Wall clock time and date at job start Tue Mar 31 2020 13:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47248 * 2 1 4 4 O 1.42898 * 109.47103 * 119.99743 * 2 1 3 5 5 C 1.42907 * 114.00155 * 90.00242 * 4 2 1 6 6 H 1.09004 * 112.90198 * 18.74798 * 5 4 2 7 7 C 1.53775 * 113.61537 * 247.49988 * 5 4 2 8 8 C 1.53775 * 87.08118 * 220.01538 * 7 5 4 9 9 H 1.09002 * 113.61553 * 139.98368 * 8 7 5 10 10 N 1.46502 * 113.61744 * 270.88230 * 8 7 5 11 11 S 1.65600 * 120.00206 * 242.50136 * 10 8 7 12 12 O 1.42100 * 104.27561 * 181.06823 * 11 10 8 13 13 O 1.42098 * 104.27634 * 308.92369 * 11 10 8 14 14 C 1.81394 * 104.45017 * 64.99672 * 11 10 8 15 15 C 1.52998 * 109.47121 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47377 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99750 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99542 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47027 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46863 * 120.00008 * 20 18 16 23 23 H 1.48496 * 109.46962 * 240.00068 * 20 18 16 24 24 C 1.53776 * 113.61694 * 149.99699 * 5 4 2 25 25 C 1.52997 * 113.61854 * 254.53196 * 24 5 4 26 26 C 1.53004 * 113.61382 * 25.35573 * 24 5 4 27 27 H 1.09007 * 109.47158 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47577 * 300.00008 * 1 2 3 29 29 H 1.09001 * 109.47154 * 60.00031 * 1 2 3 30 30 H 1.08995 * 109.47577 * 239.99992 * 2 1 3 31 31 H 1.08997 * 109.47599 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47018 * 300.00052 * 3 2 1 33 33 H 1.09004 * 109.46755 * 59.99828 * 3 2 1 34 34 H 1.09003 * 113.61787 * 334.56595 * 7 5 4 35 35 H 1.09000 * 113.61584 * 105.37927 * 7 5 4 36 36 H 0.97008 * 119.99720 * 62.49445 * 10 8 7 37 37 H 1.08997 * 109.47173 * 300.00220 * 14 11 10 38 38 H 1.09003 * 109.47373 * 60.00269 * 14 11 10 39 39 H 1.09006 * 109.46884 * 299.99862 * 15 14 11 40 40 H 1.08995 * 109.47507 * 59.99567 * 15 14 11 41 41 H 0.97002 * 119.99315 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47153 * 79.50511 * 25 24 5 43 43 H 1.09001 * 109.46832 * 319.50702 * 25 24 5 44 44 H 1.09004 * 109.47261 * 199.50683 * 25 24 5 45 45 H 1.09005 * 109.46715 * 279.13297 * 26 24 5 46 46 H 1.08995 * 109.47327 * 39.12853 * 26 24 5 47 47 H 1.08999 * 109.47409 * 159.13533 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 1 2.2723 -2.3669 -0.0599 7 6 1.2205 -2.9429 1.7995 8 6 2.4061 -3.8799 2.0841 9 1 2.4247 -4.2632 3.1043 10 7 2.5791 -4.9300 1.0773 11 16 2.4343 -6.5224 1.5084 12 8 2.6860 -7.2354 0.3053 13 8 3.2904 -6.6598 2.6342 14 6 0.6984 -6.7014 2.0032 15 6 0.4360 -8.1472 2.4292 16 6 -1.0064 -8.2961 2.8397 17 1 -1.6695 -7.4446 2.8009 18 6 -1.4791 -9.5193 3.2657 19 7 -0.6715 -10.5561 3.3133 20 14 -3.2669 -9.7037 3.7751 21 1 -3.9596 -8.3980 3.6317 22 1 -3.9270 -10.7128 2.9084 23 1 -3.3349 -10.1467 5.1909 24 6 3.3194 -2.6619 1.8668 25 6 4.5993 -2.9856 1.0936 26 6 3.5824 -1.8559 3.1405 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.8331 -2.4464 2.6892 35 1 0.4370 -3.3992 1.1945 36 1 2.7783 -4.6926 0.1581 37 1 0.4877 -6.0330 2.8380 38 1 0.0528 -6.4472 1.1624 39 1 0.6467 -8.8159 1.5946 40 1 1.0815 -8.4011 3.2700 41 1 -1.0043 -11.4167 3.6127 42 1 5.1678 -2.0697 0.9323 43 1 4.3405 -3.4269 0.1311 44 1 5.2014 -3.6908 1.6666 45 1 4.2106 -0.9971 2.9037 46 1 2.6350 -1.5101 3.5538 47 1 4.0892 -2.4862 3.8712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361823478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:20 Heat of formation + Delta-G solvation = -144.388964 kcal Electronic energy + Delta-G solvation = -26108.969879 eV Core-core repulsion = 22418.088362 eV Total energy + Delta-G solvation = -3690.881517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40089 -38.34705 -38.09566 -37.01609 -35.89016 -34.27191 -33.12608 -32.91977 -31.15678 -28.25466 -28.00152 -27.57515 -25.25150 -23.69751 -23.31181 -22.17035 -20.42304 -19.90909 -19.13618 -18.28470 -17.59359 -17.07894 -16.99355 -16.52277 -16.28703 -16.19405 -15.89285 -15.16313 -14.92442 -14.66881 -14.49890 -14.33501 -14.10535 -13.72223 -13.44663 -13.30677 -13.20784 -13.12061 -13.05730 -12.99214 -12.95083 -12.93749 -12.86972 -12.76810 -12.58532 -12.33418 -12.24953 -12.10391 -11.96087 -11.77323 -11.65802 -11.49176 -11.15759 -11.03658 -10.65328 -10.25871 -10.19061 -8.25940 -6.39603 -0.68971 1.41239 1.41635 1.54958 1.80502 2.38118 2.78572 2.80863 3.07809 3.23976 3.39579 3.55781 3.81303 3.88420 4.00208 4.07297 4.12645 4.21696 4.24668 4.32472 4.35876 4.41977 4.65006 4.74491 4.76861 4.79804 4.84572 4.94286 4.98053 4.99012 5.01833 5.07405 5.13732 5.16236 5.24956 5.28393 5.29848 5.34864 5.38734 5.44400 5.56740 5.69164 6.06413 6.09737 6.48083 6.74534 7.30641 8.86611 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003327 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.225714 B = 8414.673623 C = 9516.607679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.372 6.372 5 C 0.078 3.922 6 H 0.097 0.903 7 C -0.169 4.169 8 C 0.119 3.881 9 H 0.106 0.894 10 N -1.087 6.087 11 S 2.621 3.379 12 O -0.998 6.998 13 O -0.995 6.995 14 C -0.586 4.586 15 C 0.020 3.980 16 C -0.536 4.536 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.255 1.255 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.083 4.083 25 C -0.138 4.138 26 C -0.117 4.117 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.424 0.576 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 25.220 -6.783 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.291 6.291 5 C 0.020 3.980 6 H 0.115 0.885 7 C -0.208 4.208 8 C 0.011 3.989 9 H 0.124 0.876 10 N -0.846 5.846 11 S 2.717 3.283 12 O -0.988 6.988 13 O -0.985 6.985 14 C -0.718 4.718 15 C -0.019 4.019 16 C -0.575 4.575 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.179 1.179 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.085 4.085 25 C -0.196 4.196 26 C -0.174 4.174 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.261 0.739 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.625 24.459 -6.430 25.908 hybrid contribution -1.242 -0.569 -0.173 1.377 sum 4.383 23.890 -6.603 25.170 Atomic orbital electron populations 1.22308 0.95757 1.02273 1.02720 1.22332 0.93953 0.94298 0.87942 1.21859 1.01548 0.94123 1.02883 1.87963 1.85662 1.19551 1.35964 1.23891 0.94950 0.80687 0.98477 0.88524 1.24039 0.97292 0.97004 1.02491 1.21789 0.97815 0.87568 0.91773 0.87597 1.55091 1.87789 1.22517 1.19192 1.04467 0.77938 0.72700 0.73148 1.93507 1.85698 1.72102 1.47509 1.93509 1.64313 1.85455 1.55178 1.30351 1.22236 1.06559 1.12696 1.18828 0.98647 0.88606 0.95845 1.21550 0.95343 0.96288 1.44362 0.90549 1.26116 1.03190 0.95545 0.95437 1.70109 1.37774 1.01570 1.48001 0.85273 0.78413 0.78824 0.77795 1.17857 1.20435 1.20429 1.22513 0.94665 0.93797 0.97537 1.21713 0.96305 1.01759 0.99799 1.21393 1.02393 0.99096 0.94547 0.92864 0.92441 0.90682 0.91641 0.92290 0.89978 0.92378 0.87655 0.89666 0.73921 0.83995 0.83837 0.97584 0.97499 0.92420 0.91277 0.91988 0.92953 0.91441 0.91711 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.53 71.98 0.69 -1.54 16 2 C 0.07 0.97 3.33 30.59 0.10 1.07 16 3 C -0.15 -1.65 9.56 71.98 0.69 -0.96 16 4 O -0.37 -6.38 9.12 -148.98 -1.36 -7.74 16 5 C 0.08 1.28 3.50 31.12 0.11 1.39 16 6 H 0.10 1.37 7.28 -2.39 -0.02 1.35 16 7 C -0.17 -2.98 7.36 31.12 0.23 -2.75 16 8 C 0.12 2.51 3.85 45.52 0.18 2.69 16 9 H 0.11 2.41 7.73 -2.39 -0.02 2.39 16 10 N -1.09 -25.58 4.96 -167.20 -0.83 -26.40 16 11 S 2.62 91.12 5.43 -56.49 -0.31 90.81 16 12 O -1.00 -40.88 18.08 -127.65 -2.31 -43.19 16 13 O -0.99 -41.05 17.58 -127.65 -2.24 -43.30 16 14 C -0.59 -21.58 6.01 71.98 0.43 -21.15 16 15 C 0.02 1.02 4.98 29.85 0.15 1.17 16 16 C -0.54 -29.50 9.11 25.60 0.23 -29.26 16 17 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 18 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 19 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 20 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.08 -1.51 1.34 -51.66 -0.07 -1.58 16 25 C -0.14 -2.46 8.64 71.98 0.62 -1.84 16 26 C -0.12 -2.04 8.44 71.98 0.61 -1.43 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.73 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.78 7.42 -2.39 -0.02 0.76 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 1.80 7.64 -2.39 -0.02 1.78 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 8.01 7.53 -96.74 -0.73 7.29 16 37 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 38 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 39 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.99 6.76 -2.39 -0.02 0.98 16 44 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.06 1.12 7.22 -2.39 -0.02 1.10 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -74.29 390.19 -0.11 -74.39 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.20 Total: 20.84 kcal Atomic # 6 Polarization: -58.42 SS G_CDS: 4.43 Total: -53.99 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -0.54 Total: -82.97 kcal Atomic # 8 Polarization: -88.32 SS G_CDS: -5.91 Total: -94.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 91.12 SS G_CDS: -0.31 Total: 90.81 kcal Total: -74.29 -0.11 -74.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361823478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.995 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds