Wall clock time and date at job start Tue Mar 31 2020 13:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58222 * 2 1 4 4 C 1.53191 * 109.58709 * 239.72261 * 2 1 3 5 5 H 1.08995 * 109.49896 * 174.89492 * 4 2 1 6 6 C 1.53004 * 109.49986 * 54.79651 * 4 2 1 7 7 O 1.42893 * 109.47064 * 175.00037 * 6 4 2 8 8 C 1.53039 * 109.30970 * 294.84388 * 4 2 1 9 9 C 1.53033 * 109.54163 * 298.63327 * 8 4 2 10 10 C 1.53203 * 109.31055 * 61.36744 * 9 8 4 11 11 N 1.46922 * 109.58616 * 120.28525 * 2 1 3 12 12 S 1.65600 * 120.62986 * 246.17735 * 11 2 1 13 13 O 1.42097 * 104.27521 * 206.07142 * 12 11 2 14 14 O 1.42101 * 104.27770 * 333.93413 * 12 11 2 15 15 C 1.81400 * 104.44877 * 90.00458 * 12 11 2 16 16 C 1.52997 * 109.47517 * 180.02562 * 15 12 11 17 17 C 1.53006 * 109.46522 * 299.99850 * 16 15 12 18 18 C 1.52997 * 109.47059 * 59.99193 * 16 15 12 19 19 C 1.50694 * 109.47495 * 179.97438 * 16 15 12 20 20 H 1.07998 * 120.00094 * 357.69588 * 19 16 15 21 21 C 1.37879 * 120.00298 * 177.69252 * 19 16 15 22 22 N 1.31513 * 119.99577 * 6.57690 * 21 19 16 23 23 Si 1.86793 * 120.00192 * 186.58436 * 21 19 16 24 24 H 1.48503 * 109.47449 * 84.99484 * 23 21 19 25 25 H 1.48500 * 109.47227 * 204.99387 * 23 21 19 26 26 H 1.48500 * 109.46969 * 324.99316 * 23 21 19 27 27 H 1.09010 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47367 * 60.00250 * 1 2 3 29 29 H 1.09000 * 109.47724 * 299.99820 * 1 2 3 30 30 H 1.08999 * 109.46603 * 294.99849 * 6 4 2 31 31 H 1.09000 * 109.46980 * 54.99696 * 6 4 2 32 32 H 0.96703 * 114.00088 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46331 * 58.66167 * 8 4 2 34 34 H 1.09007 * 109.45925 * 178.62967 * 8 4 2 35 35 H 1.08998 * 109.50432 * 181.31627 * 9 8 4 36 36 H 1.09001 * 109.50008 * 301.42015 * 9 8 4 37 37 H 1.08999 * 109.58504 * 65.15148 * 10 9 8 38 38 H 1.08991 * 109.58675 * 185.57837 * 10 9 8 39 39 H 1.09009 * 109.46916 * 299.99853 * 15 12 11 40 40 H 1.09000 * 109.47539 * 59.99633 * 15 12 11 41 41 H 1.08995 * 109.46957 * 66.66978 * 17 16 15 42 42 H 1.09005 * 109.46805 * 186.66449 * 17 16 15 43 43 H 1.08997 * 109.47037 * 306.66516 * 17 16 15 44 44 H 1.09002 * 109.46913 * 60.00989 * 18 16 15 45 45 H 1.09005 * 109.46981 * 180.02562 * 18 16 15 46 46 H 1.08998 * 109.47476 * 300.00717 * 18 16 15 47 47 H 0.97002 * 119.99691 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2464 5 1 3.1297 -0.6486 -1.2922 6 6 1.4314 -0.0931 -2.4968 7 8 1.9987 -0.6943 -3.6624 8 6 1.6415 -2.2025 -1.1730 9 6 2.2801 -2.8464 0.0596 10 6 1.7692 -2.1427 1.3209 11 7 2.0225 -0.6981 1.1953 12 16 2.8476 0.1240 2.3725 13 8 3.6608 -0.8661 2.9869 14 8 3.4267 1.2272 1.6892 15 6 1.5591 0.6896 3.5173 16 6 2.2029 1.4727 4.6632 17 6 3.1868 0.5689 5.4089 18 6 2.9497 2.6824 4.0978 19 6 1.1325 1.9431 5.6139 20 1 0.0935 1.7393 5.4009 21 6 1.4794 2.6337 6.7557 22 7 2.7287 2.9950 6.9515 23 14 0.1752 3.0560 8.0245 24 1 -0.0088 1.9067 8.9467 25 1 0.6053 4.2480 8.7987 26 1 -1.1079 3.3492 7.3367 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 0.3531 -0.2521 -2.4941 31 1 1.6410 0.9766 -2.5011 32 1 1.6563 -0.3394 -4.4943 33 1 0.5566 -2.2801 -1.1024 34 1 1.9847 -2.7175 -2.0704 35 1 2.0124 -3.9023 0.0985 36 1 3.3641 -2.7473 0.0016 37 1 0.6987 -2.3175 1.4286 38 1 2.2944 -2.5303 2.1937 39 1 0.8584 1.3339 2.9861 40 1 1.0268 -0.1722 3.9198 41 1 4.0237 0.3251 4.7546 42 1 3.5564 1.0866 6.2941 43 1 2.6811 -0.3487 5.7093 44 1 2.2488 3.3264 3.5665 45 1 3.4088 3.2401 4.9141 46 1 3.7239 2.3426 3.4099 47 1 2.9729 3.4805 7.7550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416652855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:01 Heat of formation + Delta-G solvation = -156.773793 kcal Electronic energy + Delta-G solvation = -27375.232627 eV Core-core repulsion = 23683.814063 eV Total energy + Delta-G solvation = -3691.418564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41829 -38.20259 -38.13853 -37.43023 -36.88244 -33.68540 -33.59455 -33.39779 -28.88654 -28.34882 -27.72355 -27.25743 -26.73355 -24.25601 -23.05135 -21.31843 -20.59731 -19.28434 -18.86192 -18.37466 -17.91951 -16.99802 -16.92419 -16.70829 -16.17665 -15.82927 -15.42982 -15.31717 -15.07813 -14.71586 -14.45295 -14.41221 -14.25715 -13.92193 -13.78387 -13.48433 -13.24596 -13.10986 -13.02973 -12.88128 -12.80697 -12.62125 -12.53278 -12.37589 -12.21979 -12.13739 -12.02998 -11.97108 -11.67594 -11.59295 -11.45289 -11.29308 -11.20704 -10.72710 -10.66914 -10.40314 -9.86619 -8.04203 -6.22596 -0.65155 1.44480 1.46022 1.54150 1.77604 2.44003 2.90533 3.15449 3.18926 3.41098 3.54753 3.84705 3.97972 4.04926 4.14231 4.19468 4.24532 4.29101 4.45079 4.49887 4.51684 4.56799 4.62206 4.81395 4.82949 4.83530 4.84896 4.89856 4.96577 5.00517 5.06008 5.07415 5.14275 5.25041 5.34465 5.35401 5.42993 5.46477 5.58221 5.63362 5.72695 5.94213 6.09582 6.33045 6.81917 6.98081 7.45536 8.95664 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.003768 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.507607 B = 7429.642695 C = 7616.847491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 H 0.086 0.914 4 C -0.096 4.096 5 H 0.050 0.950 6 C 0.083 3.917 7 O -0.592 6.592 8 C -0.102 4.102 9 C -0.131 4.131 10 C 0.107 3.893 11 N -0.996 5.996 12 S 2.605 3.395 13 O -0.990 6.990 14 O -0.991 6.991 15 C -0.582 4.582 16 C 0.069 3.931 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.517 4.517 20 H 0.064 0.936 21 C 0.018 3.982 22 N -0.908 5.908 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.266 1.266 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 -9.344 -18.128 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.117 4.117 5 H 0.069 0.931 6 C 0.004 3.996 7 O -0.400 6.400 8 C -0.139 4.139 9 C -0.170 4.170 10 C -0.017 4.017 11 N -0.834 5.834 12 S 2.705 3.295 13 O -0.981 6.981 14 O -0.982 6.982 15 C -0.714 4.714 16 C 0.067 3.933 17 C -0.214 4.214 18 C -0.217 4.217 19 C -0.556 4.556 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.546 5.546 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.191 1.191 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.247 0.753 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.047 0.953 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.771 -9.480 -17.531 21.048 hybrid contribution -0.855 0.940 0.843 1.525 sum -7.626 -8.539 -16.688 20.238 Atomic orbital electron populations 1.22347 0.92592 1.04203 1.03625 1.21049 0.96156 0.95663 0.83415 0.89616 1.21415 0.99994 0.97218 0.93040 0.93109 1.22241 0.97430 0.95725 0.84154 1.86419 1.69855 1.66525 1.17208 1.21474 1.01620 0.93337 0.97504 1.21891 1.00038 1.00677 0.94390 1.21761 1.02676 0.77748 0.99562 1.57790 1.74883 1.17944 1.32797 1.04973 0.76711 0.73279 0.74556 1.93485 1.66537 1.59945 1.78085 1.93476 1.76256 1.55424 1.73021 1.30508 1.16809 1.11196 1.12931 1.17933 0.93802 0.91111 0.90498 1.22133 0.97946 0.98704 1.02589 1.22228 0.98979 1.00532 0.99919 1.21271 0.92860 1.35666 1.05820 0.91755 1.25693 0.97264 0.95354 0.99872 1.69958 1.18292 1.39027 1.27354 0.85620 0.79652 0.77466 0.79197 1.20204 1.21377 1.19086 0.90027 0.89128 0.92130 0.90516 0.93179 0.75281 0.89509 0.91302 0.88303 0.93652 0.88398 0.90011 0.84719 0.84556 0.95602 0.91129 0.93853 0.94169 0.90861 0.95334 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 8.52 71.98 0.61 -2.09 16 2 C 0.14 3.30 2.78 44.98 0.13 3.42 16 3 H 0.09 2.26 6.86 -2.39 -0.02 2.25 16 4 C -0.10 -2.04 2.36 -10.72 -0.03 -2.06 16 5 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 6 C 0.08 1.28 5.76 71.98 0.41 1.70 16 7 O -0.59 -9.63 13.18 -148.98 -1.96 -11.59 16 8 C -0.10 -1.79 4.87 30.62 0.15 -1.64 16 9 C -0.13 -2.56 6.08 30.67 0.19 -2.38 16 10 C 0.11 2.38 6.03 86.31 0.52 2.90 16 11 N -1.00 -27.38 2.94 -490.11 -1.44 -28.82 16 12 S 2.60 98.28 4.49 -56.49 -0.25 98.02 16 13 O -0.99 -42.44 14.37 -127.65 -1.83 -44.27 16 14 O -0.99 -42.68 14.21 -127.65 -1.81 -44.49 16 15 C -0.58 -22.22 5.11 71.98 0.37 -21.85 16 16 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 17 C -0.16 -7.84 7.58 71.98 0.55 -7.29 16 18 C -0.16 -8.03 7.79 71.98 0.56 -7.47 16 19 C -0.52 -26.87 8.01 25.60 0.20 -26.67 16 20 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16 21 C 0.02 0.93 5.09 84.66 0.43 1.36 16 22 N -0.91 -50.49 9.39 21.45 0.20 -50.28 16 23 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H 0.08 1.05 5.72 -2.38 -0.01 1.04 16 28 H 0.09 1.03 6.49 -2.39 -0.02 1.01 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.81 6.67 -2.39 -0.02 0.79 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.40 2.63 9.12 -74.05 -0.68 1.95 16 33 H 0.09 1.15 6.50 -2.39 -0.02 1.14 16 34 H 0.07 1.25 7.80 -2.38 -0.02 1.23 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.57 7.49 -2.39 -0.02 1.55 16 38 H 0.08 2.04 6.88 -2.39 -0.02 2.02 16 39 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 40 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 41 H 0.03 1.25 5.96 -2.39 -0.01 1.24 16 42 H 0.07 3.86 5.99 -2.38 -0.01 3.85 16 43 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 4.05 6.01 -2.38 -0.01 4.03 16 46 H 0.03 1.39 5.46 -2.39 -0.01 1.37 16 47 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -70.73 356.24 -0.72 -71.45 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.29 Total: 24.85 kcal Atomic # 6 Polarization: -62.83 SS G_CDS: 4.07 Total: -58.76 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.24 Total: -79.11 kcal Atomic # 8 Polarization: -94.75 SS G_CDS: -5.61 Total: -100.36 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 98.28 SS G_CDS: -0.25 Total: 98.02 kcal Total: -70.73 -0.72 -71.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416652855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.325 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds