Wall clock time and date at job start Tue Mar 31 2020 12:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47381 * 2 1 4 4 N 1.46503 * 109.47262 * 184.52871 * 3 2 1 5 5 C 1.37093 * 120.00283 * 94.39611 * 4 3 2 6 6 H 1.08003 * 119.99968 * 172.59757 * 5 4 3 7 7 C 1.38955 * 120.00130 * 352.59129 * 5 4 3 8 8 N 1.31410 * 119.99714 * 335.20216 * 7 5 4 9 9 Si 1.86800 * 119.99928 * 155.19879 * 7 5 4 10 10 H 1.48500 * 109.47186 * 94.99395 * 9 7 5 11 11 H 1.48499 * 109.46816 * 214.99525 * 9 7 5 12 12 H 1.48496 * 109.47260 * 334.99274 * 9 7 5 13 13 C 1.34785 * 119.99651 * 274.39881 * 4 3 2 14 14 O 1.21293 * 119.99556 * 184.98055 * 13 4 3 15 15 C 1.50698 * 119.99807 * 4.97405 * 13 4 3 16 16 H 1.08994 * 109.47182 * 20.57521 * 15 13 4 17 17 C 1.50698 * 109.46818 * 140.57705 * 15 13 4 18 18 O 1.20826 * 120.00321 * 0.02562 * 17 15 13 19 19 O 1.34232 * 120.00093 * 179.71890 * 17 15 13 20 20 C 1.45198 * 117.00033 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.46925 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.46911 * 260.57532 * 15 13 4 23 23 C 1.38239 * 120.00105 * 299.73853 * 22 15 13 24 24 C 1.38240 * 120.00008 * 179.81239 * 23 22 15 25 25 C 1.38228 * 119.99746 * 0.39730 * 24 23 22 26 26 C 1.38235 * 120.00226 * 359.85930 * 25 24 23 27 27 C 1.38230 * 119.99981 * 120.01899 * 22 15 13 28 28 H 1.09001 * 109.46786 * 300.00114 * 1 2 3 29 29 H 1.08996 * 109.47246 * 60.00072 * 1 2 3 30 30 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47122 * 239.99183 * 2 1 3 32 32 H 1.09011 * 109.46855 * 120.00008 * 2 1 3 33 33 H 1.08996 * 109.47753 * 64.52235 * 3 2 1 34 34 H 1.09001 * 109.47160 * 304.52251 * 3 2 1 35 35 H 0.96996 * 119.99887 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47542 * 300.00526 * 20 19 17 37 37 H 1.09004 * 109.46844 * 60.00904 * 20 19 17 38 38 H 1.08998 * 109.46969 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47232 * 300.00461 * 21 20 19 40 40 H 1.09000 * 109.46788 * 60.00129 * 21 20 19 41 41 H 1.08003 * 120.00078 * 0.02562 * 23 22 15 42 42 H 1.07996 * 119.99686 * 180.23115 * 24 23 22 43 43 H 1.08005 * 119.99846 * 179.83327 * 25 24 23 44 44 H 1.08008 * 120.00149 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00355 * 359.97148 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5010 1.4438 -0.1091 5 6 4.0966 1.5666 -1.3377 6 1 5.1674 1.6879 -1.4091 7 6 3.3226 1.5349 -2.4913 8 7 2.1584 0.9255 -2.4848 9 14 3.9371 2.3586 -4.0513 10 1 4.6187 1.3537 -4.9062 11 1 2.7873 2.9391 -4.7903 12 1 4.8937 3.4378 -3.6973 13 6 4.2595 1.3243 0.9987 14 8 5.4664 1.4160 0.9199 15 6 3.6081 1.0770 2.3349 16 1 2.6092 0.6685 2.1820 17 6 4.4367 0.0962 3.1238 18 8 5.4523 -0.3553 2.6498 19 8 4.0498 -0.2712 4.3555 20 6 4.8962 -1.2199 5.0567 21 6 4.2980 -1.5165 6.4334 22 6 3.5091 2.3754 3.0934 23 6 4.6556 3.0795 3.4111 24 6 4.5645 4.2725 4.1035 25 6 3.3276 4.7572 4.4855 26 6 2.1816 4.0505 4.1725 27 6 2.2723 2.8594 3.4767 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.7445 1.9324 0.9277 34 1 1.6121 1.9791 -0.8467 35 1 1.6179 0.9036 -3.2900 36 1 4.9602 -2.1439 4.4820 37 1 5.8937 -0.7970 5.1771 38 1 4.9337 -2.2283 6.9600 39 1 4.2337 -0.5927 7.0083 40 1 3.3007 -1.9395 6.3126 41 1 5.6222 2.6993 3.1153 42 1 5.4599 4.8244 4.3484 43 1 3.2567 5.6879 5.0288 44 1 1.2151 4.4290 4.4713 45 1 1.3769 2.3074 3.2321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416133416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:23 Heat of formation + Delta-G solvation = -84.149394 kcal Electronic energy + Delta-G solvation = -28269.361699 eV Core-core repulsion = 24445.648415 eV Total energy + Delta-G solvation = -3823.713285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.56839 -39.02532 -38.17162 -36.24703 -35.20938 -33.15209 -32.17112 -31.47480 -31.25548 -30.66603 -28.05346 -25.84880 -24.52579 -23.33934 -22.41196 -21.79645 -21.22899 -20.65037 -18.84191 -17.56517 -16.98697 -16.70486 -16.29339 -15.89669 -15.72568 -15.04212 -14.72819 -14.23904 -13.98641 -13.90485 -13.70719 -13.58266 -13.17949 -13.16031 -12.74825 -12.64594 -12.45203 -12.30127 -12.00696 -11.72305 -11.69230 -11.49508 -11.36078 -11.06502 -10.99263 -10.87227 -10.69634 -10.38871 -10.36073 -10.32055 -10.14710 -9.93556 -9.70504 -8.86799 -8.82184 -8.67892 -8.16579 -7.75239 -6.36416 -3.76773 1.49174 1.63247 2.65045 2.81050 3.16424 3.26604 3.34343 3.82923 3.99214 4.15319 4.76579 4.90053 4.96158 4.96477 5.07265 5.07880 5.15637 5.25665 5.31439 5.34389 5.49823 5.53906 5.68630 5.76988 5.78609 5.84271 5.91979 5.94434 6.00488 6.13932 6.23414 6.27649 6.32730 6.57019 6.63801 6.70588 6.72640 6.77814 6.82777 6.86996 7.19500 7.27046 7.47469 7.71250 8.05365 8.20064 8.49391 9.16687 9.40113 9.95159 10.63040 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.004906 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.027671 B = 5705.866879 C = 6229.073107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.122 3.878 4 N -0.435 5.435 5 C -0.303 4.303 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.862 5.862 9 Si 0.917 3.083 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.459 3.541 14 O -0.558 6.558 15 C -0.059 4.059 16 H 0.123 0.877 17 C 0.475 3.525 18 O -0.468 6.468 19 O -0.359 6.359 20 C 0.060 3.940 21 C -0.150 4.150 22 C -0.064 4.064 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.102 4.102 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.106 0.894 35 H 0.267 0.733 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 1.180 14.154 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C -0.002 4.002 4 N -0.152 5.152 5 C -0.430 4.430 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.502 5.502 9 Si 0.744 3.256 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.440 6.440 15 C -0.082 4.082 16 H 0.141 0.859 17 C 0.315 3.685 18 O -0.352 6.352 19 O -0.277 6.277 20 C -0.014 4.014 21 C -0.207 4.207 22 C -0.064 4.064 23 C -0.115 4.115 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.121 4.121 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.918 1.030 13.811 14.393 hybrid contribution 0.098 0.140 -0.826 0.843 sum -3.820 1.171 12.985 13.586 Atomic orbital electron populations 1.21586 0.96974 1.00120 1.00711 1.21944 0.94435 0.98121 1.01894 1.21635 0.81109 0.97103 1.00326 1.43687 1.04985 1.61368 1.05200 1.19715 0.94715 1.47450 0.81116 0.87698 1.25157 0.96147 0.96718 0.99101 1.70137 1.13183 1.37641 1.29241 0.86065 0.78430 0.80009 0.81142 1.20544 1.20781 1.19422 1.18806 0.87214 0.85898 0.83645 1.90564 1.13578 1.54769 1.85136 1.20149 1.01413 0.92016 0.94583 0.85884 1.22930 0.84862 0.80834 0.79897 1.90739 1.23708 1.51643 1.69067 1.86502 1.52976 1.58659 1.29561 1.22953 0.93849 0.91762 0.92808 1.21779 1.02012 1.02407 0.94469 1.19192 0.94106 0.94846 0.98296 1.21224 0.98890 0.94811 0.96555 1.21084 0.97681 0.96098 0.99001 1.21110 0.92731 0.99706 1.00431 1.21033 0.98357 0.95252 0.99440 1.21030 0.96584 0.96476 0.97968 0.94507 0.92348 0.94068 0.87894 0.95644 0.94917 0.87634 0.92284 0.91424 0.91433 0.90535 0.91582 0.91551 0.85305 0.86156 0.86338 0.86042 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.13 -2.54 5.40 -26.73 -0.14 -2.68 16 3 C 0.12 2.64 4.19 -4.04 -0.02 2.62 16 4 N -0.43 -11.01 2.63 -114.81 -0.30 -11.31 16 5 C -0.30 -8.32 9.45 -14.93 -0.14 -8.47 16 6 H 0.11 3.09 7.29 -52.48 -0.38 2.71 16 7 C 0.03 0.81 4.92 -17.47 -0.09 0.72 16 8 N -0.86 -21.25 8.52 55.50 0.47 -20.78 16 9 Si 0.92 20.30 29.62 -169.99 -5.03 15.27 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.46 11.47 6.04 -10.98 -0.07 11.40 16 14 O -0.56 -15.94 14.17 -16.73 -0.24 -16.18 16 15 C -0.06 -1.19 2.03 -94.08 -0.19 -1.38 16 16 H 0.12 2.27 4.57 -51.93 -0.24 2.03 16 17 C 0.48 9.65 6.81 36.00 0.25 9.90 16 18 O -0.47 -11.13 14.68 -26.15 -0.38 -11.52 16 19 O -0.36 -6.03 10.13 -39.26 -0.40 -6.43 16 20 C 0.06 0.81 6.19 37.16 0.23 1.04 16 21 C -0.15 -1.43 10.29 37.16 0.38 -1.05 16 22 C -0.06 -1.14 4.61 -104.62 -0.48 -1.62 16 23 C -0.10 -1.73 8.87 -39.58 -0.35 -2.09 16 24 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 25 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 26 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 27 C -0.10 -1.53 9.11 -39.59 -0.36 -1.89 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 2.43 6.41 -51.93 -0.33 2.10 16 32 H 0.02 0.49 6.67 -51.92 -0.35 0.14 16 33 H 0.03 0.62 6.13 -51.93 -0.32 0.31 16 34 H 0.11 2.46 5.89 -51.93 -0.31 2.15 16 35 H 0.27 6.25 8.31 -40.82 -0.34 5.92 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.13 2.59 7.41 -52.48 -0.39 2.20 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.12 1.61 7.85 -52.48 -0.41 1.20 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -31.69 368.85 -8.64 -40.33 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.51 Total: 6.51 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.81 Total: -1.45 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.17 Total: -32.09 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.02 Total: -34.12 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -8.64 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416133416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.824 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds