Wall clock time and date at job start Tue Mar 31 2020 13:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99835 * 2 1 4 4 H 1.08996 * 109.46356 * 329.99939 * 3 2 1 5 5 C 1.53042 * 109.46125 * 89.97544 * 3 2 1 6 6 C 1.53190 * 109.31502 * 181.38144 * 5 3 2 7 7 N 1.46925 * 108.77761 * 305.36613 * 6 5 3 8 8 S 1.65599 * 120.62943 * 233.62866 * 7 6 5 9 9 O 1.42095 * 104.27598 * 206.06619 * 8 7 6 10 10 O 1.42104 * 104.27831 * 333.92920 * 8 7 6 11 11 C 1.81406 * 104.45016 * 89.99566 * 8 7 6 12 12 C 1.52992 * 109.47220 * 179.97438 * 11 8 7 13 13 C 1.52997 * 109.47350 * 300.00318 * 12 11 8 14 14 C 1.52999 * 109.47086 * 60.00020 * 12 11 8 15 15 C 1.50701 * 109.47220 * 180.02562 * 12 11 8 16 16 H 1.08000 * 119.99795 * 0.83761 * 15 12 11 17 17 C 1.37883 * 120.00094 * 180.83362 * 15 12 11 18 18 N 1.31513 * 119.99965 * 194.58034 * 17 15 12 19 19 Si 1.86801 * 119.99719 * 14.58554 * 17 15 12 20 20 H 1.48497 * 109.47212 * 84.45133 * 19 17 15 21 21 H 1.48506 * 109.46699 * 204.45225 * 19 17 15 22 22 H 1.48501 * 109.47095 * 324.44815 * 19 17 15 23 23 C 1.46919 * 118.73893 * 53.60561 * 7 6 5 24 24 H 1.08998 * 109.58745 * 186.46809 * 23 7 6 25 25 C 1.52995 * 109.58860 * 66.18010 * 23 7 6 26 26 C 1.53041 * 109.45816 * 210.02461 * 3 2 1 27 27 H 1.08993 * 109.47311 * 60.00067 * 1 2 3 28 28 H 1.09001 * 109.47156 * 299.99680 * 1 2 3 29 29 H 1.09001 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49675 * 301.33640 * 5 3 2 31 31 H 1.09008 * 109.49926 * 61.39872 * 5 3 2 32 32 H 1.08998 * 109.58538 * 65.15054 * 6 5 3 33 33 H 1.08995 * 109.58931 * 185.57283 * 6 5 3 34 34 H 1.08994 * 109.47223 * 300.00540 * 11 8 7 35 35 H 1.09008 * 109.46714 * 59.99737 * 11 8 7 36 36 H 1.09000 * 109.47587 * 70.23038 * 13 12 11 37 37 H 1.09007 * 109.47493 * 190.23304 * 13 12 11 38 38 H 1.09008 * 109.47290 * 310.23431 * 13 12 11 39 39 H 1.09004 * 109.46748 * 60.00242 * 14 12 11 40 40 H 1.08998 * 109.47025 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.47254 * 299.99880 * 14 12 11 42 42 H 0.97000 * 119.99782 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47207 * 60.00214 * 25 23 7 44 44 H 1.09005 * 109.47414 * 179.97438 * 25 23 7 45 45 H 1.08994 * 109.47407 * 299.99863 * 25 23 7 46 46 H 1.09001 * 109.50011 * 298.56834 * 26 3 2 47 47 H 1.08996 * 109.49843 * 58.66637 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3448 1.9992 -0.5138 5 6 2.2170 1.7715 1.4430 6 6 2.8080 3.1848 1.4392 7 7 4.0306 3.1840 0.6243 8 16 5.4580 3.7502 1.2440 9 8 6.1917 4.1740 0.1033 10 8 5.0620 4.6766 2.2462 11 6 6.2349 2.2933 1.9954 12 6 7.5784 2.6915 2.6096 13 6 8.4926 3.2509 1.5178 14 6 7.3525 3.7591 3.6820 15 6 8.2241 1.4810 3.2332 16 1 7.7323 0.5208 3.1835 17 6 9.4428 1.5994 3.8673 18 7 10.1408 0.5230 4.1565 19 14 10.1021 3.2887 4.3156 20 1 9.5302 3.7135 5.6185 21 1 11.5823 3.2306 4.4199 22 1 9.7179 4.2649 3.2645 23 6 3.9627 2.6707 -0.7507 24 1 4.9655 2.6318 -1.1761 25 6 3.0812 3.5901 -1.5984 26 6 3.3589 1.2630 -0.7220 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.2594 1.7790 1.9637 31 1 2.9016 1.0917 1.9503 32 1 2.0859 3.8817 1.0138 33 1 3.0492 3.4828 2.4595 34 1 5.5834 1.8945 2.7729 35 1 6.3962 1.5329 1.2312 36 1 8.1184 4.2216 1.1925 37 1 9.5024 3.3644 1.9122 38 1 8.5084 2.5652 0.6705 39 1 6.7012 3.3605 4.4599 40 1 8.3096 4.0424 4.1199 41 1 6.8857 4.6345 3.2306 42 1 10.9980 0.6063 4.6029 43 1 3.5058 4.5939 -1.6070 44 1 3.0325 3.2079 -2.6181 45 1 2.0777 3.6236 -1.1743 46 1 4.0331 0.5885 -0.1943 47 1 3.2142 0.9087 -1.7426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451508184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:43 Heat of formation + Delta-G solvation = -103.851296 kcal Electronic energy + Delta-G solvation = -27490.335084 eV Core-core repulsion = 23801.211412 eV Total energy + Delta-G solvation = -3689.123672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.66878 -37.17971 -36.79079 -36.70907 -35.47664 -32.35127 -31.95241 -31.58970 -28.05938 -27.32638 -26.55058 -26.38116 -25.01578 -23.77281 -22.81639 -20.39394 -19.42312 -18.40772 -17.79689 -16.78731 -16.19019 -16.04500 -15.72724 -15.36433 -15.26042 -15.08864 -14.69037 -14.22322 -13.81486 -13.49421 -13.41372 -13.33317 -13.11351 -12.89975 -12.68184 -12.45818 -12.29500 -12.14331 -11.91635 -11.67987 -11.55221 -11.53957 -11.39995 -11.26822 -11.07931 -11.00577 -10.96158 -10.76092 -10.41700 -10.17125 -10.06046 -9.98775 -9.72021 -9.18432 -8.93183 -8.71993 -8.46070 -6.18829 -4.16041 0.65735 2.89350 3.25418 3.34606 3.38863 3.49687 4.20968 4.34415 4.39268 4.42649 4.65457 4.78699 4.88097 5.01299 5.04134 5.08375 5.10224 5.11201 5.20749 5.24458 5.36092 5.41270 5.46247 5.50761 5.56298 5.61655 5.74195 5.77453 5.88374 5.98320 5.99933 6.13231 6.18761 6.24480 6.31932 6.43699 6.48457 6.59510 6.72752 6.87133 6.99763 7.13111 7.31253 7.62927 8.39613 8.84363 9.45177 10.93746 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.004302 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.063033 B = 6507.570923 C = 7082.267050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.092 3.908 4 H 0.064 0.936 5 C -0.159 4.159 6 C 0.125 3.875 7 N -1.003 6.003 8 S 2.588 3.412 9 O -0.960 6.960 10 O -0.962 6.962 11 C -0.574 4.574 12 C 0.054 3.946 13 C -0.170 4.170 14 C -0.181 4.181 15 C -0.507 4.507 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.889 5.889 19 Si 0.873 3.127 20 H -0.281 1.281 21 H -0.301 1.301 22 H -0.246 1.246 23 C 0.150 3.850 24 H 0.106 0.894 25 C -0.162 4.162 26 C -0.128 4.128 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.266 0.734 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.877 2.814 -9.736 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.034 3.966 4 H 0.082 0.918 5 C -0.199 4.199 6 C -0.001 4.001 7 N -0.839 5.839 8 S 2.688 3.312 9 O -0.950 6.950 10 O -0.953 6.953 11 C -0.707 4.707 12 C 0.051 3.949 13 C -0.227 4.227 14 C -0.238 4.238 15 C -0.546 4.546 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.525 5.525 19 Si 0.705 3.295 20 H -0.208 1.208 21 H -0.229 1.229 22 H -0.172 1.172 23 C 0.044 3.956 24 H 0.124 0.876 25 C -0.221 4.221 26 C -0.167 4.167 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.332 3.492 -9.728 21.045 hybrid contribution 0.133 0.232 0.656 0.708 sum -18.200 3.723 -9.073 20.674 Atomic orbital electron populations 1.22765 0.81408 1.02608 0.99775 1.87942 1.19346 1.27988 1.95039 1.22104 0.94840 0.84306 0.95348 0.91815 1.22477 1.02132 0.97580 0.97685 1.21306 0.86642 0.96106 0.96056 1.58098 1.24393 1.80544 1.20880 1.05814 0.72938 0.77817 0.74665 1.93546 1.71118 1.80571 1.49766 1.93535 1.81157 1.59773 1.60805 1.30427 1.10031 1.18209 1.12032 1.18235 0.88224 0.96060 0.92375 1.22675 1.01949 0.98873 0.99210 1.22814 1.01368 0.98531 1.01057 1.20651 1.04212 0.93468 1.36240 0.90390 1.24963 0.95924 0.96458 0.95233 1.69937 1.13064 1.28638 1.40865 0.87454 0.76434 0.85946 0.79693 1.20817 1.22897 1.17211 1.20927 1.01308 0.92053 0.81327 0.87595 1.22156 1.00010 1.00408 0.99486 1.22032 0.96001 0.97104 1.01579 0.94229 0.94121 0.89779 0.90756 0.90083 0.91278 0.88627 0.85775 0.85631 0.94496 0.91465 0.92350 0.91817 0.93014 0.93298 0.92426 0.91769 0.91407 0.92302 0.90069 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -4.12 10.35 -35.23 -0.36 -4.49 16 3 C 0.09 0.89 2.37 -26.69 -0.06 0.83 16 4 H 0.06 0.53 6.13 -51.93 -0.32 0.22 16 5 C -0.16 -1.58 5.69 -26.61 -0.15 -1.73 16 6 C 0.12 1.37 5.90 -3.71 -0.02 1.35 16 7 N -1.00 -13.09 2.93 -106.48 -0.31 -13.40 16 8 S 2.59 44.56 4.45 -107.50 -0.48 44.08 16 9 O -0.96 -18.40 14.57 -57.54 -0.84 -19.24 16 10 O -0.96 -18.47 14.35 -57.54 -0.83 -19.29 16 11 C -0.57 -10.58 5.10 37.15 0.19 -10.39 16 12 C 0.05 1.24 0.52 -155.67 -0.08 1.16 16 13 C -0.17 -3.83 6.95 37.16 0.26 -3.57 16 14 C -0.18 -4.08 7.22 37.16 0.27 -3.81 16 15 C -0.51 -13.67 8.62 -34.44 -0.30 -13.97 16 16 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.08 2.18 5.31 -17.82 -0.09 2.08 16 18 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 19 Si 0.87 21.59 22.79 -169.99 -3.87 17.72 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.25 -5.71 4.67 56.52 0.26 -5.45 16 23 C 0.15 1.69 3.09 -67.60 -0.21 1.48 16 24 H 0.11 1.26 7.09 -51.93 -0.37 0.89 16 25 C -0.16 -1.53 9.03 37.16 0.34 -1.20 16 26 C -0.13 -1.31 5.20 -26.61 -0.14 -1.44 16 27 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 28 H 0.04 0.27 7.84 -51.93 -0.41 -0.14 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 31 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.65 7.50 -51.93 -0.39 0.26 16 33 H 0.10 1.09 7.10 -51.93 -0.37 0.72 16 34 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 35 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 36 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16 37 H 0.07 1.56 4.32 -51.92 -0.22 1.34 16 38 H 0.06 1.24 8.11 -51.92 -0.42 0.81 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 1.20 2.28 -51.93 -0.12 1.09 16 41 H 0.05 1.03 5.46 -51.93 -0.28 0.75 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.49 5.72 -51.93 -0.30 0.19 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -32.94 351.35 -7.38 -40.32 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.84 Total: 2.63 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 1.09 Total: -27.89 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.46 Total: -39.14 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.03 Total: -43.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -3.87 Total: 17.72 kcal Atomic # 16 Polarization: 44.56 SS G_CDS: -0.48 Total: 44.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.94 -7.38 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451508184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.533 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds