Wall clock time and date at job start Tue Mar 31 2020 13:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47248 * 2 1 4 4 O 1.42898 * 109.47103 * 119.99743 * 2 1 3 5 5 C 1.42907 * 114.00155 * 90.00242 * 4 2 1 6 6 H 1.09004 * 112.90198 * 18.74798 * 5 4 2 7 7 C 1.53775 * 113.61537 * 247.49988 * 5 4 2 8 8 C 1.53775 * 87.08118 * 220.01538 * 7 5 4 9 9 H 1.09002 * 113.61553 * 139.98368 * 8 7 5 10 10 N 1.46502 * 113.61744 * 270.88230 * 8 7 5 11 11 S 1.65600 * 120.00206 * 242.50136 * 10 8 7 12 12 O 1.42100 * 104.27561 * 181.06823 * 11 10 8 13 13 O 1.42098 * 104.27634 * 308.92369 * 11 10 8 14 14 C 1.81394 * 104.45017 * 64.99672 * 11 10 8 15 15 C 1.52998 * 109.47121 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47377 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99750 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99542 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47027 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46863 * 120.00008 * 20 18 16 23 23 H 1.48496 * 109.46962 * 240.00068 * 20 18 16 24 24 C 1.53776 * 113.61694 * 149.99699 * 5 4 2 25 25 C 1.52997 * 113.61854 * 254.53196 * 24 5 4 26 26 C 1.53004 * 113.61382 * 25.35573 * 24 5 4 27 27 H 1.09007 * 109.47158 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47577 * 300.00008 * 1 2 3 29 29 H 1.09001 * 109.47154 * 60.00031 * 1 2 3 30 30 H 1.08995 * 109.47577 * 239.99992 * 2 1 3 31 31 H 1.08997 * 109.47599 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47018 * 300.00052 * 3 2 1 33 33 H 1.09004 * 109.46755 * 59.99828 * 3 2 1 34 34 H 1.09003 * 113.61787 * 334.56595 * 7 5 4 35 35 H 1.09000 * 113.61584 * 105.37927 * 7 5 4 36 36 H 0.97008 * 119.99720 * 62.49445 * 10 8 7 37 37 H 1.08997 * 109.47173 * 300.00220 * 14 11 10 38 38 H 1.09003 * 109.47373 * 60.00269 * 14 11 10 39 39 H 1.09006 * 109.46884 * 299.99862 * 15 14 11 40 40 H 1.08995 * 109.47507 * 59.99567 * 15 14 11 41 41 H 0.97002 * 119.99315 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47153 * 79.50511 * 25 24 5 43 43 H 1.09001 * 109.46832 * 319.50702 * 25 24 5 44 44 H 1.09004 * 109.47261 * 199.50683 * 25 24 5 45 45 H 1.09005 * 109.46715 * 279.13297 * 26 24 5 46 46 H 1.08995 * 109.47327 * 39.12853 * 26 24 5 47 47 H 1.08999 * 109.47409 * 159.13533 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 1 2.2723 -2.3669 -0.0599 7 6 1.2205 -2.9429 1.7995 8 6 2.4061 -3.8799 2.0841 9 1 2.4247 -4.2632 3.1043 10 7 2.5791 -4.9300 1.0773 11 16 2.4343 -6.5224 1.5084 12 8 2.6860 -7.2354 0.3053 13 8 3.2904 -6.6598 2.6342 14 6 0.6984 -6.7014 2.0032 15 6 0.4360 -8.1472 2.4292 16 6 -1.0064 -8.2961 2.8397 17 1 -1.6695 -7.4446 2.8009 18 6 -1.4791 -9.5193 3.2657 19 7 -0.6715 -10.5561 3.3133 20 14 -3.2669 -9.7037 3.7751 21 1 -3.9596 -8.3980 3.6317 22 1 -3.9270 -10.7128 2.9084 23 1 -3.3349 -10.1467 5.1909 24 6 3.3194 -2.6619 1.8668 25 6 4.5993 -2.9856 1.0936 26 6 3.5824 -1.8559 3.1405 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.8331 -2.4464 2.6892 35 1 0.4370 -3.3992 1.1945 36 1 2.7783 -4.6926 0.1581 37 1 0.4877 -6.0330 2.8380 38 1 0.0528 -6.4472 1.1624 39 1 0.6467 -8.8159 1.5946 40 1 1.0815 -8.4011 3.2700 41 1 -1.0043 -11.4167 3.6127 42 1 5.1678 -2.0697 0.9323 43 1 4.3405 -3.4269 0.1311 44 1 5.2014 -3.6908 1.6666 45 1 4.2106 -0.9971 2.9037 46 1 2.6350 -1.5101 3.5538 47 1 4.0892 -2.4862 3.8712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361823478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:21 Heat of formation + Delta-G solvation = -120.628335 kcal Electronic energy + Delta-G solvation = -26107.939541 eV Core-core repulsion = 22418.088362 eV Total energy + Delta-G solvation = -3689.851179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59744 -37.60942 -36.56977 -35.45058 -33.90074 -33.33500 -32.21991 -31.17647 -30.34048 -27.55226 -27.39754 -25.60293 -24.40446 -22.65768 -21.65830 -21.56027 -19.09621 -19.00306 -17.57524 -16.84628 -16.47423 -15.90564 -15.55072 -15.49186 -15.21498 -14.85194 -14.55956 -14.15849 -13.99095 -13.64654 -13.37826 -13.32385 -12.62071 -12.57398 -12.52160 -12.47639 -12.28513 -12.20278 -12.02464 -11.80204 -11.70602 -11.62320 -11.57087 -11.50394 -11.17072 -11.10125 -10.98403 -10.96432 -10.83216 -10.41736 -10.39249 -10.26405 -9.79137 -9.48354 -9.43134 -9.01092 -8.51461 -6.13333 -4.18756 0.77046 3.08181 3.24714 3.32057 3.35385 3.45267 4.15378 4.23566 4.33359 4.37639 4.58326 4.59902 4.68612 4.76853 4.82210 4.90881 5.05905 5.11656 5.15910 5.22124 5.29706 5.39886 5.48610 5.50091 5.54318 5.58037 5.63453 5.65918 5.73517 5.75404 5.83287 5.85758 5.90990 5.93952 5.94666 6.09762 6.21027 6.35842 6.48130 7.03199 7.15302 7.29482 7.35398 7.80018 8.16765 8.84976 9.46118 10.97780 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003327 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.225714 B = 8414.673623 C = 9516.607679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.361 6.361 5 C 0.073 3.927 6 H 0.085 0.915 7 C -0.173 4.173 8 C 0.134 3.866 9 H 0.113 0.887 10 N -1.108 6.108 11 S 2.592 3.408 12 O -0.967 6.967 13 O -0.964 6.964 14 C -0.588 4.588 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.085 4.085 25 C -0.136 4.136 26 C -0.118 4.118 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.410 0.590 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 22.882 -6.115 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.280 6.280 5 C 0.014 3.986 6 H 0.103 0.897 7 C -0.212 4.212 8 C 0.025 3.975 9 H 0.131 0.869 10 N -0.862 5.862 11 S 2.689 3.311 12 O -0.958 6.958 13 O -0.954 6.954 14 C -0.721 4.721 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.087 4.087 25 C -0.193 4.193 26 C -0.176 4.176 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.244 0.756 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.823 22.104 -5.750 23.837 hybrid contribution -1.675 0.070 -0.366 1.716 sum 5.148 22.174 -6.116 23.571 Atomic orbital electron populations 1.22326 0.95995 1.02592 1.02351 1.22152 0.93710 0.93768 0.88240 1.21863 1.01671 0.94770 1.02361 1.87973 1.85545 1.19597 1.34897 1.23935 0.95897 0.80576 0.98143 0.89675 1.24048 0.97644 0.97507 1.02044 1.21553 0.95848 0.87557 0.92512 0.86929 1.55668 1.88234 1.24233 1.18085 1.05625 0.79051 0.71963 0.74437 1.93555 1.85519 1.70234 1.46483 1.93548 1.63650 1.84370 1.53821 1.30456 1.20273 1.10509 1.10899 1.18970 0.99635 0.84822 0.97735 1.21040 0.94188 0.95724 1.44918 0.91981 1.25073 0.98199 0.95824 0.95424 1.69965 1.35323 1.00870 1.46687 0.86419 0.84362 0.78222 0.78318 1.19638 1.20809 1.20788 1.22505 0.94500 0.94648 0.97024 1.21682 0.96456 1.01419 0.99767 1.21401 1.02297 0.99062 0.94821 0.92240 0.91822 0.91998 0.92436 0.92118 0.91523 0.91847 0.88064 0.90240 0.75582 0.86218 0.86139 0.94883 0.94808 0.92579 0.92472 0.92664 0.91628 0.92012 0.91734 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.53 37.15 0.35 -0.96 16 2 C 0.08 0.63 3.33 -26.73 -0.09 0.54 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 4 O -0.36 -3.51 9.12 -35.23 -0.32 -3.83 16 5 C 0.07 0.68 3.50 -25.92 -0.09 0.59 16 6 H 0.09 0.73 7.28 -51.93 -0.38 0.35 16 7 C -0.17 -1.72 7.36 -25.93 -0.19 -1.91 16 8 C 0.13 1.53 3.85 -67.12 -0.26 1.27 16 9 H 0.11 1.34 7.73 -51.93 -0.40 0.94 16 10 N -1.11 -13.86 4.96 -4.20 -0.02 -13.88 16 11 S 2.59 45.29 5.43 -107.50 -0.58 44.71 16 12 O -0.97 -19.77 18.08 -57.54 -1.04 -20.81 16 13 O -0.96 -19.67 17.58 -57.54 -1.01 -20.68 16 14 C -0.59 -11.00 6.01 37.16 0.22 -10.78 16 15 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.08 -0.85 1.34 -153.70 -0.21 -1.05 16 25 C -0.14 -1.32 8.64 37.16 0.32 -1.00 16 26 C -0.12 -1.12 8.44 37.16 0.31 -0.81 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 7.42 -51.93 -0.39 0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.97 7.64 -51.93 -0.40 0.58 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 4.30 7.53 -34.47 -0.26 4.04 16 37 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.50 6.76 -51.93 -0.35 0.15 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.61 7.22 -51.93 -0.38 0.23 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -34.26 390.19 -9.63 -43.89 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.43 Total: 1.57 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 0.18 Total: -27.27 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.72 Total: -39.58 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -2.37 Total: -45.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.29 SS G_CDS: -0.58 Total: 44.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.26 -9.63 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361823478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.740 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds