Wall clock time and date at job start Tue Mar 31 2020 12:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47381 * 2 1 4 4 N 1.46503 * 109.47262 * 184.52871 * 3 2 1 5 5 C 1.37093 * 120.00283 * 94.39611 * 4 3 2 6 6 H 1.08003 * 119.99968 * 172.59757 * 5 4 3 7 7 C 1.38955 * 120.00130 * 352.59129 * 5 4 3 8 8 N 1.31410 * 119.99714 * 335.20216 * 7 5 4 9 9 Si 1.86800 * 119.99928 * 155.19879 * 7 5 4 10 10 H 1.48500 * 109.47186 * 94.99395 * 9 7 5 11 11 H 1.48499 * 109.46816 * 214.99525 * 9 7 5 12 12 H 1.48496 * 109.47260 * 334.99274 * 9 7 5 13 13 C 1.34785 * 119.99651 * 274.39881 * 4 3 2 14 14 O 1.21293 * 119.99556 * 184.98055 * 13 4 3 15 15 C 1.50698 * 119.99807 * 4.97405 * 13 4 3 16 16 H 1.08994 * 109.47182 * 20.57521 * 15 13 4 17 17 C 1.50698 * 109.46818 * 140.57705 * 15 13 4 18 18 O 1.20826 * 120.00321 * 0.02562 * 17 15 13 19 19 O 1.34232 * 120.00093 * 179.71890 * 17 15 13 20 20 C 1.45198 * 117.00033 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.46925 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.46911 * 260.57532 * 15 13 4 23 23 C 1.38239 * 120.00105 * 299.73853 * 22 15 13 24 24 C 1.38240 * 120.00008 * 179.81239 * 23 22 15 25 25 C 1.38228 * 119.99746 * 0.39730 * 24 23 22 26 26 C 1.38235 * 120.00226 * 359.85930 * 25 24 23 27 27 C 1.38230 * 119.99981 * 120.01899 * 22 15 13 28 28 H 1.09001 * 109.46786 * 300.00114 * 1 2 3 29 29 H 1.08996 * 109.47246 * 60.00072 * 1 2 3 30 30 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47122 * 239.99183 * 2 1 3 32 32 H 1.09011 * 109.46855 * 120.00008 * 2 1 3 33 33 H 1.08996 * 109.47753 * 64.52235 * 3 2 1 34 34 H 1.09001 * 109.47160 * 304.52251 * 3 2 1 35 35 H 0.96996 * 119.99887 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47542 * 300.00526 * 20 19 17 37 37 H 1.09004 * 109.46844 * 60.00904 * 20 19 17 38 38 H 1.08998 * 109.46969 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47232 * 300.00461 * 21 20 19 40 40 H 1.09000 * 109.46788 * 60.00129 * 21 20 19 41 41 H 1.08003 * 120.00078 * 0.02562 * 23 22 15 42 42 H 1.07996 * 119.99686 * 180.23115 * 24 23 22 43 43 H 1.08005 * 119.99846 * 179.83327 * 25 24 23 44 44 H 1.08008 * 120.00149 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00355 * 359.97148 * 27 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5010 1.4438 -0.1091 5 6 4.0966 1.5666 -1.3377 6 1 5.1674 1.6879 -1.4091 7 6 3.3226 1.5349 -2.4913 8 7 2.1584 0.9255 -2.4848 9 14 3.9371 2.3586 -4.0513 10 1 4.6187 1.3537 -4.9062 11 1 2.7873 2.9391 -4.7903 12 1 4.8937 3.4378 -3.6973 13 6 4.2595 1.3243 0.9987 14 8 5.4664 1.4160 0.9199 15 6 3.6081 1.0770 2.3349 16 1 2.6092 0.6685 2.1820 17 6 4.4367 0.0962 3.1238 18 8 5.4523 -0.3553 2.6498 19 8 4.0498 -0.2712 4.3555 20 6 4.8962 -1.2199 5.0567 21 6 4.2980 -1.5165 6.4334 22 6 3.5091 2.3754 3.0934 23 6 4.6556 3.0795 3.4111 24 6 4.5645 4.2725 4.1035 25 6 3.3276 4.7572 4.4855 26 6 2.1816 4.0505 4.1725 27 6 2.2723 2.8594 3.4767 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.7445 1.9324 0.9277 34 1 1.6121 1.9791 -0.8467 35 1 1.6179 0.9036 -3.2900 36 1 4.9602 -2.1439 4.4820 37 1 5.8937 -0.7970 5.1771 38 1 4.9337 -2.2283 6.9600 39 1 4.2337 -0.5927 7.0083 40 1 3.3007 -1.9395 6.3126 41 1 5.6222 2.6993 3.1153 42 1 5.4599 4.8244 4.3484 43 1 3.2567 5.6879 5.0288 44 1 1.2151 4.4290 4.4713 45 1 1.3769 2.3074 3.2321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416133416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:22 Heat of formation + Delta-G solvation = -100.545796 kcal Electronic energy + Delta-G solvation = -28270.072701 eV Core-core repulsion = 24445.648415 eV Total energy + Delta-G solvation = -3824.424286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13625 -40.52312 -39.65935 -37.81915 -37.07694 -34.71642 -33.78455 -33.14432 -32.46798 -31.80508 -29.45342 -27.59009 -26.29339 -24.54474 -23.56911 -23.01906 -22.75978 -22.23137 -20.56762 -19.09947 -18.83221 -18.18722 -17.77820 -17.47991 -17.11970 -16.47304 -16.34493 -15.81263 -15.48936 -15.37950 -15.24644 -15.08010 -14.71555 -14.30978 -14.06910 -13.94401 -13.65561 -13.60378 -13.56510 -13.40738 -13.11453 -12.90793 -12.69094 -12.57356 -12.51662 -12.19044 -12.13768 -12.09125 -12.04649 -11.86668 -11.57361 -11.52657 -11.39002 -10.77299 -10.50590 -9.82874 -9.68883 -9.63731 -8.33245 -5.82881 0.30443 0.48933 1.06523 1.26904 1.41531 1.45433 1.54546 2.05001 2.28839 2.77077 3.02650 3.10365 3.52221 3.69165 3.79021 3.93925 3.96328 4.07277 4.14245 4.19246 4.29181 4.30194 4.34721 4.53420 4.61855 4.65895 4.70287 4.80200 4.86799 4.91032 5.00296 5.07537 5.09523 5.14686 5.24337 5.36172 5.39326 5.46696 5.53953 5.59712 5.61101 5.63966 5.92540 6.04328 6.10120 6.52967 6.66418 7.17488 7.44531 8.01942 8.63500 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.004906 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.027671 B = 5705.866879 C = 6229.073107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.124 3.876 4 N -0.443 5.443 5 C -0.352 4.352 6 H 0.066 0.934 7 C 0.012 3.988 8 N -0.856 5.856 9 Si 0.976 3.024 10 H -0.278 1.278 11 H -0.260 1.260 12 H -0.282 1.282 13 C 0.445 3.555 14 O -0.611 6.611 15 C -0.047 4.047 16 H 0.141 0.859 17 C 0.478 3.522 18 O -0.516 6.516 19 O -0.349 6.349 20 C 0.048 3.952 21 C -0.139 4.139 22 C -0.089 4.089 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.105 4.105 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.275 0.725 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 2.428 16.087 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 C 0.002 3.998 4 N -0.161 5.161 5 C -0.479 4.479 6 H 0.084 0.916 7 C -0.192 4.192 8 N -0.494 5.494 9 Si 0.800 3.200 10 H -0.204 1.204 11 H -0.185 1.185 12 H -0.207 1.207 13 C 0.233 3.767 14 O -0.497 6.497 15 C -0.070 4.070 16 H 0.158 0.842 17 C 0.320 3.680 18 O -0.404 6.404 19 O -0.266 6.266 20 C -0.026 4.026 21 C -0.195 4.195 22 C -0.089 4.089 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.123 4.123 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.182 0.818 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.585 2.263 15.765 17.640 hybrid contribution 1.218 -0.247 -1.371 1.850 sum -6.367 2.015 14.394 15.868 Atomic orbital electron populations 1.21505 0.93562 1.01536 1.01805 1.21807 0.97291 0.96521 1.00189 1.21729 0.78920 0.98213 1.00971 1.43897 1.06531 1.60947 1.04697 1.19495 0.93690 1.51499 0.83224 0.91552 1.25748 0.96422 0.96115 1.00883 1.70204 1.13059 1.35890 1.30213 0.85217 0.78329 0.78607 0.77857 1.20438 1.18463 1.20702 1.19591 0.86886 0.84881 0.85325 1.90511 1.16006 1.56843 1.86362 1.19939 1.01053 0.93803 0.92161 0.84168 1.23080 0.84095 0.80099 0.80698 1.90714 1.25781 1.53442 1.70424 1.86489 1.53172 1.59048 1.27842 1.23381 0.93833 0.90750 0.94597 1.21801 1.02721 1.03389 0.91635 1.19148 0.95612 0.94173 1.00008 1.21090 0.97433 0.96977 0.99097 1.21330 0.99815 0.94869 0.98313 1.21588 0.91558 1.00652 0.99017 1.21540 1.00231 0.93824 0.97387 1.21330 0.95731 0.97459 0.97742 0.91514 0.93094 0.92539 0.91744 0.95277 0.92016 0.89257 0.91427 0.91656 0.92129 0.87801 0.91079 0.90705 0.89461 0.84496 0.82364 0.81840 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.12 -4.78 5.40 30.59 0.17 -4.61 16 3 C 0.12 5.39 4.19 86.38 0.36 5.75 16 4 N -0.44 -23.60 2.63 -635.53 -1.67 -25.27 16 5 C -0.35 -20.54 9.45 84.04 0.79 -19.75 16 6 H 0.07 4.29 7.29 -2.91 -0.02 4.27 16 7 C 0.01 0.65 4.92 84.93 0.42 1.06 16 8 N -0.86 -42.37 8.52 21.66 0.18 -42.18 16 9 Si 0.98 42.40 29.62 68.60 2.03 44.43 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 C 0.45 23.77 6.04 87.65 0.53 24.30 16 14 O -0.61 -38.23 14.17 18.23 0.26 -37.97 16 15 C -0.05 -1.97 2.03 -13.03 -0.03 -2.00 16 16 H 0.14 5.14 4.57 -2.39 -0.01 5.13 16 17 C 0.48 20.47 6.81 71.24 0.49 20.95 16 18 O -0.52 -26.53 14.68 29.04 0.43 -26.10 16 19 O -0.35 -11.84 10.13 -51.44 -0.52 -12.36 16 20 C 0.05 1.30 6.19 71.98 0.45 1.74 16 21 C -0.14 -2.37 10.29 71.98 0.74 -1.63 16 22 C -0.09 -3.18 4.61 -19.87 -0.09 -3.28 16 23 C -0.13 -4.77 8.87 22.27 0.20 -4.57 16 24 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 25 C -0.11 -2.39 10.05 22.27 0.22 -2.17 16 26 C -0.11 -2.37 10.05 22.27 0.22 -2.14 16 27 C -0.10 -2.82 9.11 22.27 0.20 -2.61 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 3.09 6.41 -2.39 -0.02 3.07 16 32 H 0.03 1.11 6.67 -2.38 -0.02 1.10 16 33 H 0.06 2.28 6.13 -2.39 -0.01 2.26 16 34 H 0.09 4.15 5.89 -2.39 -0.01 4.14 16 35 H 0.28 12.66 8.31 -92.71 -0.77 11.89 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.71 8.13 -2.39 -0.02 1.70 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 3.91 7.41 -2.91 -0.02 3.89 16 42 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.15 3.19 7.85 -2.91 -0.02 3.17 16 Total: -1.00 -77.01 368.85 7.30 -69.71 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.99 Total: 25.12 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.61 Total: 4.63 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.49 Total: -67.45 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: 0.16 Total: -76.44 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -77.01 7.30 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416133416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.835 kcal (2) G-P(sol) polarization free energy of solvation -77.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds