Wall clock time and date at job start Tue Mar 31 2020 13:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49553 * 2 1 4 4 C 1.53036 * 109.50005 * 239.93191 * 2 1 3 5 5 C 1.53041 * 109.53735 * 301.38305 * 4 2 1 6 6 H 1.08999 * 109.50038 * 58.58285 * 5 4 2 7 7 C 1.53005 * 109.49493 * 178.68127 * 5 4 2 8 8 O 1.42906 * 109.46564 * 184.83806 * 7 5 4 9 9 C 1.53191 * 109.31215 * 298.63309 * 5 4 2 10 10 N 1.46925 * 108.77612 * 54.63216 * 9 5 4 11 11 S 1.65599 * 120.62740 * 126.36792 * 10 9 5 12 12 O 1.42105 * 104.27797 * 206.07461 * 11 10 9 13 13 O 1.42101 * 104.27901 * 333.93169 * 11 10 9 14 14 C 1.81397 * 104.44825 * 90.00349 * 11 10 9 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.52992 * 109.47064 * 300.00294 * 15 14 11 17 17 C 1.52995 * 109.46650 * 60.00101 * 15 14 11 18 18 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99943 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99809 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00266 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46833 * 90.00160 * 22 20 18 24 24 H 1.48496 * 109.47064 * 210.00215 * 22 20 18 25 25 H 1.48500 * 109.47150 * 330.00047 * 22 20 18 26 26 C 1.46925 * 118.74022 * 306.64692 * 10 9 5 27 27 H 1.08999 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47453 * 300.06579 * 1 2 3 29 29 H 1.09000 * 109.47393 * 60.06772 * 1 2 3 30 30 H 1.08996 * 109.46401 * 181.35694 * 4 2 1 31 31 H 1.09000 * 109.44475 * 61.39386 * 4 2 1 32 32 H 1.09002 * 109.46986 * 304.83077 * 7 5 4 33 33 H 1.08995 * 109.47030 * 64.83972 * 7 5 4 34 34 H 0.96699 * 113.99681 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.58504 * 294.84844 * 9 5 4 36 36 H 1.08997 * 109.58590 * 174.42266 * 9 5 4 37 37 H 1.09004 * 109.47032 * 299.99803 * 14 11 10 38 38 H 1.09000 * 109.47124 * 60.00075 * 14 11 10 39 39 H 1.08998 * 109.47786 * 59.99779 * 16 15 14 40 40 H 1.09005 * 109.47213 * 179.97438 * 16 15 14 41 41 H 1.09009 * 109.46944 * 299.99524 * 16 15 14 42 42 H 1.09004 * 109.47448 * 60.00057 * 17 15 14 43 43 H 1.09003 * 109.46897 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47695 * 299.99731 * 17 15 14 45 45 H 0.97001 * 119.99986 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58276 * 173.14177 * 26 10 9 47 47 H 1.08993 * 109.58751 * 293.56745 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1557 -1.2660 6 1 0.4139 -2.1360 -1.2538 7 6 1.9881 -2.8671 -2.5311 8 8 1.3958 -4.1656 -2.6036 9 6 2.0153 -2.9038 -0.0310 10 7 1.6529 -2.1381 1.1695 11 16 0.8210 -2.8557 2.4086 12 8 0.1349 -1.7822 3.0380 13 8 0.1084 -3.9152 1.7849 14 6 2.1124 -3.5128 3.4999 15 6 1.4626 -4.2079 4.6981 16 6 0.6068 -3.2011 5.4692 17 6 0.5794 -5.3556 4.2045 18 6 2.5354 -4.7544 5.6044 19 1 3.5766 -4.6191 5.3514 20 6 2.1878 -5.4262 6.7572 21 7 0.9199 -5.5905 7.0655 22 14 3.5177 -6.1029 7.8810 23 1 3.8858 -5.0747 8.8872 24 1 3.0108 -7.3145 8.5739 25 1 4.7136 -6.4574 7.0751 26 6 2.0371 -0.7221 1.2470 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 3.1305 -0.7435 -1.2358 31 1 1.6981 -0.1955 -2.1387 32 1 1.6995 -2.2867 -3.4074 33 1 3.0733 -2.9639 -2.5005 34 1 1.6592 -4.6751 -3.3822 35 1 3.0993 -3.0035 -0.0872 36 1 1.5572 -3.8918 0.0136 37 1 2.7223 -4.2298 2.9503 38 1 2.7414 -2.6951 3.8519 39 1 -0.1692 -2.8062 4.8136 40 1 0.1435 -3.6964 6.3226 41 1 1.2361 -2.3835 5.8209 42 1 1.1891 -6.0729 3.6550 43 1 0.1168 -5.8511 5.0581 44 1 -0.1967 -4.9608 3.5487 45 1 0.6754 -6.0635 7.8763 46 1 1.5933 -0.2712 2.1346 47 1 3.1228 -0.6403 1.2971 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420769708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:38 Heat of formation + Delta-G solvation = -133.560606 kcal Electronic energy + Delta-G solvation = -27372.492829 eV Core-core repulsion = 23682.080865 eV Total energy + Delta-G solvation = -3690.411964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42351 -36.80836 -36.48783 -36.22832 -35.21553 -33.14881 -32.33320 -31.63324 -27.04298 -26.62956 -25.94312 -25.68490 -25.20786 -24.38537 -21.65669 -19.55789 -19.32002 -18.15405 -17.47520 -17.30655 -16.04644 -15.94207 -15.49567 -15.14260 -14.91045 -14.64282 -14.29597 -14.21241 -13.88680 -13.50174 -13.26253 -12.97599 -12.94470 -12.47464 -12.38405 -12.08896 -11.90163 -11.69181 -11.45293 -11.26162 -11.20310 -11.11989 -11.03228 -10.94760 -10.86801 -10.67796 -10.53099 -10.36371 -10.25860 -10.22403 -10.14027 -10.06031 -9.62218 -9.52455 -8.84906 -8.55308 -8.38043 -6.01197 -4.13140 0.89367 3.15880 3.26988 3.34135 3.36344 3.99956 4.36034 4.45119 4.56125 4.61105 4.73376 4.80401 4.91766 5.06499 5.21262 5.23842 5.28403 5.33531 5.40068 5.49145 5.54984 5.64505 5.72029 5.74329 5.77268 5.87133 5.91197 6.01404 6.05522 6.15345 6.33718 6.40171 6.42012 6.73739 6.78930 6.83156 6.94318 7.07969 7.34423 7.48364 7.53405 7.69904 8.00621 8.12264 8.35639 8.85273 9.52056 11.00109 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.003950 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.147585 B = 7087.310674 C = 7501.945283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.105 4.105 5 C -0.104 4.104 6 H 0.088 0.912 7 C 0.082 3.918 8 O -0.568 6.568 9 C 0.127 3.873 10 N -1.007 6.007 11 S 2.592 3.408 12 O -0.961 6.961 13 O -0.959 6.959 14 C -0.583 4.583 15 C 0.081 3.919 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.501 4.501 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.119 3.881 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.028 0.972 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.262 0.738 46 H 0.095 0.905 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 9.286 -18.013 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.142 4.142 5 C -0.124 4.124 6 H 0.106 0.894 7 C 0.004 3.996 8 O -0.373 6.373 9 C 0.002 3.998 10 N -0.843 5.843 11 S 2.691 3.309 12 O -0.952 6.952 13 O -0.950 6.950 14 C -0.716 4.716 15 C 0.079 3.921 16 C -0.220 4.220 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.006 4.006 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.224 0.776 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.721 9.386 -17.247 19.824 hybrid contribution 1.802 -0.603 0.185 1.909 sum 4.523 8.783 -17.062 19.716 Atomic orbital electron populations 1.21899 0.94764 1.02512 1.01715 1.21318 0.96804 0.99044 0.94831 0.90042 1.21486 1.00475 0.94357 0.97910 1.21532 1.02542 0.94602 0.93683 0.89398 1.22186 0.96253 0.84066 0.97124 1.86579 1.72765 1.28537 1.49413 1.21365 0.99584 0.95647 0.83210 1.57974 1.75989 1.18416 1.31915 1.05736 0.76841 0.74271 0.74047 1.93520 1.71019 1.54474 1.76173 1.93541 1.69848 1.57010 1.74575 1.30586 1.16459 1.11026 1.13575 1.17931 0.94070 0.91771 0.88315 1.22265 0.98626 0.98084 1.03069 1.22269 0.98580 0.99909 1.01340 1.20946 0.91918 1.35537 1.05660 0.92367 1.24942 0.95489 0.95776 0.97544 1.69807 1.15356 1.41815 1.25213 0.86537 0.81824 0.78546 0.80741 1.20656 1.21118 1.19973 1.21378 0.99586 0.80434 0.99228 0.92284 0.91972 0.92915 0.91604 0.91723 0.93613 0.93546 0.77616 0.91979 0.88106 0.86562 0.86578 0.95356 0.88687 0.94542 0.94496 0.88679 0.95364 0.92763 0.88646 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.70 37.16 0.32 -1.46 16 2 C -0.10 -1.02 3.20 -90.72 -0.29 -1.31 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.10 -0.93 4.71 -26.69 -0.13 -1.06 16 5 C -0.10 -1.15 2.24 -90.50 -0.20 -1.36 16 6 H 0.09 1.15 6.34 -51.93 -0.33 0.82 16 7 C 0.08 0.73 6.43 37.16 0.24 0.97 16 8 O -0.57 -5.98 13.31 -35.23 -0.47 -6.45 16 9 C 0.13 1.69 5.55 -3.71 -0.02 1.67 16 10 N -1.01 -14.87 2.67 -113.77 -0.30 -15.17 16 11 S 2.59 50.18 4.49 -107.50 -0.48 49.70 16 12 O -0.96 -20.34 14.20 -57.54 -0.82 -21.16 16 13 O -0.96 -21.08 14.21 -57.54 -0.82 -21.90 16 14 C -0.58 -11.83 5.12 37.16 0.19 -11.64 16 15 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 16 C -0.16 -4.09 7.77 37.15 0.29 -3.80 16 17 C -0.16 -4.14 7.77 37.16 0.29 -3.85 16 18 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.44 9.35 55.43 0.52 -23.92 16 22 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.12 1.45 5.79 -3.93 -0.02 1.43 16 27 H 0.06 0.82 5.97 -51.93 -0.31 0.51 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.38 2.10 9.12 45.56 0.42 2.52 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.56 6.70 -51.93 -0.35 1.21 16 37 H 0.12 2.18 8.14 -51.92 -0.42 1.75 16 38 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 39 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 40 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 41 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16 44 H 0.03 0.68 5.47 -51.93 -0.28 0.40 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.10 1.25 6.85 -51.93 -0.36 0.90 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -32.97 359.99 -8.91 -41.88 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.16 Total: 6.27 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 0.22 Total: -30.49 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.21 Total: -39.10 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -2.10 Total: -49.51 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.48 Total: 49.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.97 -8.91 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420769708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.678 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds