Wall clock time and date at job start Tue Mar 31 2020 12:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99669 * 2 1 4 4 O 1.20827 * 119.99970 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00061 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47138 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46968 * 299.99979 * 5 3 2 8 8 N 1.46496 * 109.47217 * 300.00036 * 7 5 3 9 9 C 1.34777 * 119.99987 * 180.02562 * 8 7 5 10 10 O 1.21274 * 120.00128 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99716 * 179.97438 * 9 8 7 12 12 C 1.53007 * 109.46826 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46828 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00072 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00418 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47387 * 119.99441 * 17 15 13 20 20 H 1.48494 * 109.47405 * 239.99834 * 17 15 13 21 21 C 1.50706 * 109.47046 * 59.99623 * 5 3 2 22 22 C 1.38237 * 119.99744 * 60.00672 * 21 5 3 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 5 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 240.01882 * 21 5 3 27 27 H 1.08999 * 109.47144 * 299.99727 * 1 2 3 28 28 H 1.08995 * 109.47693 * 60.00416 * 1 2 3 29 29 H 1.09005 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47023 * 300.00041 * 6 5 3 31 31 H 1.09001 * 109.46677 * 59.99861 * 6 5 3 32 32 H 1.09000 * 109.46795 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47464 * 60.00345 * 7 5 3 34 34 H 1.09000 * 109.47424 * 179.97438 * 7 5 3 35 35 H 0.97005 * 119.99840 * 0.02562 * 8 7 5 36 36 H 1.08996 * 109.47658 * 300.00156 * 11 9 8 37 37 H 1.09004 * 109.46871 * 60.00670 * 11 9 8 38 38 H 1.09004 * 109.46930 * 300.00176 * 12 11 9 39 39 H 1.08996 * 109.47038 * 60.00350 * 12 11 9 40 40 H 0.96998 * 120.00108 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.00088 * 359.97438 * 22 21 5 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07998 * 119.99975 * 0.02562 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7423 -0.0011 7 6 4.1138 0.5813 1.2483 8 7 3.5904 1.2450 2.4448 9 6 3.9406 0.8023 3.6686 10 8 4.6885 -0.1458 3.7794 11 6 3.4026 1.4856 4.8995 12 6 3.9511 0.7925 6.1484 13 6 3.4126 1.4753 7.3791 14 1 2.7462 2.3195 7.2805 15 6 3.7715 1.0231 8.6312 16 7 4.5834 -0.0045 8.7514 17 14 3.1047 1.8699 10.1568 18 1 2.2190 2.9915 9.7532 19 1 2.3311 0.8944 10.9663 20 1 4.2341 2.3974 10.9638 21 6 4.1046 0.5921 -1.2314 22 6 3.7460 1.0465 -2.4867 23 6 4.2394 0.4197 -3.6157 24 6 5.0923 -0.6608 -3.4894 25 6 5.4471 -1.1182 -2.2341 26 6 4.9569 -0.4889 -1.1051 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.6099 3.2361 -0.8910 31 1 3.6105 3.2365 0.8889 32 1 5.0885 2.7993 -0.0011 33 1 3.8049 -0.4641 1.2482 34 1 5.2023 0.6379 1.2477 35 1 2.9918 2.0032 2.3561 36 1 3.7115 2.5309 4.8992 37 1 2.3140 1.4284 4.9002 38 1 3.6424 -0.2529 6.1489 39 1 5.0395 0.8500 6.1474 40 1 4.8357 -0.3230 9.6322 41 1 3.0796 1.8907 -2.5854 42 1 3.9588 0.7745 -4.5964 43 1 5.4781 -1.1502 -4.3715 44 1 6.1100 -1.9651 -2.1354 45 1 5.2366 -0.8443 -0.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360446646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:45 Heat of formation + Delta-G solvation = -108.707009 kcal Electronic energy + Delta-G solvation = -26788.386227 eV Core-core repulsion = 22963.608044 eV Total energy + Delta-G solvation = -3824.778183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40270 -39.53767 -39.04447 -36.96977 -36.01648 -33.44801 -33.23168 -31.34739 -30.95013 -29.72972 -28.26752 -27.15650 -25.45173 -24.25002 -22.80261 -22.36388 -21.45192 -20.06780 -19.69578 -18.00527 -17.42215 -17.08471 -16.63722 -16.47169 -15.74992 -15.59412 -15.24208 -14.97913 -14.77482 -14.40858 -14.22828 -14.02892 -13.63169 -13.44659 -13.28966 -13.06020 -12.92376 -12.48617 -12.39046 -12.26190 -12.14199 -12.01911 -11.78661 -11.34282 -11.15252 -11.09053 -11.00385 -10.93695 -10.65057 -10.57118 -9.95630 -9.66915 -9.23068 -9.19414 -9.09073 -9.02117 -8.87266 -8.31433 -5.95419 -3.99558 0.95170 1.09507 1.89932 2.42566 3.22755 3.33260 3.36451 3.40961 3.44248 3.45744 4.18666 4.22982 4.35354 4.48552 4.61148 4.69682 4.73748 4.83774 4.89308 4.98604 5.14843 5.24837 5.30765 5.36200 5.39653 5.39964 5.50197 5.53856 5.63631 5.71836 5.74953 5.86137 6.12274 6.13197 6.20667 6.22432 6.22994 6.24921 6.59282 6.65527 6.88851 7.45036 7.75310 7.79373 7.86998 8.07842 8.39409 8.73271 9.09043 9.63981 11.15575 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.002695 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.994980 B =10387.803757 C =11017.707698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.347 6.347 3 C 0.476 3.524 4 O -0.501 6.501 5 C -0.020 4.020 6 C -0.131 4.131 7 C 0.129 3.871 8 N -0.748 5.748 9 C 0.513 3.487 10 O -0.531 6.531 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.074 4.074 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.397 0.603 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 1.233 -27.664 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.263 6.263 3 C 0.318 3.682 4 O -0.388 6.388 5 C -0.022 4.022 6 C -0.188 4.188 7 C 0.005 3.995 8 N -0.404 5.404 9 C 0.302 3.698 10 O -0.405 6.405 11 C -0.170 4.170 12 C 0.000 4.000 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.075 4.075 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.132 4.132 26 C -0.122 4.122 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.231 0.769 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.817 0.702 -27.428 27.581 hybrid contribution -0.912 0.827 0.731 1.432 sum -3.730 1.529 -26.697 26.999 Atomic orbital electron populations 1.23321 0.76066 1.03974 1.02578 1.86538 1.23503 1.32817 1.83416 1.23363 0.91171 0.81669 0.72014 1.90678 1.66745 1.36253 1.45120 1.19724 0.87638 0.99338 0.95481 1.21820 1.02387 0.90752 1.03868 1.21409 0.99574 0.96921 0.81635 1.46320 1.52186 1.36252 1.05652 1.21562 0.80183 0.83785 0.84299 1.90669 1.35460 1.27762 1.86650 1.21882 1.01311 1.00647 0.93174 1.18906 0.96903 0.95845 0.88389 1.21260 1.28824 1.15340 0.90996 0.92563 1.25026 0.95172 0.95086 0.99136 1.70009 1.34491 1.24976 1.23364 0.86538 0.78763 0.79484 0.83194 1.19761 1.21024 1.21015 1.19230 0.99009 0.96808 0.92430 1.20973 1.00055 0.99909 0.91868 1.21090 0.97838 0.96360 0.98293 1.21222 0.97851 0.96763 0.97623 1.21196 0.99884 0.99870 0.92290 1.21260 0.96519 0.94639 0.99812 0.91538 0.91961 0.87926 0.91112 0.90832 0.90361 0.90015 0.89684 0.76884 0.90132 0.90278 0.95790 0.95746 0.93017 0.86168 0.85884 0.85930 0.85537 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.13 10.39 -39.27 -0.41 -4.54 16 3 C 0.48 5.75 5.44 36.00 0.20 5.95 16 4 O -0.50 -6.76 15.73 -18.75 -0.29 -7.06 16 5 C -0.02 -0.22 0.56 -156.81 -0.09 -0.30 16 6 C -0.13 -1.24 7.40 37.16 0.28 -0.97 16 7 C 0.13 1.62 3.16 -4.05 -0.01 1.61 16 8 N -0.75 -10.87 5.00 -60.30 -0.30 -11.17 16 9 C 0.51 9.89 7.83 -10.98 -0.09 9.81 16 10 O -0.53 -12.31 15.98 5.56 0.09 -12.22 16 11 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 12 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 13 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 21 C -0.07 -0.73 4.69 -104.62 -0.49 -1.22 16 22 C -0.11 -0.99 8.82 -39.58 -0.35 -1.33 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.10 -1.00 8.98 -39.58 -0.36 -1.35 16 27 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.63 7.34 -51.93 -0.38 0.25 16 31 H 0.07 0.73 6.82 -51.93 -0.35 0.37 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 34 H 0.09 1.05 7.51 -51.93 -0.39 0.66 16 35 H 0.40 5.09 6.89 -40.82 -0.28 4.81 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 1.01 7.58 -52.48 -0.40 0.61 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.13 1.27 5.89 -52.49 -0.31 0.96 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -35.32 378.07 -7.92 -43.24 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.69 Total: 2.10 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.72 Total: -6.06 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.43 Total: -37.94 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.61 Total: -23.81 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.32 -7.92 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360446646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.469 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds