Wall clock time and date at job start Tue Mar 31 2020 13:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99835 * 2 1 4 4 H 1.08996 * 109.46356 * 329.99939 * 3 2 1 5 5 C 1.53042 * 109.46125 * 89.97544 * 3 2 1 6 6 C 1.53190 * 109.31502 * 181.38144 * 5 3 2 7 7 N 1.46925 * 108.77761 * 305.36613 * 6 5 3 8 8 S 1.65599 * 120.62943 * 233.62866 * 7 6 5 9 9 O 1.42095 * 104.27598 * 206.06619 * 8 7 6 10 10 O 1.42104 * 104.27831 * 333.92920 * 8 7 6 11 11 C 1.81406 * 104.45016 * 89.99566 * 8 7 6 12 12 C 1.52992 * 109.47220 * 179.97438 * 11 8 7 13 13 C 1.52997 * 109.47350 * 300.00318 * 12 11 8 14 14 C 1.52999 * 109.47086 * 60.00020 * 12 11 8 15 15 C 1.50701 * 109.47220 * 180.02562 * 12 11 8 16 16 H 1.08000 * 119.99795 * 0.83761 * 15 12 11 17 17 C 1.37883 * 120.00094 * 180.83362 * 15 12 11 18 18 N 1.31513 * 119.99965 * 194.58034 * 17 15 12 19 19 Si 1.86801 * 119.99719 * 14.58554 * 17 15 12 20 20 H 1.48497 * 109.47212 * 84.45133 * 19 17 15 21 21 H 1.48506 * 109.46699 * 204.45225 * 19 17 15 22 22 H 1.48501 * 109.47095 * 324.44815 * 19 17 15 23 23 C 1.46919 * 118.73893 * 53.60561 * 7 6 5 24 24 H 1.08998 * 109.58745 * 186.46809 * 23 7 6 25 25 C 1.52995 * 109.58860 * 66.18010 * 23 7 6 26 26 C 1.53041 * 109.45816 * 210.02461 * 3 2 1 27 27 H 1.08993 * 109.47311 * 60.00067 * 1 2 3 28 28 H 1.09001 * 109.47156 * 299.99680 * 1 2 3 29 29 H 1.09001 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49675 * 301.33640 * 5 3 2 31 31 H 1.09008 * 109.49926 * 61.39872 * 5 3 2 32 32 H 1.08998 * 109.58538 * 65.15054 * 6 5 3 33 33 H 1.08995 * 109.58931 * 185.57283 * 6 5 3 34 34 H 1.08994 * 109.47223 * 300.00540 * 11 8 7 35 35 H 1.09008 * 109.46714 * 59.99737 * 11 8 7 36 36 H 1.09000 * 109.47587 * 70.23038 * 13 12 11 37 37 H 1.09007 * 109.47493 * 190.23304 * 13 12 11 38 38 H 1.09008 * 109.47290 * 310.23431 * 13 12 11 39 39 H 1.09004 * 109.46748 * 60.00242 * 14 12 11 40 40 H 1.08998 * 109.47025 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.47254 * 299.99880 * 14 12 11 42 42 H 0.97000 * 119.99782 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.47207 * 60.00214 * 25 23 7 44 44 H 1.09005 * 109.47414 * 179.97438 * 25 23 7 45 45 H 1.08994 * 109.47407 * 299.99863 * 25 23 7 46 46 H 1.09001 * 109.50011 * 298.56834 * 26 3 2 47 47 H 1.08996 * 109.49843 * 58.66637 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3448 1.9992 -0.5138 5 6 2.2170 1.7715 1.4430 6 6 2.8080 3.1848 1.4392 7 7 4.0306 3.1840 0.6243 8 16 5.4580 3.7502 1.2440 9 8 6.1917 4.1740 0.1033 10 8 5.0620 4.6766 2.2462 11 6 6.2349 2.2933 1.9954 12 6 7.5784 2.6915 2.6096 13 6 8.4926 3.2509 1.5178 14 6 7.3525 3.7591 3.6820 15 6 8.2241 1.4810 3.2332 16 1 7.7323 0.5208 3.1835 17 6 9.4428 1.5994 3.8673 18 7 10.1408 0.5230 4.1565 19 14 10.1021 3.2887 4.3156 20 1 9.5302 3.7135 5.6185 21 1 11.5823 3.2306 4.4199 22 1 9.7179 4.2649 3.2645 23 6 3.9627 2.6707 -0.7507 24 1 4.9655 2.6318 -1.1761 25 6 3.0812 3.5901 -1.5984 26 6 3.3589 1.2630 -0.7220 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.2594 1.7790 1.9637 31 1 2.9016 1.0917 1.9503 32 1 2.0859 3.8817 1.0138 33 1 3.0492 3.4828 2.4595 34 1 5.5834 1.8945 2.7729 35 1 6.3962 1.5329 1.2312 36 1 8.1184 4.2216 1.1925 37 1 9.5024 3.3644 1.9122 38 1 8.5084 2.5652 0.6705 39 1 6.7012 3.3605 4.4599 40 1 8.3096 4.0424 4.1199 41 1 6.8857 4.6345 3.2306 42 1 10.9980 0.6063 4.6029 43 1 3.5058 4.5939 -1.6070 44 1 3.0325 3.2079 -2.6181 45 1 2.0777 3.6236 -1.1743 46 1 4.0331 0.5885 -0.1943 47 1 3.2142 0.9087 -1.7426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451508184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:42 Heat of formation + Delta-G solvation = -127.803444 kcal Electronic energy + Delta-G solvation = -27491.373727 eV Core-core repulsion = 23801.211412 eV Total energy + Delta-G solvation = -3690.162315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.47890 -38.52656 -38.24403 -37.93827 -36.94289 -34.06130 -33.19508 -32.46182 -29.15890 -28.57297 -28.17214 -27.17146 -27.10462 -24.62167 -23.62930 -21.76109 -20.91266 -19.50020 -19.01525 -18.17916 -17.63673 -17.31650 -17.16112 -16.89391 -16.10335 -16.00463 -15.76937 -15.13795 -15.04361 -15.01001 -14.81809 -14.66626 -14.28624 -14.25449 -14.16788 -13.92172 -13.53287 -13.23508 -13.09791 -12.99340 -12.78936 -12.71576 -12.61475 -12.55741 -12.46106 -12.22824 -12.05852 -12.01128 -11.89381 -11.87718 -11.70084 -11.19306 -10.96975 -10.70136 -10.52250 -10.42338 -9.98196 -8.36186 -6.35822 -0.71005 1.28911 1.33479 1.41839 1.68894 2.28191 2.76996 2.86732 2.98018 3.15459 3.52405 3.74347 3.82460 3.98825 4.04105 4.08290 4.21924 4.23920 4.26112 4.43270 4.45668 4.48233 4.56598 4.57302 4.59681 4.66665 4.66840 4.73737 4.76382 4.81601 4.91934 4.93274 4.98372 5.02771 5.11467 5.12717 5.22158 5.32273 5.35767 5.44128 5.50952 5.61409 5.68227 6.25158 6.35121 6.66809 7.28407 8.79885 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.004302 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.063033 B = 6507.570923 C = 7082.267050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.092 3.908 4 H 0.085 0.915 5 C -0.157 4.157 6 C 0.117 3.883 7 N -0.995 5.995 8 S 2.612 3.388 9 O -0.979 6.979 10 O -0.980 6.980 11 C -0.585 4.585 12 C 0.044 3.956 13 C -0.173 4.173 14 C -0.185 4.185 15 C -0.504 4.504 16 H 0.046 0.954 17 C 0.026 3.974 18 N -0.936 5.936 19 Si 0.917 3.083 20 H -0.275 1.275 21 H -0.304 1.304 22 H -0.221 1.221 23 C 0.143 3.857 24 H 0.096 0.904 25 C -0.160 4.160 26 C -0.127 4.127 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.266 0.734 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.334 4.315 -10.945 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.034 3.966 4 H 0.103 0.897 5 C -0.197 4.197 6 C -0.007 4.007 7 N -0.834 5.834 8 S 2.709 3.291 9 O -0.969 6.969 10 O -0.970 6.970 11 C -0.716 4.716 12 C 0.042 3.958 13 C -0.231 4.231 14 C -0.242 4.242 15 C -0.543 4.543 16 H 0.065 0.935 17 C -0.172 4.172 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.201 1.201 21 H -0.233 1.233 22 H -0.146 1.146 23 C 0.037 3.963 24 H 0.114 0.886 25 C -0.218 4.218 26 C -0.166 4.166 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.794 4.993 -10.933 24.018 hybrid contribution 0.753 -0.346 0.967 1.273 sum -20.042 4.647 -9.967 22.860 Atomic orbital electron populations 1.22956 0.79810 1.03528 1.00901 1.87912 1.21204 1.28517 1.95162 1.22123 0.94785 0.84559 0.95085 0.89745 1.22462 1.02590 0.96395 0.98203 1.21565 0.86022 0.97431 0.95715 1.57821 1.23439 1.80378 1.21750 1.04873 0.73391 0.76909 0.73906 1.93517 1.72483 1.80753 1.50139 1.93504 1.81582 1.60214 1.61712 1.30473 1.08347 1.20062 1.12749 1.18216 0.90319 0.94550 0.92736 1.22675 1.01292 0.99829 0.99262 1.22831 1.01279 0.98949 1.01140 1.20913 1.03915 0.93961 1.35472 0.93532 1.25681 0.96515 0.99572 0.95474 1.70058 1.13828 1.30831 1.42752 0.86705 0.75576 0.82752 0.80326 1.20142 1.23273 1.14580 1.21153 1.01613 0.93174 0.80341 0.88553 1.22163 1.00127 0.99190 1.00346 1.22012 0.96153 0.95964 1.02483 0.92802 0.93224 0.89133 0.88768 0.91816 0.88801 0.89147 0.84781 0.84923 0.93074 0.92466 0.91791 0.91200 0.93729 0.91788 0.92448 0.92947 0.89325 0.90710 0.91740 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.41 -7.84 10.35 -148.98 -1.54 -9.38 16 3 C 0.09 1.54 2.37 30.62 0.07 1.61 16 4 H 0.08 1.06 6.13 -2.39 -0.01 1.05 16 5 C -0.16 -2.75 5.69 30.67 0.17 -2.57 16 6 C 0.12 2.28 5.90 86.36 0.51 2.79 16 7 N -1.00 -24.03 2.93 -490.80 -1.44 -25.47 16 8 S 2.61 86.07 4.45 -56.49 -0.25 85.82 16 9 O -0.98 -36.08 14.57 -127.65 -1.86 -37.94 16 10 O -0.98 -35.79 14.35 -127.65 -1.83 -37.62 16 11 C -0.59 -21.33 5.10 71.98 0.37 -20.96 16 12 C 0.04 2.01 0.52 -52.93 -0.03 1.98 16 13 C -0.17 -7.65 6.95 71.98 0.50 -7.15 16 14 C -0.19 -8.10 7.22 71.98 0.52 -7.58 16 15 C -0.50 -27.68 8.62 25.60 0.22 -27.46 16 16 H 0.05 2.78 7.99 -2.91 -0.02 2.75 16 17 C 0.03 1.51 5.31 84.66 0.45 1.95 16 18 N -0.94 -57.49 13.96 21.45 0.30 -57.20 16 19 Si 0.92 44.32 22.79 68.60 1.56 45.89 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.22 -9.76 4.67 99.48 0.46 -9.30 16 23 C 0.14 2.92 3.09 44.98 0.14 3.06 16 24 H 0.10 2.16 7.09 -2.39 -0.02 2.14 16 25 C -0.16 -2.51 9.03 71.98 0.65 -1.86 16 26 C -0.13 -2.34 5.20 30.68 0.16 -2.18 16 27 H 0.05 0.50 8.08 -2.39 -0.02 0.48 16 28 H 0.05 0.51 7.84 -2.39 -0.02 0.49 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.28 7.84 -2.38 -0.02 1.26 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.09 1.41 7.50 -2.39 -0.02 1.39 16 33 H 0.09 1.88 7.10 -2.39 -0.02 1.86 16 34 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 35 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 36 H 0.05 2.09 6.21 -2.39 -0.01 2.08 16 37 H 0.06 2.60 4.32 -2.38 -0.01 2.59 16 38 H 0.06 2.68 8.11 -2.38 -0.02 2.66 16 39 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 40 H 0.04 2.00 2.28 -2.39 -0.01 1.99 16 41 H 0.06 2.59 5.46 -2.39 -0.01 2.58 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.07 0.93 5.72 -2.39 -0.01 0.92 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -71.07 351.35 0.61 -70.45 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.71 Total: 22.31 kcal Atomic # 6 Polarization: -61.82 SS G_CDS: 4.96 Total: -56.86 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.14 Total: -82.67 kcal Atomic # 8 Polarization: -79.71 SS G_CDS: -5.23 Total: -84.94 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.56 Total: 45.89 kcal Atomic # 16 Polarization: 86.07 SS G_CDS: -0.25 Total: 85.82 kcal Total: -71.07 0.61 -70.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451508184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.349 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds