Wall clock time and date at job start Tue Mar 31 2020 13:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58222 * 2 1 4 4 C 1.53191 * 109.58709 * 239.72261 * 2 1 3 5 5 H 1.08995 * 109.49896 * 174.89492 * 4 2 1 6 6 C 1.53004 * 109.49986 * 54.79651 * 4 2 1 7 7 O 1.42893 * 109.47064 * 175.00037 * 6 4 2 8 8 C 1.53039 * 109.30970 * 294.84388 * 4 2 1 9 9 C 1.53033 * 109.54163 * 298.63327 * 8 4 2 10 10 C 1.53203 * 109.31055 * 61.36744 * 9 8 4 11 11 N 1.46922 * 109.58616 * 120.28525 * 2 1 3 12 12 S 1.65600 * 120.62986 * 246.17735 * 11 2 1 13 13 O 1.42097 * 104.27521 * 206.07142 * 12 11 2 14 14 O 1.42101 * 104.27770 * 333.93413 * 12 11 2 15 15 C 1.81400 * 104.44877 * 90.00458 * 12 11 2 16 16 C 1.52997 * 109.47517 * 180.02562 * 15 12 11 17 17 C 1.53006 * 109.46522 * 299.99850 * 16 15 12 18 18 C 1.52997 * 109.47059 * 59.99193 * 16 15 12 19 19 C 1.50694 * 109.47495 * 179.97438 * 16 15 12 20 20 H 1.07998 * 120.00094 * 357.69588 * 19 16 15 21 21 C 1.37879 * 120.00298 * 177.69252 * 19 16 15 22 22 N 1.31513 * 119.99577 * 6.57690 * 21 19 16 23 23 Si 1.86793 * 120.00192 * 186.58436 * 21 19 16 24 24 H 1.48503 * 109.47449 * 84.99484 * 23 21 19 25 25 H 1.48500 * 109.47227 * 204.99387 * 23 21 19 26 26 H 1.48500 * 109.46969 * 324.99316 * 23 21 19 27 27 H 1.09010 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47367 * 60.00250 * 1 2 3 29 29 H 1.09000 * 109.47724 * 299.99820 * 1 2 3 30 30 H 1.08999 * 109.46603 * 294.99849 * 6 4 2 31 31 H 1.09000 * 109.46980 * 54.99696 * 6 4 2 32 32 H 0.96703 * 114.00088 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46331 * 58.66167 * 8 4 2 34 34 H 1.09007 * 109.45925 * 178.62967 * 8 4 2 35 35 H 1.08998 * 109.50432 * 181.31627 * 9 8 4 36 36 H 1.09001 * 109.50008 * 301.42015 * 9 8 4 37 37 H 1.08999 * 109.58504 * 65.15148 * 10 9 8 38 38 H 1.08991 * 109.58675 * 185.57837 * 10 9 8 39 39 H 1.09009 * 109.46916 * 299.99853 * 15 12 11 40 40 H 1.09000 * 109.47539 * 59.99633 * 15 12 11 41 41 H 1.08995 * 109.46957 * 66.66978 * 17 16 15 42 42 H 1.09005 * 109.46805 * 186.66449 * 17 16 15 43 43 H 1.08997 * 109.47037 * 306.66516 * 17 16 15 44 44 H 1.09002 * 109.46913 * 60.00989 * 18 16 15 45 45 H 1.09005 * 109.46981 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47476 * 300.00717 * 18 16 15 47 47 H 0.97002 * 119.99691 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2464 5 1 3.1297 -0.6486 -1.2922 6 6 1.4314 -0.0931 -2.4968 7 8 1.9987 -0.6943 -3.6624 8 6 1.6415 -2.2025 -1.1730 9 6 2.2801 -2.8464 0.0596 10 6 1.7692 -2.1427 1.3209 11 7 2.0225 -0.6981 1.1953 12 16 2.8476 0.1240 2.3725 13 8 3.6608 -0.8661 2.9869 14 8 3.4267 1.2272 1.6892 15 6 1.5591 0.6896 3.5173 16 6 2.2029 1.4727 4.6632 17 6 3.1868 0.5689 5.4089 18 6 2.9497 2.6824 4.0978 19 6 1.1325 1.9431 5.6139 20 1 0.0935 1.7393 5.4009 21 6 1.4794 2.6337 6.7557 22 7 2.7287 2.9950 6.9515 23 14 0.1752 3.0560 8.0245 24 1 -0.0088 1.9067 8.9467 25 1 0.6053 4.2480 8.7987 26 1 -1.1079 3.3492 7.3367 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 0.3531 -0.2521 -2.4941 31 1 1.6410 0.9766 -2.5011 32 1 1.6563 -0.3394 -4.4943 33 1 0.5566 -2.2801 -1.1024 34 1 1.9847 -2.7175 -2.0704 35 1 2.0124 -3.9023 0.0985 36 1 3.3641 -2.7473 0.0016 37 1 0.6987 -2.3175 1.4286 38 1 2.2944 -2.5303 2.1937 39 1 0.8584 1.3339 2.9861 40 1 1.0268 -0.1722 3.9198 41 1 4.0237 0.3251 4.7546 42 1 3.5564 1.0866 6.2941 43 1 2.6811 -0.3487 5.7093 44 1 2.2488 3.3264 3.5665 45 1 3.4088 3.2401 4.9141 46 1 3.7239 2.3426 3.4099 47 1 2.9729 3.4805 7.7550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416652855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:01 Heat of formation + Delta-G solvation = -133.421893 kcal Electronic energy + Delta-G solvation = -27374.220012 eV Core-core repulsion = 23683.814063 eV Total energy + Delta-G solvation = -3690.405949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.52468 -36.72114 -36.59097 -36.26776 -35.27565 -32.69439 -32.50166 -31.67618 -28.05615 -26.65680 -25.91701 -25.72742 -25.23265 -23.34086 -22.16638 -19.65737 -19.28995 -18.16160 -17.60475 -17.48999 -16.01621 -15.68448 -15.46888 -15.27987 -14.89765 -14.74084 -14.47742 -14.30736 -13.66253 -13.41965 -13.13414 -13.04927 -12.92991 -12.56424 -12.51910 -12.23968 -12.06700 -11.71866 -11.66733 -11.36689 -11.23925 -11.08343 -11.04289 -10.96494 -10.79869 -10.70486 -10.48578 -10.44441 -10.36113 -10.30296 -10.08413 -10.02821 -9.66786 -9.56207 -8.92171 -8.62555 -8.38744 -6.04844 -4.16382 0.83409 3.07138 3.25281 3.32341 3.33709 3.99502 4.32972 4.40109 4.48832 4.61677 4.76506 4.86376 5.02415 5.06274 5.14799 5.17641 5.20092 5.26679 5.33421 5.44820 5.51849 5.62631 5.65536 5.74367 5.75697 5.84307 5.89459 5.96239 6.05899 6.16321 6.32954 6.36348 6.39997 6.68513 6.73628 6.78410 6.90563 7.03813 7.30245 7.40756 7.47885 7.66718 7.96669 8.09087 8.32812 8.81921 9.48724 10.96276 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.003768 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.507607 B = 7429.642695 C = 7616.847491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.151 3.849 3 H 0.103 0.897 4 C -0.093 4.093 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.108 4.108 9 C -0.131 4.131 10 C 0.116 3.884 11 N -1.003 6.003 12 S 2.592 3.408 13 O -0.962 6.962 14 O -0.962 6.962 15 C -0.581 4.581 16 C 0.081 3.919 17 C -0.160 4.160 18 C -0.163 4.163 19 C -0.502 4.502 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.882 5.882 23 Si 0.895 3.105 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.377 0.623 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.026 0.974 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.097 0.903 46 H 0.026 0.974 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 -8.225 -16.723 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.044 3.956 3 H 0.121 0.879 4 C -0.114 4.114 5 H 0.101 0.899 6 C 0.001 3.999 7 O -0.378 6.378 8 C -0.146 4.146 9 C -0.170 4.170 10 C -0.009 4.009 11 N -0.838 5.838 12 S 2.692 3.308 13 O -0.952 6.952 14 O -0.953 6.953 15 C -0.715 4.715 16 C 0.079 3.921 17 C -0.218 4.218 18 C -0.221 4.221 19 C -0.542 4.542 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.224 0.776 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.044 0.956 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.116 0.884 46 H 0.045 0.955 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.932 -8.369 -16.115 18.579 hybrid contribution -1.778 0.623 0.497 1.948 sum -5.709 -7.746 -15.618 18.344 Atomic orbital electron populations 1.22331 0.95290 1.02835 1.02591 1.20816 0.94088 0.96608 0.84075 0.87901 1.21423 1.01724 0.96001 0.92209 0.89902 1.22280 0.96376 0.96030 0.85172 1.86474 1.69148 1.66051 1.16107 1.21496 1.00410 0.94579 0.98076 1.21862 1.01336 0.99175 0.94661 1.21457 1.00762 0.79416 0.99282 1.58132 1.75109 1.17095 1.33493 1.05712 0.76817 0.73872 0.74405 1.93529 1.65279 1.59387 1.77022 1.93522 1.75286 1.53933 1.72541 1.30595 1.16311 1.10624 1.13949 1.17934 0.94079 0.90991 0.89081 1.22204 0.97590 0.98550 1.03448 1.22304 0.98822 1.00178 1.00808 1.20929 0.92202 1.35768 1.05267 0.92327 1.24939 0.95526 0.95239 0.98018 1.69814 1.16668 1.38503 1.27029 0.86565 0.81731 0.77907 0.81520 1.20537 1.21182 1.20020 0.91629 0.91519 0.91699 0.93107 0.93281 0.77626 0.91793 0.91248 0.90924 0.91394 0.91627 0.88777 0.86539 0.86480 0.95550 0.88765 0.94616 0.94546 0.88427 0.95508 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 8.52 37.16 0.32 -1.36 16 2 C 0.15 1.87 2.78 -67.60 -0.19 1.68 16 3 H 0.10 1.38 6.86 -51.93 -0.36 1.02 16 4 C -0.09 -1.06 2.36 -90.50 -0.21 -1.27 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 6 C 0.08 0.72 5.76 37.16 0.21 0.93 16 7 O -0.57 -5.29 13.18 -35.23 -0.46 -5.76 16 8 C -0.11 -1.10 4.87 -26.69 -0.13 -1.23 16 9 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 10 C 0.12 1.41 6.03 -3.55 -0.02 1.39 16 11 N -1.00 -14.40 2.94 -106.27 -0.31 -14.71 16 12 S 2.59 48.91 4.49 -107.50 -0.48 48.43 16 13 O -0.96 -20.35 14.37 -57.54 -0.83 -21.17 16 14 O -0.96 -20.32 14.21 -57.54 -0.82 -21.14 16 15 C -0.58 -11.40 5.11 37.16 0.19 -11.21 16 16 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 17 C -0.16 -3.96 7.58 37.16 0.28 -3.68 16 18 C -0.16 -4.05 7.79 37.16 0.29 -3.76 16 19 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 20 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 21 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 22 N -0.88 -24.09 9.39 55.43 0.52 -23.56 16 23 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H 0.06 0.58 5.72 -51.92 -0.30 0.29 16 28 H 0.07 0.52 6.49 -51.93 -0.34 0.18 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.38 6.67 -51.93 -0.35 0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 1.72 9.12 45.56 0.42 2.14 16 33 H 0.06 0.57 6.50 -51.93 -0.34 0.24 16 34 H 0.07 0.72 7.80 -51.93 -0.40 0.31 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.66 7.49 -51.93 -0.39 0.27 16 38 H 0.09 1.23 6.88 -51.93 -0.36 0.87 16 39 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 40 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 41 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 42 H 0.09 2.51 5.99 -51.93 -0.31 2.20 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 46 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 47 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -32.34 356.24 -8.88 -41.22 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.97 Total: 5.80 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 0.13 Total: -30.01 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.21 Total: -38.27 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.11 Total: -48.07 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.48 Total: 48.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.34 -8.88 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416652855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.199 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds