77150 * 269.66074 * 13 12 10 40 40 H 0.96696 * 114.00171 * 176.93707 * 15 14 13 41 41 H 0.97006 * 119.99641 * 354.86988 * 19 18 16 42 42 H 1.09000 * 113.77039 * 90.37678 * 24 12 10 43 43 H 1.09003 * 113.83544 * 318.91582 * 24 12 10 44 44 H 1.08005 * 120.07577 * 179.73050 * 25 9 8 45 45 H 1.08005 * 119.92476 * 180.22677 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2659 -1.3245 0.9886 6 6 3.6692 -1.9989 2.2745 7 6 3.2879 -3.3069 2.5153 8 6 3.6542 -3.9302 3.6903 9 6 4.4117 -3.2386 4.6368 10 6 4.8074 -3.9002 5.8984 11 8 5.5925 -3.3558 6.6499 12 7 4.2974 -5.1068 6.2153 13 6 4.4367 -6.0182 7.3675 14 6 3.0597 -6.5738 6.9611 15 8 1.9626 -5.9110 7.5927 16 6 2.9637 -8.0756 7.0410 17 1 3.6923 -8.6338 7.6103 18 6 1.9457 -8.7371 6.3876 19 7 1.7200 -10.0082 6.6384 20 14 0.8869 -7.8278 5.1459 21 1 -0.1288 -8.7561 4.5875 22 1 0.2046 -6.6913 5.8154 23 1 1.7436 -7.3133 4.0475 24 6 3.3721 -6.0471 5.5486 25 6 4.7892 -1.9178 4.3897 26 6 4.4204 -1.3077 3.2085 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 4.0200 -0.5874 0.7124 35 1 3.1808 -2.0707 0.1986 36 1 2.7021 -3.8411 1.7819 37 1 3.3555 -4.9512 3.8772 38 1 4.4381 -5.5102 8.3319 39 1 5.2490 -6.7376 7.2631 40 1 1.0946 -6.2255 7.3049 41 1 2.3150 -10.4997 7.2262 42 1 3.8709 -6.7749 4.9086 43 1 2.5251 -5.5620 5.0634 44 1 5.3717 -1.3757 5.1199 45 1 4.7151 -0.2870 3.0144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356571037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:00 Heat of formation + Delta-G solvation = -81.429792 kcal Electronic energy + Delta-G solvation = -26636.537332 eV Core-core repulsion = 22812.941978 eV Total energy + Delta-G solvation = -3823.595354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77637 -40.36968 -39.34948 -38.64936 -36.10823 -34.66205 -34.26285 -32.59044 -32.08441 -30.51482 -28.20854 -27.88419 -27.33489 -26.40746 -23.65274 -23.21387 -22.18451 -21.65799 -20.66929 -19.95346 -18.52524 -18.05890 -17.76430 -17.23742 -16.93573 -16.63911 -16.43383 -15.86731 -15.65081 -15.38413 -15.23276 -14.98594 -14.69869 -14.60524 -14.25269 -14.19221 -14.03460 -13.84296 -13.58370 -13.29387 -13.20009 -12.99244 -12.98018 -12.47950 -12.33788 -12.22169 -12.15555 -12.02414 -11.77306 -11.58398 -11.31916 -11.13937 -10.89498 -10.51031 -10.34070 -10.05434 -10.02765 -9.71059 -8.83582 -6.60905 -0.31621 0.33363 1.41801 1.47142 1.59666 1.66917 1.77765 2.41767 2.58251 2.89572 3.05843 3.17406 3.47673 3.64567 3.74860 3.81588 3.92544 4.08006 4.14078 4.21663 4.22631 4.29801 4.31905 4.34885 4.46180 4.49936 4.53408 4.59704 4.63946 4.78773 4.82918 4.91723 4.93261 4.95939 4.99199 4.99907 5.21676 5.33364 5.34509 5.36582 5.46565 5.56879 5.82526 5.90612 6.33862 6.39316 6.59375 6.91146 6.95853 7.25452 8.51920 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.003391 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.654469 B = 8255.714903 C = 9695.636041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.174 4.174 4 O -0.400 6.400 5 C 0.102 3.898 6 C -0.067 4.067 7 C -0.105 4.105 8 C -0.110 4.110 9 C -0.141 4.141 10 C 0.566 3.434 11 O -0.591 6.591 12 N -0.627 5.627 13 C 0.124 3.876 14 C 0.192 3.808 15 O -0.574 6.574 16 C -0.619 4.619 17 H 0.035 0.965 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 1.065 2.935 21 H -0.285 1.285 22 H -0.249 1.249 23 H -0.230 1.230 24 C 0.064 3.936 25 C -0.075 4.075 26 C -0.103 4.103 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.375 0.625 41 H 0.258 0.742 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.810 19.451 -19.534 27.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.231 4.231 4 O -0.320 6.320 5 C 0.027 3.973 6 C -0.068 4.068 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.144 4.144 10 C 0.359 3.641 11 O -0.474 6.474 12 N -0.359 5.359 13 C 0.002 3.998 14 C 0.151 3.849 15 O -0.383 6.383 16 C -0.657 4.657 17 H 0.053 0.947 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.884 3.116 21 H -0.211 1.211 22 H -0.174 1.174 23 H -0.153 1.153 24 C -0.058 4.058 25 C -0.094 4.094 26 C -0.121 4.121 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.226 0.774 41 H 0.068 0.932 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.231 20.048 -19.696 28.131 hybrid contribution 1.402 -0.928 1.567 2.298 sum 0.172 19.120 -18.129 26.349 Atomic orbital electron populations 1.21898 0.93365 1.02658 1.02917 1.22304 0.95335 0.92878 0.87862 1.22297 1.01700 0.96265 1.02874 1.88011 1.36468 1.70341 1.37190 1.21452 0.86460 0.96213 0.93215 1.20112 0.96331 0.93906 0.96421 1.21316 0.99165 0.94974 0.96829 1.22089 0.95699 1.01322 0.93715 1.19913 1.03671 0.96485 0.94330 1.18539 0.79379 0.79948 0.86281 1.90678 1.37370 1.65689 1.53676 1.50002 1.46492 1.16317 1.23134 1.23252 0.97403 0.89285 0.89879 1.20388 0.85290 0.90359 0.88896 1.86369 1.17213 1.65252 1.69493 1.22272 1.16518 0.91068 1.35846 0.94715 1.27303 0.97894 0.96631 0.98991 1.70948 1.36567 1.11100 1.36752 0.83952 0.76229 0.75369 0.76089 1.21116 1.17365 1.15344 1.24781 0.92382 0.89454 0.99180 1.21312 0.97573 0.92702 0.97773 1.21251 0.97893 1.00783 0.92137 0.92886 0.89351 0.92403 0.90563 0.92166 0.90084 0.92862 0.90487 0.90365 0.82739 0.84088 0.91471 0.88245 0.77427 0.93247 0.87213 0.88646 0.85192 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.56 71.98 0.69 -1.08 16 2 C 0.07 0.90 3.34 30.59 0.10 1.00 16 3 C -0.17 -1.79 9.53 71.98 0.69 -1.11 16 4 O -0.40 -7.25 9.97 -148.98 -1.49 -8.74 16 5 C 0.10 1.50 5.86 71.24 0.42 1.92 16 6 C -0.07 -1.37 5.52 -19.81 -0.11 -1.48 16 7 C -0.11 -2.33 9.68 22.23 0.22 -2.12 16 8 C -0.11 -3.11 9.09 22.53 0.20 -2.91 16 9 C -0.14 -4.68 5.87 -20.09 -0.12 -4.80 16 10 C 0.57 23.16 7.98 86.79 0.69 23.86 16 11 O -0.59 -27.53 17.11 -3.89 -0.07 -27.60 16 12 N -0.63 -25.58 3.61 -843.03 -3.04 -28.62 16 13 C 0.12 5.35 8.23 86.49 0.71 6.06 16 14 C 0.19 8.58 1.07 -10.88 -0.01 8.57 16 15 O -0.57 -25.98 13.46 -148.98 -2.01 -27.99 16 16 C -0.62 -32.06 9.04 25.60 0.23 -31.83 16 17 H 0.03 1.99 8.05 -2.91 -0.02 1.97 16 18 C -0.01 -0.37 5.44 84.65 0.46 0.09 16 19 N -0.92 -52.59 13.70 21.45 0.29 -52.29 16 20 Si 1.06 41.28 24.65 68.60 1.69 42.97 16 21 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.25 -8.45 5.75 99.48 0.57 -7.88 16 23 H -0.23 -7.34 6.39 99.48 0.64 -6.71 16 24 C 0.06 2.42 3.26 86.44 0.28 2.70 16 25 C -0.07 -2.12 9.59 22.53 0.22 -1.91 16 26 C -0.10 -2.23 9.68 22.23 0.22 -2.01 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.69 7.79 -2.38 -0.02 0.67 16 31 H 0.06 0.57 7.87 -2.39 -0.02 0.55 16 32 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.85 7.81 -2.38 -0.02 0.83 16 35 H 0.08 0.87 8.03 -2.38 -0.02 0.85 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.14 3.99 3.90 -2.91 -0.01 3.98 16 38 H 0.07 2.96 8.14 -2.39 -0.02 2.95 16 39 H 0.10 4.09 8.09 -2.38 -0.02 4.07 16 40 H 0.37 15.36 5.85 -74.06 -0.43 14.93 16 41 H 0.26 15.11 8.73 -92.70 -0.81 14.30 16 42 H 0.11 3.92 8.08 -2.39 -0.02 3.90 16 43 H 0.10 3.22 5.08 -2.39 -0.01 3.21 16 44 H 0.13 3.75 7.68 -2.91 -0.02 3.72 16 45 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -69.17 366.41 0.59 -68.57 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.33 Total: 38.74 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 4.88 Total: -5.04 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -2.75 Total: -80.92 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -3.56 Total: -64.33 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.69 Total: 42.97 kcal Total: -69.17 0.59 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356571037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.857 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds