Wall clock time and date at job start Tue Mar 31 2020 13:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42893 * 113.99916 * 2 1 4 4 C 1.53007 * 109.46696 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47054 * 63.13570 * 4 3 2 6 6 C 1.46498 * 119.99353 * 246.50135 * 5 4 3 7 7 H 1.09003 * 110.01209 * 185.10285 * 6 5 4 8 8 C 1.53871 * 110.03406 * 306.48725 * 6 5 4 9 9 C 1.54277 * 106.59696 * 119.28861 * 8 6 5 10 10 C 1.54891 * 104.30922 * 336.32487 * 9 8 6 11 11 H 1.08994 * 110.76018 * 279.69280 * 10 9 8 12 12 C 1.52997 * 110.75179 * 156.32294 * 10 9 8 13 13 C 1.54263 * 110.03507 * 63.65884 * 6 5 4 14 14 S 1.65594 * 120.00124 * 66.49800 * 5 4 3 15 15 O 1.42094 * 104.27994 * 26.07565 * 14 5 4 16 16 O 1.42109 * 104.27494 * 153.93165 * 14 5 4 17 17 C 1.81400 * 104.45154 * 270.00057 * 14 5 4 18 18 C 1.52999 * 109.47333 * 180.02562 * 17 14 5 19 19 C 1.50701 * 109.46938 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00499 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99767 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99831 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00147 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46927 * 60.00030 * 23 21 19 25 25 H 1.48494 * 109.47304 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47198 * 300.00295 * 23 21 19 27 27 H 1.08997 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46696 * 300.00097 * 1 2 3 29 29 H 1.08995 * 109.46995 * 59.99787 * 1 2 3 30 30 H 1.08998 * 109.47506 * 60.00195 * 3 2 1 31 31 H 1.09001 * 109.47783 * 299.99843 * 3 2 1 32 32 H 1.08993 * 109.47347 * 303.13220 * 4 3 2 33 33 H 1.09002 * 109.46702 * 183.12699 * 4 3 2 34 34 H 1.08997 * 110.03495 * 0.02562 * 8 6 5 35 35 H 1.09001 * 110.03822 * 238.57162 * 8 6 5 36 36 H 1.08992 * 110.48306 * 95.06997 * 9 8 6 37 37 H 1.09001 * 110.48438 * 217.58358 * 9 8 6 38 38 H 1.09000 * 109.47234 * 61.45197 * 12 10 9 39 39 H 1.09003 * 109.47331 * 181.45353 * 12 10 9 40 40 H 1.09000 * 109.47448 * 301.45458 * 12 10 9 41 41 H 1.09002 * 110.48511 * 23.00261 * 13 6 5 42 42 H 1.09005 * 110.48687 * 145.51271 * 13 6 5 43 43 H 1.09003 * 109.47090 * 300.00460 * 17 14 5 44 44 H 1.08999 * 109.47122 * 60.00221 * 17 14 5 45 45 H 1.08998 * 109.46931 * 299.99665 * 18 17 14 46 46 H 1.08999 * 109.47096 * 59.99886 * 18 17 14 47 47 H 0.97003 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9735 0.5235 -1.2313 6 6 4.5917 -0.8033 -1.1705 7 1 4.9348 -1.1007 -2.1614 8 6 5.7738 -0.7895 -0.1856 9 6 5.4384 -1.8121 0.9198 10 6 3.8933 -1.9167 0.8886 11 1 3.4388 -1.0827 1.4234 12 6 3.4286 -3.2534 1.4699 13 6 3.5792 -1.8338 -0.6294 14 16 3.7698 1.2760 -2.6922 15 8 3.7571 2.6609 -2.3744 16 8 4.7869 0.7227 -3.5162 17 6 2.1316 0.7369 -3.2545 18 6 1.8237 1.3722 -4.6119 19 6 0.4624 0.9248 -5.0787 20 1 -0.1246 0.2547 -4.4682 21 6 -0.0340 1.3718 -6.2849 22 7 0.6802 2.1890 -7.0277 23 14 -1.7210 0.8167 -6.8639 24 1 -2.7467 1.2373 -5.8757 25 1 -2.0199 1.4334 -8.1813 26 1 -1.7374 -0.6624 -6.9952 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 3.8530 0.5960 0.8614 33 1 3.9787 2.1788 0.0567 34 1 5.8874 0.2042 0.2476 35 1 6.6905 -1.0811 -0.6982 36 1 5.8908 -2.7781 0.6957 37 1 5.7767 -1.4494 1.8904 38 1 3.7438 -3.3262 2.5108 39 1 2.3418 -3.3157 1.4142 40 1 3.8690 -4.0708 0.8989 41 1 2.5586 -1.4859 -0.7890 42 1 3.7298 -2.8028 -1.1053 43 1 2.1196 -0.3488 -3.3508 44 1 1.3787 1.0457 -2.5293 45 1 1.8357 2.4579 -4.5160 46 1 2.5766 1.0631 -5.3369 47 1 0.3310 2.5032 -7.8764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360031186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:19 Heat of formation + Delta-G solvation = -156.825576 kcal Electronic energy + Delta-G solvation = -27449.016930 eV Core-core repulsion = 23757.596121 eV Total energy + Delta-G solvation = -3691.420809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28371 -38.67979 -38.08007 -37.04936 -35.92679 -35.67604 -33.15900 -31.91263 -30.38706 -28.59992 -27.63616 -26.94520 -25.47686 -24.24877 -23.13731 -21.30771 -20.68442 -19.75363 -19.06726 -18.38175 -17.78260 -17.15890 -17.05554 -16.65011 -16.54112 -16.43127 -15.71850 -15.60630 -15.28473 -14.97445 -14.51583 -14.36700 -13.99596 -13.76865 -13.58041 -13.57204 -13.41238 -13.23668 -13.09434 -12.93359 -12.83088 -12.70637 -12.65505 -12.41385 -12.26020 -12.18857 -12.03049 -11.85870 -11.66933 -11.63610 -11.43338 -11.27391 -11.12976 -11.08461 -10.65588 -10.47431 -9.86925 -8.26845 -6.41204 -0.71133 1.39062 1.42766 1.51007 1.71604 2.36831 2.79498 2.85772 3.06136 3.15686 3.56762 3.76717 3.92384 3.97045 4.05737 4.09642 4.17031 4.37947 4.45576 4.50687 4.53710 4.62589 4.63976 4.70163 4.73674 4.76718 4.81741 4.82972 4.91809 4.97121 5.04352 5.13573 5.18864 5.23821 5.24748 5.25762 5.29601 5.46072 5.50755 5.66296 5.67644 5.74088 5.86945 6.04815 6.25928 6.71365 7.28818 8.85399 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.004434 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.011218 B = 6314.021304 C = 6960.381285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.379 6.379 3 C 0.020 3.980 4 C 0.118 3.882 5 N -0.978 5.978 6 C 0.134 3.866 7 H 0.082 0.918 8 C -0.131 4.131 9 C -0.113 4.113 10 C -0.087 4.087 11 H 0.082 0.918 12 C -0.137 4.137 13 C -0.139 4.139 14 S 2.604 3.396 15 O -0.991 6.991 16 O -0.997 6.997 17 C -0.583 4.583 18 C 0.025 3.975 19 C -0.536 4.536 20 H 0.074 0.926 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.283 1.283 26 H -0.264 1.264 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.004 0.996 46 H 0.002 0.998 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -9.057 21.852 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.298 6.298 3 C -0.058 4.058 4 C -0.007 4.007 5 N -0.815 5.815 6 C 0.029 3.971 7 H 0.100 0.900 8 C -0.170 4.170 9 C -0.151 4.151 10 C -0.105 4.105 11 H 0.100 0.900 12 C -0.195 4.195 13 C -0.178 4.178 14 S 2.703 3.297 15 O -0.982 6.982 16 O -0.987 6.987 17 C -0.715 4.715 18 C -0.014 4.014 19 C -0.575 4.575 20 H 0.092 0.908 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.797 3.203 24 H -0.186 1.186 25 H -0.209 1.209 26 H -0.188 1.188 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.143 0.857 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.022 0.978 46 H 0.021 0.979 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.830 -8.535 21.301 23.450 hybrid contribution -1.454 0.108 -1.028 1.784 sum 3.376 -8.427 20.273 22.213 Atomic orbital electron populations 1.22900 0.80743 1.03590 1.00299 1.87903 1.19987 1.26549 1.95382 1.23302 0.94669 0.85987 1.01819 1.21648 0.91754 0.99222 0.88049 1.57412 1.74387 1.29192 1.20547 1.21750 0.93689 0.80955 1.00748 0.89989 1.22528 0.96903 1.00972 0.96631 1.22436 0.95762 0.98803 0.98094 1.22127 0.95082 0.98511 0.94774 0.89951 1.21686 1.00911 0.96155 1.00707 1.23078 1.00399 0.97720 0.96574 1.04906 0.77378 0.73745 0.73675 1.93473 1.88107 1.33143 1.83437 1.93478 1.56035 1.80114 1.69057 1.30472 1.21219 1.11854 1.07933 1.18791 0.98307 0.94902 0.89419 1.21418 1.01787 1.29330 1.04971 0.90816 1.26111 1.02416 0.94817 0.96707 1.70104 1.39934 1.33974 1.13391 0.85376 0.78463 0.78932 0.77565 1.18637 1.20878 1.18826 0.88556 0.92453 0.95237 0.88893 0.95025 0.85715 0.88787 0.90599 0.91140 0.91081 0.90460 0.92088 0.93056 0.92885 0.89080 0.91131 0.84820 0.84763 0.97779 0.97920 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.38 -8.11 7.52 -148.98 -1.12 -9.23 16 3 C 0.02 0.44 5.64 71.98 0.41 0.85 16 4 C 0.12 2.54 4.64 86.38 0.40 2.94 16 5 N -0.98 -26.98 2.57 -489.64 -1.26 -28.24 16 6 C 0.13 3.28 3.32 45.71 0.15 3.43 16 7 H 0.08 2.32 6.84 -2.39 -0.02 2.31 16 8 C -0.13 -2.51 5.96 31.32 0.19 -2.32 16 9 C -0.11 -1.64 6.26 31.67 0.20 -1.45 16 10 C -0.09 -1.37 2.95 -9.38 -0.03 -1.40 16 11 H 0.08 1.30 6.21 -2.39 -0.01 1.29 16 12 C -0.14 -1.90 9.29 71.98 0.67 -1.23 16 13 C -0.14 -2.89 5.41 31.79 0.17 -2.72 16 14 S 2.60 100.71 4.81 -56.49 -0.27 100.44 16 15 O -0.99 -42.60 16.80 -127.65 -2.14 -44.75 16 16 O -1.00 -44.44 16.54 -127.65 -2.11 -46.55 16 17 C -0.58 -23.77 5.86 71.98 0.42 -23.35 16 18 C 0.02 1.33 4.98 29.85 0.15 1.48 16 19 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 20 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 22 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 23 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 0.85 5.61 -2.39 -0.01 0.83 16 32 H 0.12 2.02 4.74 -2.39 -0.01 2.01 16 33 H 0.09 2.01 7.67 -2.39 -0.02 2.00 16 34 H 0.08 1.40 6.97 -2.39 -0.02 1.39 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 41 H 0.09 2.11 5.20 -2.39 -0.01 2.10 16 42 H 0.07 1.41 8.05 -2.38 -0.02 1.39 16 43 H 0.13 5.00 8.14 -2.39 -0.02 4.98 16 44 H 0.13 4.96 6.02 -2.39 -0.01 4.94 16 45 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -73.51 371.36 1.01 -72.50 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.94 Total: 19.25 kcal Atomic # 6 Polarization: -56.40 SS G_CDS: 4.67 Total: -51.73 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -0.97 Total: -85.43 kcal Atomic # 8 Polarization: -95.15 SS G_CDS: -5.38 Total: -100.53 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 100.71 SS G_CDS: -0.27 Total: 100.44 kcal Total: -73.51 1.01 -72.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360031186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.326 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds