Wall clock time and date at job start Tue Mar 31 2020 13:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99473 * 2 1 4 4 H 1.09001 * 109.46478 * 329.97447 * 3 2 1 5 5 C 1.53041 * 109.44783 * 89.94140 * 3 2 1 6 6 C 1.53197 * 109.31233 * 181.37504 * 5 3 2 7 7 N 1.46921 * 108.77610 * 305.36182 * 6 5 3 8 8 S 1.65596 * 120.63548 * 233.58718 * 7 6 5 9 9 O 1.42103 * 104.27908 * 213.61506 * 8 7 6 10 10 O 1.42102 * 104.27307 * 341.46592 * 8 7 6 11 11 C 1.81392 * 104.45165 * 97.53792 * 8 7 6 12 12 C 1.52997 * 109.47315 * 180.02562 * 11 8 7 13 13 C 1.52999 * 109.46923 * 300.00048 * 12 11 8 14 14 C 1.52999 * 109.47155 * 60.00405 * 12 11 8 15 15 C 1.50700 * 109.47137 * 180.02562 * 12 11 8 16 16 H 1.07993 * 120.00272 * 0.02562 * 15 12 11 17 17 C 1.37884 * 120.00057 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99629 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00188 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47113 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46945 * 120.00011 * 19 17 15 22 22 H 1.48498 * 109.47094 * 240.00601 * 19 17 15 23 23 C 1.46930 * 118.73659 * 53.61168 * 7 6 5 24 24 H 1.09000 * 109.59109 * 66.17355 * 23 7 6 25 25 C 1.53004 * 109.58776 * 186.60427 * 23 7 6 26 26 C 1.53046 * 109.45770 * 209.99946 * 3 2 1 27 27 H 1.09000 * 109.47075 * 299.99499 * 1 2 3 28 28 H 1.08996 * 109.47273 * 60.00012 * 1 2 3 29 29 H 1.08998 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.50060 * 301.32470 * 5 3 2 31 31 H 1.09001 * 109.50232 * 61.42424 * 5 3 2 32 32 H 1.09001 * 109.58313 * 65.15150 * 6 5 3 33 33 H 1.08996 * 109.58729 * 185.43252 * 6 5 3 34 34 H 1.08998 * 109.47362 * 300.00604 * 11 8 7 35 35 H 1.08998 * 109.47261 * 60.00362 * 11 8 7 36 36 H 1.09000 * 109.47415 * 60.00536 * 13 12 11 37 37 H 1.09004 * 109.47003 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.47116 * 299.99666 * 13 12 11 39 39 H 1.08996 * 109.47634 * 60.00001 * 14 12 11 40 40 H 1.09004 * 109.47391 * 180.02562 * 14 12 11 41 41 H 1.09009 * 109.46833 * 299.99485 * 14 12 11 42 42 H 0.97001 * 119.99733 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.47471 * 164.68569 * 25 23 7 44 44 H 1.08999 * 109.46842 * 284.68767 * 25 23 7 45 45 H 1.09000 * 109.46895 * 44.68656 * 25 23 7 46 46 H 1.08998 * 109.49458 * 298.57823 * 26 3 2 47 47 H 1.08998 * 109.49716 * 58.67801 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9992 -0.5143 5 6 2.2160 1.7716 1.4431 6 6 2.8072 3.1850 1.4396 7 7 4.0303 3.1840 0.6256 8 16 5.4571 3.7511 1.2458 9 8 6.1156 4.3369 0.1310 10 8 5.0655 4.5385 2.3620 11 6 6.3360 2.2621 1.7940 12 6 7.6863 2.6588 2.3943 13 6 8.5213 3.3836 1.3368 14 6 7.4601 3.5866 3.5897 15 6 8.4167 1.4217 2.8492 16 1 7.9635 0.4497 2.7225 17 6 9.6642 1.5306 3.4263 18 7 10.2164 2.7143 3.5802 19 14 10.5694 -0.0028 3.9909 20 1 9.7385 -1.2005 3.7076 21 1 11.8592 -0.1123 3.2632 22 1 10.8301 0.0854 5.4501 23 6 3.9632 2.6706 -0.7495 24 1 3.3357 3.3256 -1.3539 25 6 5.3716 2.6125 -1.3446 26 6 3.3592 1.2631 -0.7215 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.2581 1.7793 1.9632 31 1 2.9007 1.0922 1.9508 32 1 2.0853 3.8818 1.0137 33 1 3.0453 3.4840 2.4603 34 1 5.7413 1.7459 2.5477 35 1 6.4968 1.6009 0.9426 36 1 7.9932 4.2784 1.0074 37 1 9.4831 3.6666 1.7646 38 1 8.6824 2.7225 0.4853 39 1 6.8653 3.0703 4.3430 40 1 8.4221 3.8697 4.0171 41 1 6.9320 4.4815 3.2602 42 1 11.0938 2.7910 3.9865 43 1 5.3624 1.9913 -2.2401 44 1 5.6981 3.6195 -1.6042 45 1 6.0577 2.1854 -0.6131 46 1 4.0331 0.5885 -0.1934 47 1 3.2149 0.9087 -1.7421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451508188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:48 Heat of formation + Delta-G solvation = -112.855146 kcal Electronic energy + Delta-G solvation = -27617.778082 eV Core-core repulsion = 23928.263974 eV Total energy + Delta-G solvation = -3689.514108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.47664 -37.24803 -36.69262 -36.28330 -35.27847 -32.53132 -31.69291 -31.51776 -27.53691 -26.83943 -26.37546 -25.71342 -25.21885 -23.76535 -22.13177 -20.71454 -19.30800 -18.44557 -17.08969 -16.65474 -16.30482 -15.97647 -15.51351 -15.45609 -15.19963 -14.73877 -14.51486 -14.39759 -13.65859 -13.33255 -13.28330 -13.13008 -12.75797 -12.52788 -12.50551 -12.29697 -11.99276 -11.77272 -11.73394 -11.39752 -11.26724 -11.14000 -11.07490 -11.03126 -10.87584 -10.79596 -10.67602 -10.34395 -10.31611 -10.15175 -10.03313 -9.69245 -9.63375 -9.57257 -8.93146 -8.61539 -8.39820 -6.02978 -4.14671 0.84734 3.06026 3.25445 3.33956 3.36970 3.51336 4.33538 4.41052 4.46205 4.57520 4.73700 4.81498 4.96053 5.05671 5.10307 5.12502 5.20289 5.22295 5.24354 5.33265 5.43007 5.53217 5.61927 5.64544 5.72453 5.77162 5.79618 5.93556 6.05176 6.16614 6.20273 6.42067 6.60979 6.72310 6.74224 6.80153 6.91193 7.01369 7.04529 7.31999 7.50749 7.68655 7.98282 8.10350 8.33756 8.84193 9.50819 10.98338 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.004405 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.209720 B = 6354.503252 C = 7031.165719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.092 3.908 4 H 0.061 0.939 5 C -0.158 4.158 6 C 0.123 3.877 7 N -1.007 6.007 8 S 2.594 3.406 9 O -0.958 6.958 10 O -0.966 6.966 11 C -0.585 4.585 12 C 0.082 3.918 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.500 4.500 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.895 3.105 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.161 3.839 24 H 0.076 0.924 25 C -0.194 4.194 26 C -0.130 4.130 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.028 0.972 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 -1.952 -8.106 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.035 3.965 4 H 0.079 0.921 5 C -0.198 4.198 6 C -0.003 4.003 7 N -0.844 5.844 8 S 2.695 3.305 9 O -0.949 6.949 10 O -0.957 6.957 11 C -0.718 4.718 12 C 0.080 3.920 13 C -0.220 4.220 14 C -0.221 4.221 15 C -0.540 4.540 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.055 3.945 24 H 0.094 0.906 25 C -0.252 4.252 26 C -0.169 4.169 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.724 -1.078 -8.012 18.576 hybrid contribution 0.192 -1.503 0.490 1.592 sum -16.533 -2.581 -7.522 18.346 Atomic orbital electron populations 1.22767 0.81418 1.02565 0.99819 1.87940 1.19352 1.28018 1.95056 1.22084 0.94785 0.84237 0.95434 0.92109 1.22469 1.02038 0.97699 0.97577 1.21316 0.86451 0.95951 0.96586 1.58181 1.24586 1.80568 1.21022 1.05696 0.72965 0.77953 0.73933 1.93550 1.74273 1.76178 1.50854 1.93509 1.81295 1.67152 1.53699 1.30701 1.12137 1.18226 1.10739 1.17930 0.85886 0.96052 0.92148 1.22267 1.04278 0.97688 0.97808 1.22270 1.03328 0.97088 0.99410 1.20985 1.01574 0.91698 1.39705 0.92288 1.24938 0.97229 0.96066 0.95506 1.69815 1.16433 1.22030 1.43928 0.86492 0.79685 0.83164 0.78397 1.19834 1.20944 1.20952 1.20859 0.98237 0.93403 0.81976 0.90590 1.22813 0.93980 1.06306 1.02080 1.22132 0.95678 0.97733 1.01375 0.94100 0.94201 0.89813 0.90775 0.90235 0.91472 0.88285 0.86560 0.86244 0.95329 0.88699 0.94492 0.94545 0.88650 0.95443 0.92824 0.90949 0.87233 0.91913 0.90158 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.30 10.35 -35.23 -0.36 -4.66 16 3 C 0.09 0.96 2.57 -26.69 -0.07 0.89 16 4 H 0.06 0.55 7.79 -51.93 -0.40 0.14 16 5 C -0.16 -1.70 5.69 -26.61 -0.15 -1.85 16 6 C 0.12 1.49 6.35 -3.71 -0.02 1.47 16 7 N -1.01 -14.39 3.22 -106.47 -0.34 -14.73 16 8 S 2.59 48.33 3.83 -107.50 -0.41 47.92 16 9 O -0.96 -19.22 11.52 -57.54 -0.66 -19.88 16 10 O -0.97 -20.29 14.11 -57.54 -0.81 -21.10 16 11 C -0.58 -11.56 4.81 37.16 0.18 -11.38 16 12 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 13 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 14 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 15 C -0.50 -13.17 8.01 -34.44 -0.28 -13.44 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 18 N -0.88 -24.15 9.35 55.43 0.52 -23.63 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.16 1.97 3.46 -67.59 -0.23 1.74 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 C -0.19 -2.59 7.71 37.16 0.29 -2.30 16 26 C -0.13 -1.43 4.97 -26.61 -0.13 -1.56 16 27 H 0.04 0.28 7.84 -51.93 -0.41 -0.12 16 28 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.28 6.89 -51.93 -0.36 0.92 16 34 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 35 H 0.12 2.16 6.13 -51.92 -0.32 1.85 16 36 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 41 H 0.03 0.64 5.46 -51.92 -0.28 0.36 16 42 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 44 H 0.11 1.64 6.21 -51.93 -0.32 1.31 16 45 H 0.06 0.93 4.52 -51.93 -0.23 0.69 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -30.96 354.60 -8.51 -39.47 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.83 Total: 4.58 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 1.08 Total: -29.01 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.18 Total: -38.36 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.84 Total: -45.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 48.33 SS G_CDS: -0.41 Total: 47.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.96 -8.51 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451508188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.383 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds