Wall clock time and date at job start Tue Mar 31 2020 12:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99669 * 2 1 4 4 O 1.20827 * 119.99970 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00061 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47138 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46968 * 299.99979 * 5 3 2 8 8 N 1.46496 * 109.47217 * 300.00036 * 7 5 3 9 9 C 1.34777 * 119.99987 * 180.02562 * 8 7 5 10 10 O 1.21274 * 120.00128 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99716 * 179.97438 * 9 8 7 12 12 C 1.53007 * 109.46826 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46828 * 180.02562 * 12 11 9 14 14 H 1.08005 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00072 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00418 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47387 * 119.99441 * 17 15 13 20 20 H 1.48494 * 109.47405 * 239.99834 * 17 15 13 21 21 C 1.50706 * 109.47046 * 59.99623 * 5 3 2 22 22 C 1.38237 * 119.99744 * 60.00672 * 21 5 3 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 5 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00223 * 240.01882 * 21 5 3 27 27 H 1.08999 * 109.47144 * 299.99727 * 1 2 3 28 28 H 1.08995 * 109.47693 * 60.00416 * 1 2 3 29 29 H 1.09005 * 109.46747 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47023 * 300.00041 * 6 5 3 31 31 H 1.09001 * 109.46677 * 59.99861 * 6 5 3 32 32 H 1.09000 * 109.46795 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47464 * 60.00345 * 7 5 3 34 34 H 1.09000 * 109.47424 * 179.97438 * 7 5 3 35 35 H 0.97005 * 119.99840 * 0.02562 * 8 7 5 36 36 H 1.08996 * 109.47658 * 300.00156 * 11 9 8 37 37 H 1.09004 * 109.46871 * 60.00670 * 11 9 8 38 38 H 1.09004 * 109.46930 * 300.00176 * 12 11 9 39 39 H 1.08996 * 109.47038 * 60.00350 * 12 11 9 40 40 H 0.96998 * 120.00108 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.00088 * 359.97438 * 22 21 5 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07998 * 119.99975 * 0.02562 * 26 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7423 -0.0011 7 6 4.1138 0.5813 1.2483 8 7 3.5904 1.2450 2.4448 9 6 3.9406 0.8023 3.6686 10 8 4.6885 -0.1458 3.7794 11 6 3.4026 1.4856 4.8995 12 6 3.9511 0.7925 6.1484 13 6 3.4126 1.4753 7.3791 14 1 2.7462 2.3195 7.2805 15 6 3.7715 1.0231 8.6312 16 7 4.5834 -0.0045 8.7514 17 14 3.1047 1.8699 10.1568 18 1 2.2190 2.9915 9.7532 19 1 2.3311 0.8944 10.9663 20 1 4.2341 2.3974 10.9638 21 6 4.1046 0.5921 -1.2314 22 6 3.7460 1.0465 -2.4867 23 6 4.2394 0.4197 -3.6157 24 6 5.0923 -0.6608 -3.4894 25 6 5.4471 -1.1182 -2.2341 26 6 4.9569 -0.4889 -1.1051 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.6099 3.2361 -0.8910 31 1 3.6105 3.2365 0.8889 32 1 5.0885 2.7993 -0.0011 33 1 3.8049 -0.4641 1.2482 34 1 5.2023 0.6379 1.2477 35 1 2.9918 2.0032 2.3561 36 1 3.7115 2.5309 4.8992 37 1 2.3140 1.4284 4.9002 38 1 3.6424 -0.2529 6.1489 39 1 5.0395 0.8500 6.1474 40 1 4.8357 -0.3230 9.6322 41 1 3.0796 1.8907 -2.5854 42 1 3.9588 0.7745 -4.5964 43 1 5.4781 -1.1502 -4.3715 44 1 6.1100 -1.9651 -2.1354 45 1 5.2366 -0.8443 -0.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360446646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:44 Heat of formation + Delta-G solvation = -130.348628 kcal Electronic energy + Delta-G solvation = -26789.324678 eV Core-core repulsion = 22963.608044 eV Total energy + Delta-G solvation = -3825.716634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31602 -40.66898 -40.14345 -37.89437 -37.06538 -35.56508 -34.43635 -32.95613 -31.95621 -30.50047 -29.03419 -28.51644 -27.05510 -25.22333 -23.87991 -23.19717 -22.89276 -21.38563 -20.79364 -18.92575 -18.87730 -18.18073 -17.90825 -17.33953 -17.21876 -16.80032 -16.63550 -16.39161 -15.72204 -15.69211 -15.26753 -14.83048 -14.78678 -14.53298 -14.29361 -14.15940 -14.01705 -13.91095 -13.57791 -13.24483 -13.20643 -13.08250 -12.94525 -12.84578 -12.62306 -12.45061 -12.07122 -11.94120 -11.85739 -11.82967 -11.65003 -11.53813 -11.28895 -10.80998 -10.57817 -10.22284 -9.85521 -9.74814 -8.18109 -6.31739 0.29277 0.45566 0.96247 1.42137 1.43304 1.56598 1.60135 1.66297 2.09072 2.43589 2.79815 3.14960 3.29483 3.40038 3.50973 3.80416 3.98169 4.07936 4.09985 4.22067 4.27901 4.28204 4.41728 4.46075 4.53847 4.54334 4.60450 4.61270 4.64398 4.70078 4.78853 4.98908 5.04640 5.08293 5.10791 5.26282 5.29014 5.50154 5.52419 5.55089 5.60483 5.63297 5.85494 6.04360 6.17908 6.40931 6.55032 6.86347 7.23458 7.38290 8.94698 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.002695 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.994980 B =10387.803757 C =11017.707698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.517 6.517 5 C -0.010 4.010 6 C -0.131 4.131 7 C 0.130 3.870 8 N -0.726 5.726 9 C 0.517 3.483 10 O -0.578 6.578 11 C -0.121 4.121 12 C 0.043 3.957 13 C -0.542 4.542 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.936 5.936 17 Si 0.973 3.027 18 H -0.255 1.255 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.085 4.085 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.409 0.591 36 H 0.105 0.895 37 H 0.100 0.900 38 H -0.016 1.016 39 H -0.014 1.014 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 2.652 -29.135 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.406 6.406 5 C -0.012 4.012 6 C -0.188 4.188 7 C 0.006 3.994 8 N -0.380 5.380 9 C 0.306 3.694 10 O -0.456 6.456 11 C -0.161 4.161 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.092 0.908 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.178 1.178 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.245 0.755 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.002 0.998 39 H 0.005 0.995 40 H 0.072 0.928 41 H 0.142 0.858 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.950 2.155 -28.949 29.297 hybrid contribution -0.578 0.324 1.077 1.264 sum -4.528 2.479 -27.873 28.347 Atomic orbital electron populations 1.23576 0.74656 1.05640 1.02784 1.86535 1.25048 1.32790 1.83163 1.23604 0.91629 0.81512 0.71497 1.90664 1.67209 1.36677 1.46012 1.19650 0.86822 0.99937 0.94773 1.21857 1.03033 0.89850 1.04085 1.21485 0.99829 0.96529 0.81507 1.46021 1.51187 1.35919 1.04901 1.21251 0.79690 0.83102 0.85361 1.90658 1.37754 1.29847 1.87385 1.21660 1.02236 1.01139 0.91048 1.18686 0.94674 0.94371 0.91724 1.21728 1.28894 1.15747 0.91651 0.90815 1.26113 0.95313 0.95717 1.03232 1.70176 1.36120 1.26889 1.24441 0.85288 0.78241 0.78608 0.78201 1.17807 1.20589 1.20539 1.19191 0.99761 0.97297 0.92364 1.21090 1.00363 1.00291 0.91879 1.21411 0.97228 0.96043 0.98937 1.21558 0.97198 0.96481 0.98137 1.21449 0.99932 1.00202 0.92296 1.21313 0.97308 0.95162 1.00129 0.91992 0.91102 0.85656 0.90287 0.91209 0.89424 0.90959 0.89322 0.75473 0.87689 0.88205 0.99759 0.99543 0.92828 0.85817 0.83560 0.83422 0.84069 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.30 10.39 -51.44 -0.53 -8.84 16 3 C 0.47 11.09 5.44 71.23 0.39 11.47 16 4 O -0.52 -13.42 15.73 21.96 0.35 -13.07 16 5 C -0.01 -0.21 0.56 -53.67 -0.03 -0.24 16 6 C -0.13 -2.33 7.40 71.98 0.53 -1.80 16 7 C 0.13 3.27 3.16 86.38 0.27 3.55 16 8 N -0.73 -20.77 5.00 -463.07 -2.32 -23.09 16 9 C 0.52 20.20 7.83 87.66 0.69 20.89 16 10 O -0.58 -27.91 15.98 -3.01 -0.05 -27.96 16 11 C -0.12 -4.96 5.64 29.85 0.17 -4.79 16 12 C 0.04 2.41 4.26 29.85 0.13 2.54 16 13 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 14 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 15 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 16 N -0.94 -59.49 13.29 21.45 0.28 -59.21 16 17 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 18 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C -0.09 -1.62 4.69 -19.86 -0.09 -1.71 16 22 C -0.12 -1.94 8.82 22.27 0.20 -1.74 16 23 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 24 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 25 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 26 C -0.12 -2.27 8.98 22.27 0.20 -2.07 16 27 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 29 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.28 7.34 -2.39 -0.02 1.26 16 31 H 0.07 1.28 6.82 -2.39 -0.02 1.26 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 2.00 7.48 -2.39 -0.02 1.98 16 34 H 0.09 2.21 7.51 -2.39 -0.02 2.20 16 35 H 0.41 9.96 6.89 -92.70 -0.64 9.32 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.10 3.67 8.14 -2.38 -0.02 3.65 16 38 H -0.02 -1.01 8.10 -2.38 -0.02 -1.03 16 39 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 16 40 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.12 1.88 7.58 -2.91 -0.02 1.86 16 42 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.13 2.47 5.89 -2.91 -0.02 2.45 16 Total: -1.00 -78.42 378.07 5.12 -73.30 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.35 Total: 19.44 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.01 Total: -7.22 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.03 Total: -82.30 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.24 Total: -49.87 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -78.42 5.12 -73.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360446646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.050 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds