Wall clock time and date at job start Tue Mar 31 2020 13:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99590 * 2 1 4 4 C 1.52998 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47379 * 70.51431 * 4 3 2 6 6 C 1.46498 * 119.99671 * 100.87552 * 5 4 3 7 7 H 1.08996 * 110.01506 * 186.73294 * 6 5 4 8 8 C 1.53874 * 110.03368 * 308.13116 * 6 5 4 9 9 C 1.54366 * 106.54755 * 119.27087 * 8 6 5 10 10 C 1.54890 * 104.21764 * 336.42525 * 9 8 6 11 11 C 1.54268 * 110.03331 * 65.34851 * 6 5 4 12 12 H 1.08996 * 110.48891 * 145.64746 * 11 6 5 13 13 C 1.53006 * 110.48771 * 23.13001 * 11 6 5 14 14 S 1.65594 * 120.00218 * 280.87665 * 5 4 3 15 15 O 1.42097 * 104.28005 * 206.06906 * 14 5 4 16 16 O 1.42104 * 104.27830 * 333.92972 * 14 5 4 17 17 C 1.81405 * 104.45013 * 89.99663 * 14 5 4 18 18 C 1.53000 * 109.47284 * 179.97438 * 17 14 5 19 19 C 1.50702 * 109.47066 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99736 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99958 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99909 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47391 * 89.99706 * 23 21 19 25 25 H 1.48499 * 109.47154 * 209.99948 * 23 21 19 26 26 H 1.48503 * 109.47130 * 329.99764 * 23 21 19 27 27 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47064 * 299.99911 * 1 2 3 29 29 H 1.08995 * 109.46932 * 60.00237 * 1 2 3 30 30 H 1.08997 * 109.47197 * 60.00336 * 3 2 1 31 31 H 1.09001 * 109.47413 * 299.99923 * 3 2 1 32 32 H 1.08996 * 109.47326 * 190.51980 * 4 3 2 33 33 H 1.09009 * 109.46751 * 310.51761 * 4 3 2 34 34 H 1.09002 * 110.03105 * 238.57033 * 8 6 5 35 35 H 1.09002 * 110.03008 * 359.97438 * 8 6 5 36 36 H 1.08999 * 110.49575 * 217.72891 * 9 8 6 37 37 H 1.09008 * 110.57297 * 95.15566 * 9 8 6 38 38 H 1.09003 * 110.75146 * 279.61191 * 10 9 8 39 39 H 1.08998 * 110.91562 * 156.31067 * 10 9 8 40 40 H 1.08997 * 109.46304 * 53.55528 * 13 11 6 41 41 H 1.08999 * 109.47061 * 173.55680 * 13 11 6 42 42 H 1.09001 * 109.47157 * 293.55787 * 13 11 6 43 43 H 1.09000 * 109.47264 * 300.00651 * 17 14 5 44 44 H 1.09007 * 109.46783 * 59.99857 * 17 14 5 45 45 H 1.08998 * 109.47151 * 300.00634 * 18 17 14 46 46 H 1.09004 * 109.46675 * 60.00234 * 18 17 14 47 47 H 0.97006 * 119.99719 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9854 0.6872 -1.3030 6 6 4.5300 1.6182 -2.2944 7 1 4.7010 1.1003 -3.2381 8 6 3.5574 2.7917 -2.5057 9 6 4.3217 4.0730 -2.1096 10 6 5.4260 3.5743 -1.1447 11 6 5.8506 2.2264 -1.7788 12 1 6.5415 2.3943 -2.6049 13 6 6.4862 1.3138 -0.7279 14 16 3.8785 -0.9275 -1.6545 15 8 4.8961 -1.1436 -2.6225 16 8 3.9264 -1.5662 -0.3860 17 6 2.2371 -1.1202 -2.4025 18 6 2.0160 -2.5872 -2.7763 19 6 0.6522 -2.7474 -3.3972 20 1 0.0078 -1.8886 -3.5138 21 6 0.2271 -3.9902 -3.8162 22 7 -0.9629 -4.1299 -4.3584 23 14 1.3414 -5.4757 -3.6137 24 1 1.0881 -6.1084 -2.2943 25 1 1.0618 -6.4552 -4.6942 26 1 2.7603 -5.0445 -3.6915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.9774 2.1633 0.1870 33 1 3.8452 0.4904 0.7804 34 1 3.2568 2.8438 -3.5522 35 1 2.6799 2.6682 -1.8709 36 1 3.6575 4.7717 -1.6008 37 1 4.7657 4.5412 -2.9882 38 1 5.0234 3.4204 -0.1435 39 1 6.2643 4.2705 -1.1197 40 1 6.5888 0.3078 -1.1348 41 1 7.4697 1.6992 -0.4591 42 1 5.8527 1.2844 0.1586 43 1 1.4740 -0.8074 -1.6898 44 1 2.1717 -0.5033 -3.2989 45 1 2.7792 -2.8996 -3.4891 46 1 2.0816 -3.2043 -1.8802 47 1 -1.2621 -5.0044 -4.6529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362881771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:31 Heat of formation + Delta-G solvation = -141.773837 kcal Electronic energy + Delta-G solvation = -27825.129039 eV Core-core repulsion = 24134.360923 eV Total energy + Delta-G solvation = -3690.768117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58715 -38.89110 -38.01309 -36.95492 -35.86780 -35.20609 -33.42247 -32.18541 -30.97675 -28.24493 -27.80393 -27.09315 -25.71046 -23.71145 -22.94204 -21.36772 -20.97275 -19.73918 -19.30576 -18.63763 -17.62847 -17.27998 -17.19280 -16.60788 -16.44958 -16.28417 -16.12031 -15.66087 -15.25369 -14.83485 -14.77105 -14.51101 -14.09643 -13.82342 -13.74306 -13.55310 -13.27132 -13.12471 -13.06398 -12.98054 -12.94803 -12.87799 -12.58711 -12.33252 -12.18007 -12.09251 -11.94584 -11.83952 -11.69416 -11.64898 -11.51907 -11.39070 -11.21235 -11.16030 -10.84298 -10.42782 -9.85888 -8.36635 -6.40533 -0.61221 1.28870 1.30696 1.41287 1.74998 2.28643 2.77561 2.94562 2.97469 3.26351 3.52568 3.73131 3.86126 4.00047 4.06113 4.16333 4.21137 4.26343 4.37424 4.45061 4.50180 4.57135 4.59660 4.61256 4.63461 4.68485 4.70071 4.79717 4.92545 4.97047 4.99524 5.03161 5.07570 5.10854 5.23702 5.28745 5.34409 5.35347 5.41807 5.47575 5.50688 5.63137 5.81238 6.19053 6.25502 6.63426 7.23261 8.78765 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017722 B = 0.004745 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.552911 B = 5899.982493 C = 6378.929192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.016 3.984 4 C 0.112 3.888 5 N -0.978 5.978 6 C 0.136 3.864 7 H 0.080 0.920 8 C -0.144 4.144 9 C -0.115 4.115 10 C -0.115 4.115 11 C -0.103 4.103 12 H 0.085 0.915 13 C -0.149 4.149 14 S 2.608 3.392 15 O -1.000 7.000 16 O -0.983 6.983 17 C -0.601 4.601 18 C -0.009 4.009 19 C -0.517 4.517 20 H 0.052 0.948 21 C 0.019 3.981 22 N -0.937 5.937 23 Si 0.918 3.082 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.257 1.257 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.162 0.838 44 H 0.125 0.875 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 20.895 9.707 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.061 4.061 4 C -0.012 4.012 5 N -0.815 5.815 6 C 0.030 3.970 7 H 0.098 0.902 8 C -0.183 4.183 9 C -0.153 4.153 10 C -0.152 4.152 11 C -0.123 4.123 12 H 0.104 0.896 13 C -0.206 4.206 14 S 2.706 3.294 15 O -0.990 6.990 16 O -0.973 6.973 17 C -0.732 4.732 18 C -0.048 4.048 19 C -0.556 4.556 20 H 0.070 0.930 21 C -0.180 4.180 22 N -0.577 5.577 23 Si 0.741 3.259 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.181 1.181 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.179 0.821 44 H 0.143 0.857 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.985 19.956 9.818 24.805 hybrid contribution -0.788 -0.921 -0.637 1.370 sum 10.197 19.035 9.181 23.464 Atomic orbital electron populations 1.22834 0.79715 1.03070 1.01310 1.87897 1.21397 1.29512 1.94850 1.23678 0.94189 0.84950 1.03326 1.21807 0.92232 1.03630 0.83571 1.57341 1.76662 1.24353 1.23192 1.21824 0.94195 0.90763 0.90220 0.90195 1.22795 0.98824 0.93863 1.02831 1.22324 0.97250 0.96081 0.99621 1.22675 0.98861 0.94794 0.98889 1.22303 0.95304 0.95974 0.98711 0.89620 1.21855 1.01236 0.98252 0.99269 1.04767 0.77017 0.73815 0.73825 1.93481 1.55984 1.84989 1.64535 1.93474 1.87611 1.74847 1.41369 1.30641 1.23567 1.05225 1.13738 1.19277 0.97977 0.91036 0.96539 1.21077 0.99722 0.95132 1.39621 0.93022 1.25757 0.96271 1.01713 0.94242 1.69993 1.20034 1.25170 1.42513 0.86137 0.80537 0.79964 0.79292 1.18495 1.19491 1.18138 0.90981 0.91161 0.93408 0.88898 0.90750 0.84298 0.90022 0.90922 0.89508 0.89920 0.90987 0.90284 0.90080 0.95833 0.91289 0.91546 0.82077 0.85679 0.96133 0.96011 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.11 113.37 1.15 1.82 16 2 O -0.42 -11.91 6.84 -148.98 -1.02 -12.93 16 3 C 0.02 0.30 6.03 71.98 0.43 0.73 16 4 C 0.11 2.26 3.45 86.38 0.30 2.55 16 5 N -0.98 -25.45 1.65 -489.64 -0.81 -26.26 16 6 C 0.14 2.97 3.08 45.72 0.14 3.11 16 7 H 0.08 2.07 7.06 -2.39 -0.02 2.05 16 8 C -0.14 -2.26 6.19 31.35 0.19 -2.06 16 9 C -0.12 -1.22 6.83 31.70 0.22 -1.01 16 10 C -0.12 -1.29 5.83 31.89 0.19 -1.10 16 11 C -0.10 -1.83 3.25 -9.71 -0.03 -1.87 16 12 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 13 C -0.15 -3.13 8.34 71.98 0.60 -2.53 16 14 S 2.61 98.81 4.77 -56.49 -0.27 98.54 16 15 O -1.00 -42.64 16.51 -127.65 -2.11 -44.75 16 16 O -0.98 -41.93 16.46 -127.17 -2.09 -44.02 16 17 C -0.60 -24.52 5.87 71.98 0.42 -24.10 16 18 C -0.01 -0.47 4.05 29.85 0.12 -0.35 16 19 C -0.52 -30.09 9.66 25.60 0.25 -29.84 16 20 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 21 C 0.02 1.11 5.47 84.65 0.46 1.58 16 22 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 23 Si 0.92 45.48 27.47 68.60 1.88 47.36 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.24 5.66 -2.39 -0.01 1.23 16 32 H 0.14 1.76 4.35 -2.39 -0.01 1.75 16 33 H 0.08 1.93 7.18 -2.38 -0.02 1.91 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.26 4.54 -2.39 -0.01 1.25 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.74 5.70 -2.39 -0.01 0.73 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.02 0.64 7.97 -2.39 -0.02 0.62 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.29 5.53 -2.39 -0.01 1.28 16 43 H 0.16 6.24 3.98 -2.39 -0.01 6.24 16 44 H 0.12 4.70 8.14 -2.39 -0.02 4.68 16 45 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 46 H 0.02 1.11 7.57 -2.38 -0.02 1.09 16 47 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -76.28 359.17 1.22 -75.06 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.90 Total: 17.85 kcal Atomic # 6 Polarization: -57.50 SS G_CDS: 4.44 Total: -53.06 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -0.51 Total: -84.05 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -5.22 Total: -101.70 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Atomic # 16 Polarization: 98.81 SS G_CDS: -0.27 Total: 98.54 kcal Total: -76.28 1.22 -75.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362881771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.715 kcal (2) G-P(sol) polarization free energy of solvation -76.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds