Wall clock time and date at job start Tue Mar 31 2020 12:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 N 1.46499 * 109.47403 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00024 * 82.97077 * 4 3 2 6 6 H 1.07999 * 120.00173 * 169.60302 * 5 4 3 7 7 C 1.38956 * 120.00119 * 349.60866 * 5 4 3 8 8 N 1.31410 * 119.99748 * 6.73233 * 7 5 4 9 9 Si 1.86795 * 119.99968 * 186.73080 * 7 5 4 10 10 H 1.48501 * 109.47240 * 60.00086 * 9 7 5 11 11 H 1.48505 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47300 * 300.00038 * 9 7 5 13 13 C 1.34772 * 120.00095 * 262.97784 * 4 3 2 14 14 O 1.21293 * 120.00044 * 4.26367 * 13 4 3 15 15 C 1.50696 * 120.00135 * 184.27364 * 13 4 3 16 16 H 1.09000 * 109.47298 * 336.46693 * 15 13 4 17 17 C 1.50702 * 109.47154 * 216.47058 * 15 13 4 18 18 O 1.20826 * 119.99712 * 359.97438 * 17 15 13 19 19 O 1.34230 * 120.00322 * 179.97438 * 17 15 13 20 20 C 1.45192 * 117.00236 * 179.97438 * 19 17 15 21 21 C 1.52999 * 109.47351 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.47619 * 96.46875 * 15 13 4 23 23 C 1.38236 * 119.99833 * 233.76760 * 22 15 13 24 24 C 1.38237 * 119.99519 * 180.02562 * 23 22 15 25 25 C 1.38234 * 119.99937 * 359.95292 * 24 23 22 26 26 C 1.38230 * 120.00308 * 359.97438 * 25 24 23 27 27 C 1.38233 * 119.99944 * 0.07614 * 26 25 24 28 28 H 1.08995 * 109.47380 * 299.99882 * 1 2 3 29 29 H 1.09001 * 109.46744 * 60.00321 * 1 2 3 30 30 H 1.08998 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47517 * 239.99792 * 2 1 3 32 32 H 1.09005 * 109.46960 * 120.00149 * 2 1 3 33 33 H 1.08997 * 109.47453 * 59.99351 * 3 2 1 34 34 H 1.09005 * 109.47273 * 299.99958 * 3 2 1 35 35 H 0.96992 * 120.00062 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47567 * 300.00206 * 20 19 17 37 37 H 1.09009 * 109.47200 * 59.99971 * 20 19 17 38 38 H 1.08999 * 109.47321 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.47042 * 300.00225 * 21 20 19 40 40 H 1.08998 * 109.47313 * 60.00157 * 21 20 19 41 41 H 1.07995 * 120.00462 * 359.97187 * 23 22 15 42 42 H 1.07999 * 119.99793 * 179.97438 * 24 23 22 43 43 H 1.08009 * 119.99611 * 179.72690 * 25 24 23 44 44 H 1.07998 * 119.99981 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.99986 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1910 1.2970 -1.1775 6 1 5.2577 1.4636 -1.2053 7 6 3.5139 0.9354 -2.3357 8 7 2.2018 0.8617 -2.3338 9 14 4.4686 0.5539 -3.8952 10 1 5.3880 -0.5855 -3.6466 11 1 3.5206 0.1965 -4.9810 12 1 5.2562 1.7468 -4.2978 13 6 4.1784 1.5854 1.1593 14 8 3.5740 1.6362 2.2097 15 6 5.6822 1.6822 1.1498 16 1 6.0706 1.2171 0.2437 17 6 6.2389 0.9722 2.3570 18 8 5.4911 0.4424 3.1444 19 8 7.5654 0.9284 2.5574 20 6 8.0305 0.2280 3.7411 21 6 9.5583 0.2842 3.7998 22 6 6.0927 3.1318 1.1860 23 6 6.9540 3.6304 0.2266 24 6 7.3308 4.9600 0.2601 25 6 6.8456 5.7910 1.2525 26 6 5.9832 5.2928 2.2110 27 6 5.6071 3.9630 2.1780 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.7291 0.6089 -3.1422 36 1 7.6155 0.7022 4.6305 37 1 7.7061 -0.8119 3.6990 38 1 9.9074 -0.2420 4.6882 39 1 9.9737 -0.1898 2.9105 40 1 9.8823 1.3240 3.8422 41 1 7.3331 2.9811 -0.5486 42 1 8.0041 5.3495 -0.4892 43 1 7.1436 6.8288 1.2812 44 1 5.6045 5.9420 2.9865 45 1 4.9336 3.5736 2.9271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416133417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:26 Heat of formation + Delta-G solvation = -79.555953 kcal Electronic energy + Delta-G solvation = -28114.546129 eV Core-core repulsion = 24291.032031 eV Total energy + Delta-G solvation = -3823.514098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47005 -38.94194 -38.15961 -36.20303 -35.13369 -33.05359 -31.98572 -31.49759 -31.28619 -30.57111 -27.96231 -25.79575 -24.48103 -23.25642 -22.30900 -21.70605 -21.16911 -20.10297 -19.11265 -17.50004 -17.14887 -16.72536 -16.23395 -15.91255 -15.49515 -14.88217 -14.50520 -14.23775 -13.99139 -13.88096 -13.57380 -13.53362 -13.11751 -13.02850 -12.67832 -12.65450 -12.33508 -12.22562 -11.89058 -11.65525 -11.55337 -11.43990 -11.28891 -11.03840 -10.91589 -10.76181 -10.61788 -10.42660 -10.32013 -10.26850 -10.12895 -9.83714 -9.68844 -8.81884 -8.66378 -8.58988 -8.14241 -7.73709 -6.25148 -3.95044 1.58792 1.72957 2.73073 2.89669 3.08400 3.16225 3.16424 3.83510 4.00381 4.11261 4.72508 4.92945 4.99506 5.01617 5.11695 5.19440 5.22699 5.31933 5.36126 5.44337 5.70904 5.72977 5.80484 5.82271 5.93995 5.97226 6.03923 6.22403 6.22877 6.27079 6.37616 6.51188 6.73394 6.74952 6.79202 6.80696 6.93056 6.97938 7.13391 7.18082 7.24374 7.30348 7.54023 7.77698 7.88700 8.27127 8.43166 9.01748 9.47606 9.87595 10.57872 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.005156 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.158351 B = 5429.142423 C = 5916.448279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C 0.138 3.862 4 N -0.434 5.434 5 C -0.331 4.331 6 H 0.097 0.903 7 C 0.035 3.965 8 N -0.860 5.860 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.468 3.532 14 O -0.576 6.576 15 C -0.054 4.054 16 H 0.132 0.868 17 C 0.474 3.526 18 O -0.472 6.472 19 O -0.359 6.359 20 C 0.061 3.939 21 C -0.150 4.150 22 C -0.058 4.058 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.101 4.101 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.116 0.884 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.320 3.574 3.454 11.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C 0.015 3.985 4 N -0.152 5.152 5 C -0.459 4.459 6 H 0.115 0.885 7 C -0.169 4.169 8 N -0.499 5.499 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.254 3.746 14 O -0.460 6.460 15 C -0.076 4.076 16 H 0.150 0.850 17 C 0.314 3.686 18 O -0.356 6.356 19 O -0.277 6.277 20 C -0.014 4.014 21 C -0.207 4.207 22 C -0.059 4.059 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.119 4.119 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.600 3.365 4.071 10.957 hybrid contribution 0.402 -0.379 -0.833 1.000 sum 10.002 2.986 3.237 10.929 Atomic orbital electron populations 1.21558 0.97619 0.99509 1.00475 1.21839 0.93769 0.98521 1.00995 1.21625 0.78710 0.97088 1.01036 1.43727 1.06095 1.60545 1.04804 1.19658 0.93469 1.46639 0.86119 0.88496 1.25226 0.95770 0.96473 0.99418 1.70158 1.06029 1.45467 1.28278 0.86059 0.79171 0.79135 0.80758 1.19865 1.20698 1.19775 1.18873 0.86450 0.84726 0.84575 1.90595 1.68554 1.56319 1.30528 1.20019 0.97562 0.93561 0.96420 0.85022 1.23107 0.80191 0.78381 0.86879 1.90720 1.58877 1.41507 1.44446 1.86510 1.25380 1.70574 1.45248 1.22929 0.95243 0.96774 0.86405 1.21777 0.93022 1.03186 1.02688 1.19124 0.97642 0.92817 0.96318 1.21039 0.96692 0.95736 0.97806 1.21030 1.00713 0.93671 0.98800 1.21090 0.98148 0.99378 0.95429 1.21055 0.98587 0.95259 0.99249 1.21256 0.98574 0.93649 0.98411 0.94552 0.92715 0.94606 0.89160 0.95645 0.94795 0.86626 0.92145 0.91537 0.91497 0.90607 0.91558 0.91588 0.85673 0.86149 0.86475 0.86316 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.91 37.16 0.37 -2.27 16 2 C -0.11 -2.65 5.49 -26.73 -0.15 -2.80 16 3 C 0.14 3.41 4.74 -4.04 -0.02 3.39 16 4 N -0.43 -10.94 2.64 -114.82 -0.30 -11.24 16 5 C -0.33 -8.02 9.22 -14.93 -0.14 -8.16 16 6 H 0.10 2.17 5.71 -52.49 -0.30 1.87 16 7 C 0.03 0.82 5.18 -17.47 -0.09 0.73 16 8 N -0.86 -20.72 7.32 55.50 0.41 -20.31 16 9 Si 0.92 18.53 29.56 -169.99 -5.02 13.51 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 C 0.47 11.62 5.99 -10.99 -0.07 11.55 16 14 O -0.58 -15.82 13.78 -17.14 -0.24 -16.06 16 15 C -0.05 -1.12 2.29 -94.07 -0.22 -1.33 16 16 H 0.13 2.60 5.58 -51.93 -0.29 2.31 16 17 C 0.47 9.79 6.96 36.01 0.25 10.04 16 18 O -0.47 -11.23 14.58 -26.28 -0.38 -11.61 16 19 O -0.36 -6.19 10.14 -39.26 -0.40 -6.59 16 20 C 0.06 0.83 6.19 37.16 0.23 1.06 16 21 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16 22 C -0.06 -1.09 4.70 -104.62 -0.49 -1.58 16 23 C -0.09 -1.52 9.67 -39.58 -0.38 -1.90 16 24 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 25 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 26 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.10 -1.86 8.98 -39.59 -0.36 -2.22 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.25 5.90 -51.93 -0.31 1.94 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.86 7.28 -51.93 -0.38 0.48 16 34 H 0.12 2.95 5.85 -51.93 -0.30 2.65 16 35 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 36 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 37 H 0.07 0.91 8.13 -51.92 -0.42 0.49 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.13 1.80 7.96 -52.49 -0.42 1.38 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.13 2.65 7.12 -52.49 -0.37 2.28 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -29.89 370.25 -8.80 -38.69 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.58 Total: 9.08 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.87 Total: -1.05 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.10 Total: -31.55 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.02 Total: -34.26 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.89 -8.80 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416133417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.865 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds