Wall clock time and date at job start Tue Mar 31 2020 13:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49553 * 2 1 4 4 C 1.53036 * 109.50005 * 239.93191 * 2 1 3 5 5 C 1.53041 * 109.53735 * 301.38305 * 4 2 1 6 6 H 1.08999 * 109.50038 * 58.58285 * 5 4 2 7 7 C 1.53005 * 109.49493 * 178.68127 * 5 4 2 8 8 O 1.42906 * 109.46564 * 184.83806 * 7 5 4 9 9 C 1.53191 * 109.31215 * 298.63309 * 5 4 2 10 10 N 1.46925 * 108.77612 * 54.63216 * 9 5 4 11 11 S 1.65599 * 120.62740 * 126.36792 * 10 9 5 12 12 O 1.42105 * 104.27797 * 206.07461 * 11 10 9 13 13 O 1.42101 * 104.27901 * 333.93169 * 11 10 9 14 14 C 1.81397 * 104.44825 * 90.00349 * 11 10 9 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.52992 * 109.47064 * 300.00294 * 15 14 11 17 17 C 1.52995 * 109.46650 * 60.00101 * 15 14 11 18 18 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 19 19 H 1.07997 * 120.00322 * 0.02562 * 18 15 14 20 20 C 1.37880 * 119.99943 * 179.97438 * 18 15 14 21 21 N 1.31518 * 119.99809 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00266 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46833 * 90.00160 * 22 20 18 24 24 H 1.48496 * 109.47064 * 210.00215 * 22 20 18 25 25 H 1.48500 * 109.47150 * 330.00047 * 22 20 18 26 26 C 1.46925 * 118.74022 * 306.64692 * 10 9 5 27 27 H 1.08999 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47453 * 300.06579 * 1 2 3 29 29 H 1.09000 * 109.47393 * 60.06772 * 1 2 3 30 30 H 1.08996 * 109.46401 * 181.35694 * 4 2 1 31 31 H 1.09000 * 109.44475 * 61.39386 * 4 2 1 32 32 H 1.09002 * 109.46986 * 304.83077 * 7 5 4 33 33 H 1.08995 * 109.47030 * 64.83972 * 7 5 4 34 34 H 0.96699 * 113.99681 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.58504 * 294.84844 * 9 5 4 36 36 H 1.08997 * 109.58590 * 174.42266 * 9 5 4 37 37 H 1.09004 * 109.47032 * 299.99803 * 14 11 10 38 38 H 1.09000 * 109.47124 * 60.00075 * 14 11 10 39 39 H 1.08998 * 109.47786 * 59.99779 * 16 15 14 40 40 H 1.09005 * 109.47213 * 179.97438 * 16 15 14 41 41 H 1.09009 * 109.46944 * 299.99524 * 16 15 14 42 42 H 1.09004 * 109.47448 * 60.00057 * 17 15 14 43 43 H 1.09003 * 109.46897 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47695 * 299.99731 * 17 15 14 45 45 H 0.97001 * 119.99986 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58276 * 173.14177 * 26 10 9 47 47 H 1.08993 * 109.58751 * 293.56745 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1557 -1.2660 6 1 0.4139 -2.1360 -1.2538 7 6 1.9881 -2.8671 -2.5311 8 8 1.3958 -4.1656 -2.6036 9 6 2.0153 -2.9038 -0.0310 10 7 1.6529 -2.1381 1.1695 11 16 0.8210 -2.8557 2.4086 12 8 0.1349 -1.7822 3.0380 13 8 0.1084 -3.9152 1.7849 14 6 2.1124 -3.5128 3.4999 15 6 1.4626 -4.2079 4.6981 16 6 0.6068 -3.2011 5.4692 17 6 0.5794 -5.3556 4.2045 18 6 2.5354 -4.7544 5.6044 19 1 3.5766 -4.6191 5.3514 20 6 2.1878 -5.4262 6.7572 21 7 0.9199 -5.5905 7.0655 22 14 3.5177 -6.1029 7.8810 23 1 3.8858 -5.0747 8.8872 24 1 3.0108 -7.3145 8.5739 25 1 4.7136 -6.4574 7.0751 26 6 2.0371 -0.7221 1.2470 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 3.1305 -0.7435 -1.2358 31 1 1.6981 -0.1955 -2.1387 32 1 1.6995 -2.2867 -3.4074 33 1 3.0733 -2.9639 -2.5005 34 1 1.6592 -4.6751 -3.3822 35 1 3.0993 -3.0035 -0.0872 36 1 1.5572 -3.8918 0.0136 37 1 2.7223 -4.2298 2.9503 38 1 2.7414 -2.6951 3.8519 39 1 -0.1692 -2.8062 4.8136 40 1 0.1435 -3.6964 6.3226 41 1 1.2361 -2.3835 5.8209 42 1 1.1891 -6.0729 3.6550 43 1 0.1168 -5.8511 5.0581 44 1 -0.1967 -4.9608 3.5487 45 1 0.6754 -6.0635 7.8763 46 1 1.5933 -0.2712 2.1346 47 1 3.1228 -0.6403 1.2971 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420769708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:37 Heat of formation + Delta-G solvation = -157.504542 kcal Electronic energy + Delta-G solvation = -27373.531116 eV Core-core repulsion = 23682.080865 eV Total energy + Delta-G solvation = -3691.450251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.30163 -38.19659 -38.14691 -37.47930 -36.86487 -34.16376 -33.64398 -33.18460 -28.37630 -27.95842 -27.72889 -27.26933 -26.68061 -25.41436 -22.48787 -21.32075 -20.51935 -19.34564 -18.87156 -18.09995 -17.91370 -17.20216 -16.96288 -16.71778 -16.23851 -15.78815 -15.38215 -15.28321 -14.98139 -14.69916 -14.55527 -14.45348 -14.28789 -14.15491 -13.82623 -13.43783 -13.28955 -13.10164 -12.90230 -12.87040 -12.77860 -12.58459 -12.45173 -12.24735 -12.17552 -12.13907 -12.01836 -11.97109 -11.74485 -11.60021 -11.42344 -11.35860 -11.12029 -10.81244 -10.64555 -10.43225 -9.80063 -8.04176 -6.23439 -0.63511 1.43641 1.44879 1.54151 1.81691 2.43499 2.91385 3.17249 3.23730 3.35825 3.71817 3.87452 3.88455 4.02782 4.05831 4.16423 4.28701 4.40407 4.46369 4.56552 4.60068 4.68063 4.72562 4.75656 4.82385 4.83003 4.83744 4.90753 4.95900 4.98285 5.04677 5.05153 5.08784 5.28362 5.30771 5.34335 5.40959 5.47195 5.53133 5.62290 5.75972 5.93235 6.08426 6.31853 6.81030 7.02167 7.44901 8.95914 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.003950 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.147585 B = 7087.310674 C = 7501.945283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 H 0.113 0.887 4 C -0.098 4.098 5 C -0.106 4.106 6 H 0.058 0.942 7 C 0.082 3.918 8 O -0.600 6.600 9 C 0.120 3.880 10 N -0.998 5.998 11 S 2.605 3.395 12 O -0.985 6.985 13 O -0.993 6.993 14 C -0.586 4.586 15 C 0.068 3.932 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.518 4.518 19 H 0.063 0.937 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.957 3.043 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.106 3.894 27 H 0.028 0.972 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.081 0.919 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 10.757 -19.903 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.118 4.118 3 H 0.131 0.869 4 C -0.135 4.135 5 C -0.126 4.126 6 H 0.077 0.923 7 C 0.004 3.996 8 O -0.408 6.408 9 C -0.005 4.005 10 N -0.837 5.837 11 S 2.704 3.296 12 O -0.975 6.975 13 O -0.983 6.983 14 C -0.718 4.718 15 C 0.066 3.934 16 C -0.215 4.215 17 C -0.216 4.216 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.183 4.183 21 N -0.548 5.548 22 Si 0.783 3.217 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 C -0.018 4.018 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.437 10.850 -19.143 22.666 hybrid contribution 0.920 -1.036 0.705 1.554 sum 6.357 9.814 -18.438 21.833 Atomic orbital electron populations 1.21931 0.96614 1.00624 1.02053 1.21391 0.95216 1.00662 0.94501 0.86908 1.21488 1.01759 0.92407 0.97856 1.21570 1.00946 0.96403 0.93707 0.92323 1.22264 0.97293 0.83486 0.96523 1.86535 1.73588 1.29692 1.51014 1.21583 1.01091 0.94491 0.83315 1.57587 1.75714 1.19562 1.30815 1.04967 0.76728 0.73540 0.74321 1.93479 1.71958 1.54857 1.77244 1.93491 1.71107 1.58544 1.75152 1.30522 1.17067 1.11817 1.12435 1.17932 0.93825 0.91678 0.89930 1.22183 0.98836 0.98154 1.02357 1.22197 0.98797 1.00310 1.00342 1.21279 0.92516 1.35697 1.06208 0.91906 1.25713 0.97370 0.96155 0.99016 1.69952 1.17011 1.42273 1.25526 0.85574 0.79492 0.77767 0.78908 1.20192 1.21187 1.19122 1.21755 1.01557 0.78555 0.99932 0.95278 0.93385 0.90871 0.89210 0.89638 0.91526 0.91349 0.75420 0.89052 0.91089 0.85119 0.84636 0.95110 0.91042 0.94009 0.94298 0.90961 0.95250 0.92881 0.90088 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.70 71.98 0.63 -2.87 16 2 C -0.10 -1.69 3.20 -10.86 -0.03 -1.72 16 3 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 4 C -0.10 -1.34 4.71 30.62 0.14 -1.19 16 5 C -0.11 -2.14 2.24 -10.71 -0.02 -2.16 16 6 H 0.06 1.52 6.34 -2.39 -0.02 1.51 16 7 C 0.08 1.23 6.43 71.98 0.46 1.69 16 8 O -0.60 -11.86 13.31 -148.98 -1.98 -13.84 16 9 C 0.12 3.00 5.55 86.36 0.48 3.48 16 10 N -1.00 -28.33 2.67 -513.86 -1.37 -29.70 16 11 S 2.61 101.91 4.49 -56.49 -0.25 101.66 16 12 O -0.99 -42.51 14.20 -127.65 -1.81 -44.33 16 13 O -0.99 -45.10 14.21 -127.65 -1.81 -46.91 16 14 C -0.59 -23.48 5.12 71.99 0.37 -23.11 16 15 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 16 C -0.16 -8.09 7.77 71.98 0.56 -7.53 16 17 C -0.16 -8.28 7.77 71.98 0.56 -7.72 16 18 C -0.52 -27.61 8.01 25.60 0.21 -27.41 16 19 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 20 C 0.02 0.90 5.15 84.65 0.44 1.34 16 21 N -0.91 -51.34 9.35 21.45 0.20 -51.14 16 22 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C 0.11 2.33 5.79 86.22 0.50 2.83 16 27 H 0.03 0.82 5.97 -2.39 -0.01 0.80 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.40 3.81 9.12 -74.06 -0.68 3.13 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.21 6.70 -2.39 -0.02 2.19 16 37 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 38 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 39 H 0.03 1.52 5.46 -2.39 -0.01 1.50 16 40 H 0.07 3.99 6.07 -2.38 -0.01 3.97 16 41 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 4.07 6.07 -2.39 -0.01 4.06 16 44 H 0.03 1.48 5.47 -2.39 -0.01 1.46 16 45 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 46 H 0.08 2.03 6.85 -2.39 -0.02 2.01 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -73.44 359.99 -0.47 -73.91 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.28 Total: 26.68 kcal Atomic # 6 Polarization: -65.22 SS G_CDS: 4.25 Total: -60.97 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.17 Total: -80.84 kcal Atomic # 8 Polarization: -99.47 SS G_CDS: -5.61 Total: -105.08 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 101.91 SS G_CDS: -0.25 Total: 101.66 kcal Total: -73.44 -0.47 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420769708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.596 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds