Wall clock time and date at job start Tue Mar 31 2020 13:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99613 * 2 1 4 4 C 1.52997 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47260 * 64.18707 * 4 3 2 6 6 C 1.46503 * 119.99976 * 73.33333 * 5 4 3 7 7 H 1.08992 * 110.01609 * 6.91780 * 6 5 4 8 8 C 1.53871 * 110.03362 * 245.52201 * 6 5 4 9 9 C 1.54268 * 106.60251 * 240.66661 * 8 6 5 10 10 C 1.54887 * 104.30986 * 336.32929 * 9 8 6 11 11 C 1.54272 * 110.06892 * 128.33481 * 6 5 4 12 12 H 1.08996 * 110.48471 * 24.24091 * 11 6 5 13 13 C 1.53002 * 110.48545 * 261.72565 * 11 6 5 14 14 S 1.65605 * 120.00081 * 253.34223 * 5 4 3 15 15 O 1.42101 * 104.27680 * 31.72757 * 14 5 4 16 16 O 1.42098 * 104.27975 * 159.58831 * 14 5 4 17 17 C 1.81403 * 104.44444 * 275.65849 * 14 5 4 18 18 C 1.53005 * 109.46685 * 174.42599 * 17 14 5 19 19 C 1.50703 * 109.46813 * 180.02562 * 18 17 14 20 20 H 1.07996 * 120.00391 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99935 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99876 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00159 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47017 * 59.99877 * 23 21 19 25 25 H 1.48500 * 109.47125 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47155 * 300.00078 * 23 21 19 27 27 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47548 * 299.99931 * 1 2 3 29 29 H 1.09000 * 109.47127 * 60.00259 * 1 2 3 30 30 H 1.09006 * 109.47434 * 59.99909 * 3 2 1 31 31 H 1.09001 * 109.47060 * 299.99563 * 3 2 1 32 32 H 1.09001 * 109.47640 * 304.18877 * 4 3 2 33 33 H 1.08998 * 109.47437 * 184.18161 * 4 3 2 34 34 H 1.09003 * 110.03128 * 121.38440 * 8 6 5 35 35 H 1.09001 * 110.07422 * 359.97438 * 8 6 5 36 36 H 1.09004 * 110.48003 * 95.06589 * 9 8 6 37 37 H 1.08997 * 110.48680 * 217.57886 * 9 8 6 38 38 H 1.09003 * 110.75312 * 156.32301 * 10 9 8 39 39 H 1.09003 * 110.75505 * 279.68533 * 10 9 8 40 40 H 1.09004 * 109.46687 * 60.00196 * 13 11 6 41 41 H 1.09000 * 109.47101 * 180.02562 * 13 11 6 42 42 H 1.09002 * 109.47030 * 300.00279 * 13 11 6 43 43 H 1.08996 * 109.47281 * 294.42387 * 17 14 5 44 44 H 1.08997 * 109.47293 * 54.42588 * 17 14 5 45 45 H 1.08996 * 109.47088 * 299.99906 * 18 17 14 46 46 H 1.08997 * 109.47263 * 59.99971 * 18 17 14 47 47 H 0.96998 * 119.99719 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9752 0.5464 -1.2425 6 6 3.9356 1.2923 -2.5028 7 1 3.6721 2.3327 -2.3124 8 6 2.9126 0.6560 -3.4599 9 6 3.6968 0.2139 -4.7127 10 6 4.9543 1.1182 -4.7161 11 6 5.3059 1.2146 -3.2072 12 1 5.8505 0.3271 -2.8852 13 6 6.1252 2.4757 -2.9254 14 16 4.5171 -1.0183 -1.2231 15 8 3.7721 -1.6343 -0.1814 16 8 4.3880 -1.4507 -2.5705 17 6 6.2665 -0.8858 -0.7620 18 6 6.8518 -2.2869 -0.5737 19 6 8.3050 -2.1767 -0.1900 20 1 8.7652 -1.2048 -0.0908 21 6 9.0473 -3.3169 0.0334 22 7 8.4871 -4.5006 -0.0879 23 14 10.8488 -3.1805 0.5083 24 1 10.9698 -2.4193 1.7775 25 1 11.4168 -4.5403 0.6911 26 1 11.5917 -2.4735 -0.5657 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8517 0.5806 0.8509 33 1 3.9785 2.1778 0.0756 34 1 2.1526 1.3876 -3.7342 35 1 2.4455 -0.2082 -2.9876 36 1 3.9817 -0.8353 -4.6338 37 1 3.1044 0.3808 -5.6123 38 1 5.7649 0.6506 -5.2751 39 1 4.7212 2.1025 -5.1224 40 1 6.2841 2.5732 -1.8514 41 1 7.0884 2.4037 -3.4305 42 1 5.5865 3.3488 -3.2938 43 1 6.8118 -0.3672 -1.5504 44 1 6.3554 -0.3267 0.1695 45 1 6.3065 -2.8055 0.2148 46 1 6.7629 -2.8459 -1.5051 47 1 9.0092 -5.3027 0.0696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362881770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:29 Heat of formation + Delta-G solvation = -129.062767 kcal Electronic energy + Delta-G solvation = -27442.954141 eV Core-core repulsion = 23752.737217 eV Total energy + Delta-G solvation = -3690.216923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.16461 -37.80419 -36.28283 -35.16299 -34.58629 -33.84554 -31.39245 -30.90145 -29.73977 -27.27333 -26.13088 -25.51085 -24.68020 -22.36520 -21.64654 -20.51042 -20.20184 -18.18595 -17.05093 -16.85421 -16.41750 -16.13026 -15.63347 -15.23432 -14.95614 -14.72179 -14.57343 -14.43878 -14.12733 -13.52865 -13.26204 -13.16165 -12.90282 -12.71777 -12.44033 -12.14361 -11.95715 -11.68247 -11.52793 -11.35552 -11.30993 -11.27242 -11.13970 -11.03184 -10.91447 -10.90467 -10.75163 -10.60853 -10.44338 -10.31482 -10.17694 -10.12013 -9.66916 -9.60399 -9.23211 -8.63489 -8.46202 -6.08346 -4.13759 0.93195 3.14644 3.29173 3.33886 3.35762 3.85195 4.37451 4.48189 4.53073 4.66651 4.78176 4.83785 5.03295 5.10543 5.14110 5.26490 5.30033 5.33180 5.34108 5.37253 5.47655 5.49298 5.56812 5.62504 5.66771 5.72137 5.73682 5.82106 5.82462 5.87607 5.95443 6.06202 6.19518 6.23718 6.29868 6.33901 6.45519 6.59697 6.77364 6.94763 7.26025 7.35635 7.42739 7.84502 8.22709 8.89397 9.50595 11.02701 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.004640 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.665860 B = 6033.277002 C = 7004.209247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.044 3.956 4 C 0.125 3.875 5 N -0.995 5.995 6 C 0.163 3.837 7 H 0.087 0.913 8 C -0.130 4.130 9 C -0.123 4.123 10 C -0.112 4.112 11 C -0.122 4.122 12 H 0.079 0.921 13 C -0.143 4.143 14 S 2.589 3.411 15 O -0.948 6.948 16 O -0.957 6.957 17 C -0.601 4.601 18 C 0.031 3.969 19 C -0.519 4.519 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.581 16.642 -4.474 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.034 4.034 4 C -0.001 4.001 5 N -0.829 5.829 6 C 0.056 3.944 7 H 0.105 0.895 8 C -0.169 4.169 9 C -0.161 4.161 10 C -0.150 4.150 11 C -0.142 4.142 12 H 0.097 0.903 13 C -0.201 4.201 14 S 2.687 3.313 15 O -0.938 6.938 16 O -0.948 6.948 17 C -0.733 4.733 18 C -0.008 4.008 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.008 15.547 -4.635 20.794 hybrid contribution 1.286 0.731 0.537 1.573 sum -11.722 16.278 -4.098 20.473 Atomic orbital electron populations 1.22720 0.82019 1.02689 0.99193 1.88175 1.18634 1.26404 1.95136 1.22968 0.94758 0.85817 0.99889 1.21291 0.92536 0.99491 0.86820 1.57935 1.79424 1.33385 1.12190 1.21464 0.94671 0.95834 0.82403 0.89462 1.22532 0.97417 1.00449 0.96514 1.22374 0.95521 1.02109 0.96060 1.22488 0.98404 0.99432 0.94632 1.22641 0.95547 0.99267 0.96709 0.90255 1.21808 0.99937 0.96562 1.01772 1.05880 0.78073 0.72562 0.74812 1.93579 1.68469 1.72947 1.58778 1.93514 1.86587 1.79485 1.35191 1.30719 1.21636 1.10427 1.10553 1.18913 0.97572 0.85797 0.98510 1.20973 0.94138 0.92804 1.47956 0.92195 1.25060 0.98825 0.95285 0.95255 1.69950 1.36761 0.97520 1.48656 0.86556 0.84518 0.77274 0.79082 1.20101 1.21063 1.20089 0.89736 0.94512 0.94625 0.92911 0.93266 0.88849 0.89589 0.92440 0.90765 0.88722 0.92722 0.91279 0.91839 0.92418 0.92258 0.92649 0.86372 0.86700 0.94863 0.95168 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.42 9.79 -41.26 -0.40 -5.83 16 3 C 0.04 0.50 6.17 37.16 0.23 0.73 16 4 C 0.12 1.47 5.78 -4.04 -0.02 1.44 16 5 N -1.00 -14.09 2.54 -106.12 -0.27 -14.36 16 6 C 0.16 2.00 2.61 -66.81 -0.17 1.82 16 7 H 0.09 0.84 7.66 -51.93 -0.40 0.44 16 8 C -0.13 -1.70 5.70 -25.61 -0.15 -1.84 16 9 C -0.12 -1.62 6.29 -25.07 -0.16 -1.78 16 10 C -0.11 -1.32 6.36 -24.55 -0.16 -1.48 16 11 C -0.12 -1.55 2.67 -88.77 -0.24 -1.79 16 12 H 0.08 1.21 3.91 -51.93 -0.20 1.00 16 13 C -0.14 -1.48 9.13 37.16 0.34 -1.14 16 14 S 2.59 49.28 4.38 -107.50 -0.47 48.81 16 15 O -0.95 -21.04 16.14 -61.69 -1.00 -22.04 16 16 O -0.96 -19.47 12.11 -57.54 -0.70 -20.16 16 17 C -0.60 -12.10 5.84 37.16 0.22 -11.88 16 18 C 0.03 0.82 4.98 -27.88 -0.14 0.68 16 19 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 23 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 32 H 0.09 1.20 7.39 -51.93 -0.38 0.82 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.16 6.94 -51.93 -0.36 0.80 16 36 H 0.09 1.53 6.46 -51.93 -0.34 1.19 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 43 H 0.12 2.19 6.30 -51.93 -0.33 1.86 16 44 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 45 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -34.70 374.88 -9.32 -44.02 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.30 Total: 0.80 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 0.45 Total: -27.15 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.47 Total: -40.49 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -2.10 Total: -48.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.47 Total: 48.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.70 -9.32 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362881770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.046 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds