Wall clock time and date at job start Tue Mar 31 2020 13:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99590 * 2 1 4 4 C 1.52998 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47379 * 70.51431 * 4 3 2 6 6 C 1.46498 * 119.99671 * 100.87552 * 5 4 3 7 7 H 1.08996 * 110.01506 * 186.73294 * 6 5 4 8 8 C 1.53874 * 110.03368 * 308.13116 * 6 5 4 9 9 C 1.54366 * 106.54755 * 119.27087 * 8 6 5 10 10 C 1.54890 * 104.21764 * 336.42525 * 9 8 6 11 11 C 1.54268 * 110.03331 * 65.34851 * 6 5 4 12 12 H 1.08996 * 110.48891 * 145.64746 * 11 6 5 13 13 C 1.53006 * 110.48771 * 23.13001 * 11 6 5 14 14 S 1.65594 * 120.00218 * 280.87665 * 5 4 3 15 15 O 1.42097 * 104.28005 * 206.06906 * 14 5 4 16 16 O 1.42104 * 104.27830 * 333.92972 * 14 5 4 17 17 C 1.81405 * 104.45013 * 89.99663 * 14 5 4 18 18 C 1.53000 * 109.47284 * 179.97438 * 17 14 5 19 19 C 1.50702 * 109.47066 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99736 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99958 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99909 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47391 * 89.99706 * 23 21 19 25 25 H 1.48499 * 109.47154 * 209.99948 * 23 21 19 26 26 H 1.48503 * 109.47130 * 329.99764 * 23 21 19 27 27 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47064 * 299.99911 * 1 2 3 29 29 H 1.08995 * 109.46932 * 60.00237 * 1 2 3 30 30 H 1.08997 * 109.47197 * 60.00336 * 3 2 1 31 31 H 1.09001 * 109.47413 * 299.99923 * 3 2 1 32 32 H 1.08996 * 109.47326 * 190.51980 * 4 3 2 33 33 H 1.09009 * 109.46751 * 310.51761 * 4 3 2 34 34 H 1.09002 * 110.03105 * 238.57033 * 8 6 5 35 35 H 1.09002 * 110.03008 * 359.97438 * 8 6 5 36 36 H 1.08999 * 110.49575 * 217.72891 * 9 8 6 37 37 H 1.09008 * 110.57297 * 95.15566 * 9 8 6 38 38 H 1.09003 * 110.75146 * 279.61191 * 10 9 8 39 39 H 1.08998 * 110.91562 * 156.31067 * 10 9 8 40 40 H 1.08997 * 109.46304 * 53.55528 * 13 11 6 41 41 H 1.08999 * 109.47061 * 173.55680 * 13 11 6 42 42 H 1.09001 * 109.47157 * 293.55787 * 13 11 6 43 43 H 1.09000 * 109.47264 * 300.00651 * 17 14 5 44 44 H 1.09007 * 109.46783 * 59.99857 * 17 14 5 45 45 H 1.08998 * 109.47151 * 300.00634 * 18 17 14 46 46 H 1.09004 * 109.46675 * 60.00234 * 18 17 14 47 47 H 0.97006 * 119.99719 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9854 0.6872 -1.3030 6 6 4.5300 1.6182 -2.2944 7 1 4.7010 1.1003 -3.2381 8 6 3.5574 2.7917 -2.5057 9 6 4.3217 4.0730 -2.1096 10 6 5.4260 3.5743 -1.1447 11 6 5.8506 2.2264 -1.7788 12 1 6.5415 2.3943 -2.6049 13 6 6.4862 1.3138 -0.7279 14 16 3.8785 -0.9275 -1.6545 15 8 4.8961 -1.1436 -2.6225 16 8 3.9264 -1.5662 -0.3860 17 6 2.2371 -1.1202 -2.4025 18 6 2.0160 -2.5872 -2.7763 19 6 0.6522 -2.7474 -3.3972 20 1 0.0078 -1.8886 -3.5138 21 6 0.2271 -3.9902 -3.8162 22 7 -0.9629 -4.1299 -4.3584 23 14 1.3414 -5.4757 -3.6137 24 1 1.0881 -6.1084 -2.2943 25 1 1.0618 -6.4552 -4.6942 26 1 2.7603 -5.0445 -3.6915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.9774 2.1633 0.1870 33 1 3.8452 0.4904 0.7804 34 1 3.2568 2.8438 -3.5522 35 1 2.6799 2.6682 -1.8709 36 1 3.6575 4.7717 -1.6008 37 1 4.7657 4.5412 -2.9882 38 1 5.0234 3.4204 -0.1435 39 1 6.2643 4.2705 -1.1197 40 1 6.5888 0.3078 -1.1348 41 1 7.4697 1.6992 -0.4591 42 1 5.8527 1.2844 0.1586 43 1 1.4740 -0.8074 -1.6898 44 1 2.1717 -0.5033 -3.2989 45 1 2.7792 -2.8996 -3.4891 46 1 2.0816 -3.2043 -1.8802 47 1 -1.2621 -5.0044 -4.6529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362881771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:31 Heat of formation + Delta-G solvation = -118.040550 kcal Electronic energy + Delta-G solvation = -27824.099887 eV Core-core repulsion = 24134.360923 eV Total energy + Delta-G solvation = -3689.738964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.72574 -37.86512 -36.46998 -35.36034 -34.30719 -33.76891 -31.46526 -31.29935 -30.06536 -27.39206 -26.13113 -25.78867 -24.90380 -22.64705 -21.12429 -20.69636 -19.93621 -18.41957 -17.70399 -16.98997 -16.55106 -16.17114 -15.88365 -15.43865 -15.25283 -14.89790 -14.72855 -14.22751 -14.21103 -13.60717 -13.34294 -13.12116 -12.82348 -12.69904 -12.66684 -12.34713 -11.97926 -11.77074 -11.73732 -11.51606 -11.46505 -11.39123 -11.21860 -11.11711 -11.04704 -10.99243 -10.86090 -10.68988 -10.60272 -10.48865 -10.31004 -10.05228 -9.62922 -9.46359 -9.27450 -8.72358 -8.59915 -6.11156 -4.10641 0.88993 3.04524 3.30934 3.37829 3.43808 3.77693 4.34611 4.37760 4.41709 4.50031 4.60168 4.73485 4.85889 5.03408 5.08234 5.17886 5.21648 5.22236 5.33436 5.36412 5.44803 5.46038 5.48955 5.52207 5.56484 5.63650 5.69950 5.73795 5.82307 5.86878 5.89870 5.97019 6.00420 6.05027 6.13264 6.18938 6.31756 6.37659 6.54786 6.79819 7.00391 7.10318 7.19058 7.63474 8.44301 8.90404 9.50011 11.01347 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.004745 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.552911 B = 5899.982493 C = 6378.929192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.383 6.383 3 C 0.023 3.977 4 C 0.117 3.883 5 N -0.991 5.991 6 C 0.148 3.852 7 H 0.100 0.900 8 C -0.146 4.146 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.102 4.102 12 H 0.082 0.918 13 C -0.146 4.146 14 S 2.588 3.412 15 O -0.974 6.974 16 O -0.957 6.957 17 C -0.593 4.593 18 C -0.004 4.004 19 C -0.511 4.511 20 H 0.076 0.924 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.867 3.133 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.262 1.262 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.152 0.848 44 H 0.114 0.886 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 18.421 8.483 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C -0.055 4.055 4 C -0.009 4.009 5 N -0.826 5.826 6 C 0.041 3.959 7 H 0.118 0.882 8 C -0.185 4.185 9 C -0.160 4.160 10 C -0.160 4.160 11 C -0.122 4.122 12 H 0.100 0.900 13 C -0.203 4.203 14 S 2.688 3.312 15 O -0.965 6.965 16 O -0.948 6.948 17 C -0.726 4.726 18 C -0.043 4.043 19 C -0.550 4.550 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.693 3.307 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.169 0.831 44 H 0.132 0.868 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.933 17.487 8.601 21.873 hybrid contribution -0.466 -0.273 -0.266 0.602 sum 9.467 17.214 8.335 21.341 Atomic orbital electron populations 1.22824 0.80105 1.04115 0.99699 1.87962 1.20700 1.26965 1.94622 1.23431 0.94921 0.86083 1.01075 1.21498 0.91475 1.02352 0.85562 1.57740 1.76823 1.26181 1.21819 1.21533 0.92334 0.90567 0.91459 0.88166 1.22789 0.99087 0.94074 1.02502 1.22337 0.97383 0.96990 0.99271 1.22700 0.98193 0.96395 0.98714 1.22275 0.96377 0.94890 0.98697 0.89991 1.21820 0.99823 0.99775 0.98892 1.05662 0.78284 0.72359 0.74902 1.93519 1.55590 1.83706 1.63646 1.93515 1.87644 1.72996 1.40604 1.30598 1.21187 1.08249 1.12584 1.19352 1.00127 0.87630 0.97192 1.20838 0.98519 0.95800 1.39813 0.90559 1.24966 0.94944 0.98787 0.94404 1.69887 1.18404 1.24170 1.41274 0.86957 0.82178 0.83055 0.78473 1.19689 1.20855 1.18676 0.88493 0.94211 0.93616 0.92209 0.92017 0.88001 0.88661 0.90942 0.90075 0.91754 0.91548 0.91232 0.91649 0.92383 0.93042 0.92032 0.83065 0.86756 0.95589 0.95620 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.11 101.05 1.02 1.39 16 2 O -0.38 -5.66 6.84 -35.23 -0.24 -5.90 16 3 C 0.02 0.25 6.03 37.16 0.22 0.47 16 4 C 0.12 1.31 3.45 -4.04 -0.01 1.30 16 5 N -0.99 -13.44 1.65 -106.11 -0.17 -13.61 16 6 C 0.15 1.72 3.08 -66.81 -0.21 1.52 16 7 H 0.10 1.30 7.06 -51.93 -0.37 0.93 16 8 C -0.15 -1.34 6.19 -25.56 -0.16 -1.50 16 9 C -0.12 -0.90 6.83 -25.02 -0.17 -1.07 16 10 C -0.12 -0.94 5.83 -24.74 -0.14 -1.08 16 11 C -0.10 -1.03 3.25 -88.95 -0.29 -1.32 16 12 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.15 -1.64 8.34 37.16 0.31 -1.33 16 14 S 2.59 48.61 4.77 -107.50 -0.51 48.10 16 15 O -0.97 -20.36 16.51 -57.54 -0.95 -21.31 16 16 O -0.96 -20.20 16.46 -58.04 -0.96 -21.15 16 17 C -0.59 -11.91 5.87 37.16 0.22 -11.69 16 18 C 0.00 -0.09 4.05 -27.88 -0.11 -0.20 16 19 C -0.51 -14.46 9.66 -34.44 -0.33 -14.79 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 23 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 27 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.61 5.66 -51.93 -0.29 0.32 16 32 H 0.10 0.85 4.35 -51.93 -0.23 0.62 16 33 H 0.10 1.20 7.18 -51.92 -0.37 0.83 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.73 4.54 -51.93 -0.24 0.49 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.50 5.70 -51.93 -0.30 0.20 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.81 7.97 -51.93 -0.41 0.39 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.66 5.53 -51.93 -0.29 0.37 16 43 H 0.15 2.88 3.98 -51.92 -0.21 2.67 16 44 H 0.11 2.10 8.14 -51.92 -0.42 1.68 16 45 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 46 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -34.33 359.17 -8.77 -43.10 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.70 Total: 0.90 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 0.25 Total: -26.33 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.60 Total: -40.15 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -2.15 Total: -48.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 16 Polarization: 48.61 SS G_CDS: -0.51 Total: 48.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.33 -8.77 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362881771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.940 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds