Wall clock time and date at job start Tue Mar 31 2020 13:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58749 * 2 1 4 4 C 1.53190 * 109.58850 * 120.28714 * 2 1 3 5 5 C 1.53039 * 109.31184 * 174.42041 * 4 2 1 6 6 H 1.08996 * 109.46045 * 58.65557 * 5 4 2 7 7 C 1.52999 * 109.45711 * 178.61447 * 5 4 2 8 8 O 1.42906 * 109.47009 * 185.06886 * 7 5 4 9 9 C 1.53038 * 109.53783 * 298.63456 * 5 4 2 10 10 C 1.53188 * 109.31354 * 61.36631 * 9 5 4 11 11 N 1.46925 * 108.89496 * 305.29267 * 10 9 5 12 12 S 1.65598 * 120.63420 * 233.68571 * 11 10 9 13 13 O 1.42099 * 104.27791 * 214.10969 * 12 11 10 14 14 O 1.42101 * 104.27427 * 341.96117 * 12 11 10 15 15 C 1.81400 * 104.45467 * 98.03522 * 12 11 10 16 16 C 1.52994 * 109.47160 * 180.02562 * 15 12 11 17 17 C 1.52991 * 109.47447 * 300.00076 * 16 15 12 18 18 C 1.53002 * 109.47307 * 60.00420 * 16 15 12 19 19 C 1.50704 * 109.46951 * 180.02562 * 16 15 12 20 20 H 1.07999 * 119.99720 * 359.97438 * 19 16 15 21 21 C 1.37873 * 119.99938 * 180.02562 * 19 16 15 22 22 N 1.31518 * 120.00188 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99914 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47313 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47418 * 119.99434 * 23 21 19 26 26 H 1.48505 * 109.46786 * 239.99295 * 23 21 19 27 27 H 1.09002 * 109.46610 * 287.16483 * 1 2 3 28 28 H 1.08999 * 109.47540 * 47.16175 * 1 2 3 29 29 H 1.08993 * 109.47252 * 167.16926 * 1 2 3 30 30 H 1.09003 * 109.49567 * 54.46616 * 4 2 1 31 31 H 1.08998 * 109.52518 * 294.38921 * 4 2 1 32 32 H 1.08997 * 109.47380 * 305.06099 * 7 5 4 33 33 H 1.08995 * 109.47274 * 65.07276 * 7 5 4 34 34 H 0.96690 * 114.00384 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.50055 * 301.41312 * 9 5 4 36 36 H 1.08999 * 109.52431 * 181.33519 * 9 5 4 37 37 H 1.08998 * 109.58936 * 65.15161 * 10 9 5 38 38 H 1.09003 * 109.58850 * 185.43537 * 10 9 5 39 39 H 1.09001 * 109.46830 * 300.00007 * 15 12 11 40 40 H 1.09000 * 109.46733 * 59.99932 * 15 12 11 41 41 H 1.09001 * 109.47598 * 59.99823 * 17 16 15 42 42 H 1.09006 * 109.47469 * 180.02562 * 17 16 15 43 43 H 1.09005 * 109.46810 * 300.00016 * 17 16 15 44 44 H 1.08996 * 109.47186 * 59.99283 * 18 16 15 45 45 H 1.08995 * 109.47287 * 179.97438 * 18 16 15 46 46 H 1.08999 * 109.46837 * 299.99927 * 18 16 15 47 47 H 0.97000 * 119.99937 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5675 -0.8466 1.1710 6 1 4.0061 0.1486 1.0990 7 6 4.0873 -1.5425 2.4306 8 8 5.5163 -1.5482 2.4163 9 6 3.9568 -1.6658 -0.0616 10 6 3.4650 -0.9486 -1.3227 11 7 2.0221 -0.7012 -1.1972 12 16 0.9740 -1.2045 -2.3763 13 8 -0.0374 -0.2065 -2.3954 14 8 1.8025 -1.4295 -3.5087 15 6 0.3094 -2.7726 -1.7521 16 6 -0.6836 -3.3451 -2.7655 17 6 -1.8291 -2.3526 -2.9738 18 6 0.0296 -3.5877 -4.0973 19 6 -1.2362 -4.6476 -2.2466 20 1 -0.9113 -5.0290 -1.2899 21 6 -2.1558 -5.3527 -2.9937 22 7 -2.5510 -4.8885 -4.1590 23 14 -2.8413 -6.9668 -2.3501 24 1 -2.2409 -7.2665 -1.0254 25 1 -4.3160 -6.8586 -2.2126 26 1 -2.5116 -8.0588 -3.3011 27 1 -0.3632 0.3033 0.9819 28 1 -0.3634 0.6987 -0.7535 29 1 -0.3633 -1.0019 -0.2282 30 1 1.6029 -1.7238 1.2934 31 1 1.7661 -0.1648 2.1373 32 1 3.7351 -1.0078 3.3127 33 1 3.7201 -2.5684 2.4566 34 1 5.9156 -1.9750 3.1865 35 1 3.4983 -2.6528 -0.0022 36 1 5.0411 -1.7703 -0.1020 37 1 3.9902 0.0003 -1.4318 38 1 3.6540 -1.5733 -2.1957 39 1 1.1255 -3.4799 -1.6042 40 1 -0.1983 -2.5999 -0.8031 41 1 -1.4298 -1.4103 -3.3489 42 1 -2.5368 -2.7607 -3.6955 43 1 -2.3372 -2.1799 -2.0250 44 1 0.8457 -4.2947 -3.9489 45 1 -0.6777 -3.9959 -4.8191 46 1 0.4289 -2.6454 -4.4724 47 1 -3.1983 -5.3844 -4.6844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451552995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:40 Heat of formation + Delta-G solvation = -147.381909 kcal Electronic energy + Delta-G solvation = -27578.892207 eV Core-core repulsion = 23887.880906 eV Total energy + Delta-G solvation = -3691.011301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13144 -38.35775 -38.14521 -37.52169 -36.84811 -33.98743 -33.68887 -33.24030 -28.52537 -28.47506 -27.70734 -27.25451 -26.91125 -23.98972 -22.67890 -21.36969 -20.93585 -19.76861 -18.45924 -18.10567 -17.85633 -17.48828 -16.93728 -16.65719 -15.94359 -15.75501 -15.60680 -15.23077 -15.11685 -14.86199 -14.76635 -14.44442 -13.99882 -13.92791 -13.65655 -13.49244 -13.35645 -13.14555 -12.91229 -12.82412 -12.77169 -12.68996 -12.46284 -12.21412 -12.18176 -12.12032 -11.92535 -11.83107 -11.66621 -11.52282 -11.48388 -11.41681 -11.09560 -10.75734 -10.58827 -10.42757 -9.87103 -8.03689 -6.22416 -0.60579 1.42034 1.44932 1.54482 1.80001 2.43421 2.90549 3.18158 3.25991 3.35424 3.54475 3.80811 3.97729 4.02549 4.08396 4.21168 4.22670 4.33355 4.38287 4.54289 4.58707 4.66186 4.69392 4.78529 4.81689 4.85116 4.86316 4.89204 4.92185 4.97812 5.04490 5.06894 5.20493 5.23520 5.28345 5.38427 5.49254 5.51268 5.58085 5.63822 5.77628 5.95834 6.10490 6.33412 6.82202 6.98169 7.45910 8.96368 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.004432 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.149877 B = 6315.480747 C = 7019.302161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.154 3.846 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.084 4.084 6 H 0.080 0.920 7 C 0.081 3.919 8 O -0.592 6.592 9 C -0.123 4.123 10 C 0.112 3.888 11 N -0.999 5.999 12 S 2.609 3.391 13 O -0.978 6.978 14 O -0.996 6.996 15 C -0.588 4.588 16 C 0.070 3.930 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.515 4.515 20 H 0.061 0.939 21 C 0.018 3.982 22 N -0.908 5.908 23 Si 0.954 3.046 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.284 1.284 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.030 0.970 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 8.011 15.421 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.049 3.951 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.103 4.103 6 H 0.098 0.902 7 C 0.004 3.996 8 O -0.400 6.400 9 C -0.162 4.162 10 C -0.013 4.013 11 N -0.838 5.838 12 S 2.708 3.292 13 O -0.968 6.968 14 O -0.987 6.987 15 C -0.719 4.719 16 C 0.068 3.932 17 C -0.214 4.214 18 C -0.217 4.217 19 C -0.554 4.554 20 H 0.079 0.921 21 C -0.181 4.181 22 N -0.547 5.547 23 Si 0.780 3.220 24 H -0.190 1.190 25 H -0.208 1.208 26 H -0.210 1.210 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.878 8.778 13.889 20.274 hybrid contribution -0.560 -1.833 0.716 2.046 sum 11.319 6.944 14.604 19.739 Atomic orbital electron populations 1.22867 0.94006 1.03450 1.05782 1.21165 0.93788 0.96525 0.83575 0.89067 1.22013 0.94464 1.01996 0.97677 1.21074 0.95187 1.00054 0.93936 0.90211 1.22220 0.80637 0.99524 0.97252 1.86421 1.20171 1.83262 1.50187 1.21903 1.01839 0.98823 0.93648 1.21584 0.78886 1.01594 0.99255 1.57899 1.17393 1.71873 1.36679 1.04950 0.73471 0.77106 0.73668 1.93523 1.60041 1.56646 1.86560 1.93462 1.68071 1.87484 1.49669 1.30649 1.10560 1.19700 1.11031 1.17916 0.90227 0.95100 0.89953 1.22168 1.01247 0.96388 1.01603 1.22197 0.99643 0.99262 1.00573 1.21296 1.24214 1.05164 1.04728 0.92050 1.25674 0.96645 1.00732 0.95097 1.69953 1.32397 1.39572 1.12775 0.85566 0.78028 0.79830 0.78558 1.18974 1.20818 1.20995 0.87848 0.89393 0.93586 0.91208 0.87889 0.91918 0.93370 0.75537 0.91959 0.89688 0.90059 0.90082 0.85493 0.84597 0.94905 0.91170 0.93995 0.94412 0.90984 0.95157 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.02 7.71 71.98 0.55 -4.47 16 2 C 0.15 3.40 3.46 44.92 0.16 3.56 16 3 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.12 -2.01 4.62 30.67 0.14 -1.87 16 5 C -0.08 -1.39 2.39 -10.77 -0.03 -1.41 16 6 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 7 C 0.08 1.09 6.43 71.98 0.46 1.56 16 8 O -0.59 -8.72 13.17 -148.98 -1.96 -10.68 16 9 C -0.12 -2.47 5.27 30.67 0.16 -2.31 16 10 C 0.11 2.73 6.35 86.36 0.55 3.28 16 11 N -1.00 -27.84 3.23 -490.16 -1.58 -29.43 16 12 S 2.61 98.10 3.83 -56.49 -0.22 97.88 16 13 O -0.98 -39.88 11.58 -127.65 -1.48 -41.36 16 14 O -1.00 -43.14 14.09 -127.65 -1.80 -44.94 16 15 C -0.59 -22.89 4.82 71.98 0.35 -22.54 16 16 C 0.07 3.42 0.52 -52.93 -0.03 3.39 16 17 C -0.16 -7.78 7.77 71.98 0.56 -7.22 16 18 C -0.16 -8.09 7.78 71.98 0.56 -7.53 16 19 C -0.51 -26.93 8.01 25.60 0.21 -26.73 16 20 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 21 C 0.02 0.95 5.15 84.65 0.44 1.38 16 22 N -0.91 -50.53 9.35 21.45 0.20 -50.33 16 23 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 H 0.10 1.83 8.09 -2.39 -0.02 1.81 16 28 H 0.09 2.61 6.07 -2.39 -0.01 2.60 16 29 H 0.05 1.28 4.64 -2.39 -0.01 1.27 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.40 2.37 9.12 -74.06 -0.68 1.70 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.64 7.79 -2.39 -0.02 1.62 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.21 6.86 -2.39 -0.02 2.19 16 39 H 0.13 4.56 8.14 -2.39 -0.02 4.54 16 40 H 0.14 4.74 6.05 -2.39 -0.01 4.72 16 41 H 0.03 1.56 5.47 -2.39 -0.01 1.55 16 42 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 43 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 46 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 47 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -68.30 353.69 -0.44 -68.75 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.29 Total: 26.85 kcal Atomic # 6 Polarization: -64.99 SS G_CDS: 4.08 Total: -60.91 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.38 Total: -79.75 kcal Atomic # 8 Polarization: -91.74 SS G_CDS: -5.24 Total: -96.98 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 98.10 SS G_CDS: -0.22 Total: 97.88 kcal Total: -68.30 -0.44 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451552995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.634 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds