Wall clock time and date at job start Tue Mar 31 2020 13:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.05605 * 2 1 4 4 C 1.54264 * 110.03459 * 238.58019 * 2 1 3 5 5 C 1.54891 * 104.19914 * 264.32816 * 4 2 1 6 6 C 1.54887 * 102.74610 * 322.05789 * 5 4 2 7 7 C 1.53876 * 110.02719 * 121.41698 * 2 1 3 8 8 O 1.42891 * 110.07617 * 359.97438 * 7 2 1 9 9 C 1.53006 * 110.03052 * 238.56781 * 7 2 1 10 10 N 1.46499 * 109.47155 * 186.38195 * 9 7 2 11 11 S 1.65596 * 119.99861 * 165.00028 * 10 9 7 12 12 O 1.42098 * 104.27742 * 181.06987 * 11 10 9 13 13 O 1.42093 * 104.27781 * 308.93063 * 11 10 9 14 14 C 1.81406 * 104.44833 * 65.00223 * 11 10 9 15 15 C 1.53002 * 109.47054 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47029 * 299.99898 * 15 14 11 17 17 C 1.53004 * 109.46801 * 60.00101 * 15 14 11 18 18 C 1.50698 * 109.46904 * 179.97438 * 15 14 11 19 19 H 1.07997 * 119.99928 * 0.02562 * 18 15 14 20 20 C 1.37880 * 120.00008 * 179.97438 * 18 15 14 21 21 N 1.31521 * 119.99642 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00171 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.46939 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46976 * 120.00417 * 22 20 18 25 25 H 1.48505 * 109.46937 * 240.00381 * 22 20 18 26 26 H 1.08992 * 109.47474 * 298.58673 * 1 2 3 27 27 H 1.09007 * 109.46738 * 58.58307 * 1 2 3 28 28 H 1.08997 * 109.46859 * 178.57783 * 1 2 3 29 29 H 1.08998 * 110.48383 * 145.64543 * 4 2 1 30 30 H 1.09002 * 110.48235 * 23.00969 * 4 2 1 31 31 H 1.08998 * 110.75336 * 203.74159 * 5 4 2 32 32 H 1.08996 * 110.75369 * 80.37418 * 5 4 2 33 33 H 1.09005 * 110.48774 * 279.26461 * 6 5 4 34 34 H 1.09000 * 110.48681 * 156.62216 * 6 5 4 35 35 H 0.96700 * 114.00040 * 179.28577 * 8 7 2 36 36 H 1.09000 * 109.47225 * 306.38603 * 9 7 2 37 37 H 1.09005 * 109.46733 * 66.38004 * 9 7 2 38 38 H 0.97000 * 119.99987 * 345.00218 * 10 9 7 39 39 H 1.09002 * 109.47062 * 299.99739 * 14 11 10 40 40 H 1.09001 * 109.47381 * 59.99677 * 14 11 10 41 41 H 1.08997 * 109.46729 * 60.00178 * 16 15 14 42 42 H 1.08999 * 109.46502 * 179.97438 * 16 15 14 43 43 H 1.09001 * 109.47092 * 299.99844 * 16 15 14 44 44 H 1.08994 * 109.47072 * 59.99970 * 17 15 14 45 45 H 1.09000 * 109.46776 * 179.97438 * 17 15 14 46 46 H 1.09005 * 109.47143 * 299.99571 * 17 15 14 47 47 H 0.97001 * 119.99648 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3281 -2.1902 -0.7191 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 8 0.9641 -1.2329 2.0196 9 6 2.9408 0.1703 2.0742 10 7 3.5572 -0.5975 3.1590 11 16 4.8376 0.0351 3.9973 12 8 5.1792 -0.9785 4.9327 13 8 5.7524 0.4388 2.9877 14 6 4.1505 1.4819 4.8491 15 6 5.2497 2.1609 5.6687 16 6 5.7991 1.1745 6.7011 17 6 6.3789 2.6061 4.7372 18 6 4.6790 3.3631 6.3758 19 1 3.6365 3.6172 6.2532 20 6 5.4875 4.1381 7.1800 21 7 6.7570 3.8283 7.3296 22 14 4.7800 5.6279 8.0571 23 1 3.3381 5.7583 7.7266 24 1 4.9379 5.4598 9.5241 25 1 5.5014 6.8495 7.6182 26 1 -0.3634 0.4917 0.9023 27 1 -0.3633 0.5357 -0.8771 28 1 -0.3633 -1.0273 -0.0255 29 1 2.9811 -0.3001 -1.5965 30 1 1.3062 -0.7696 -2.0254 31 1 3.0676 -2.6931 -1.3422 32 1 1.4031 -2.7652 -0.6752 33 1 3.9440 -1.6767 0.6572 34 1 2.7401 -2.8197 1.3310 35 1 1.2322 -1.7265 2.8067 36 1 3.7201 0.5995 1.4445 37 1 2.3324 0.9706 2.4956 38 1 3.2154 -1.4764 3.3862 39 1 3.7587 2.1845 4.1136 40 1 3.3462 1.1647 5.5130 41 1 6.2119 0.3052 6.1893 42 1 6.5825 1.6581 7.2846 43 1 4.9946 0.8573 7.3647 44 1 5.9875 3.3088 4.0017 45 1 7.1618 3.0902 5.3210 46 1 6.7918 1.7368 4.2254 47 1 7.3259 4.3737 7.8950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451613003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:11 Heat of formation + Delta-G solvation = -142.907393 kcal Electronic energy + Delta-G solvation = -26824.720445 eV Core-core repulsion = 23133.903173 eV Total energy + Delta-G solvation = -3690.817271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00002 -36.58546 -36.29898 -35.52414 -35.32809 -34.37880 -31.68509 -31.27626 -28.76730 -26.65520 -26.16978 -25.73966 -25.24717 -23.67074 -21.09177 -19.92959 -19.49053 -18.77261 -17.65119 -16.76140 -16.30140 -15.98606 -15.63179 -15.39744 -15.21044 -14.72906 -14.44903 -14.12219 -13.65012 -13.19063 -13.12801 -13.03128 -12.79975 -12.59928 -12.53271 -12.24208 -12.13074 -11.99159 -11.48097 -11.45412 -11.20534 -11.15988 -11.09699 -10.94779 -10.82205 -10.76930 -10.73862 -10.57098 -10.37830 -10.30438 -10.15456 -10.07086 -9.68822 -9.66246 -9.30315 -8.69137 -8.42264 -6.05405 -4.17358 0.81677 3.13597 3.23820 3.32386 3.35057 3.91809 4.20102 4.26821 4.34180 4.36791 4.48242 4.75238 4.91500 5.06846 5.12716 5.13759 5.20085 5.32406 5.34710 5.37278 5.54217 5.63216 5.64894 5.67571 5.72755 5.76034 5.78141 5.89736 5.98886 6.04998 6.10218 6.29104 6.35295 6.67906 6.77202 6.87728 6.94553 7.03963 7.29247 7.45849 7.48082 7.66194 7.95964 8.07583 8.30911 8.81468 9.48284 10.95956 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003538 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.773434 B = 7912.296755 C = 8540.029257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.151 4.151 7 C 0.129 3.871 8 O -0.548 6.548 9 C 0.091 3.909 10 N -1.130 6.130 11 S 2.595 3.405 12 O -0.965 6.965 13 O -0.963 6.963 14 C -0.581 4.581 15 C 0.081 3.919 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.372 0.628 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.407 0.593 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 -9.641 -14.025 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.160 4.160 5 C -0.158 4.158 6 C -0.189 4.189 7 C 0.087 3.913 8 O -0.353 6.353 9 C -0.036 4.036 10 N -0.887 5.887 11 S 2.693 3.307 12 O -0.955 6.955 13 O -0.953 6.953 14 C -0.715 4.715 15 C 0.079 3.921 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.522 5.522 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.220 0.780 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.240 0.760 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.565 -9.475 -14.483 19.774 hybrid contribution -0.720 0.629 1.269 1.589 sum -10.285 -8.846 -13.214 18.938 Atomic orbital electron populations 1.21518 0.93664 1.02180 1.01174 1.21769 0.97395 0.99056 0.92113 0.89898 1.22475 1.01114 0.95486 0.96893 1.22436 1.00815 0.96855 0.95715 1.23078 1.00548 0.97968 0.97273 1.22009 0.85768 0.92823 0.90672 1.86598 1.33043 1.75211 1.40495 1.22084 0.97458 0.94596 0.89427 1.55844 1.55150 1.29402 1.48351 1.05599 0.73793 0.76918 0.74407 1.93555 1.81571 1.56725 1.63650 1.93537 1.59905 1.84096 1.57794 1.30513 1.12125 1.16761 1.12055 1.17943 0.88625 0.94240 0.91293 1.22273 1.02455 0.96694 1.00708 1.22273 1.01369 0.99985 0.98480 1.20980 0.96034 1.09369 1.27712 0.92253 1.24945 0.94884 0.97643 0.96296 1.69815 1.04851 1.38882 1.38611 0.86477 0.79177 0.82566 0.79412 1.19829 1.20945 1.20934 0.92124 0.93333 0.92259 0.91193 0.91157 0.91502 0.91329 0.90064 0.91033 0.78008 0.89283 0.90838 0.76032 0.86511 0.86245 0.95405 0.88624 0.94467 0.94493 0.88649 0.95346 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.08 37.16 0.30 -0.84 16 2 C -0.08 -0.76 3.16 -89.50 -0.28 -1.04 16 3 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 4 C -0.12 -0.98 6.37 -25.07 -0.16 -1.14 16 5 C -0.12 -0.98 6.91 -24.74 -0.17 -1.15 16 6 C -0.15 -1.40 5.45 -25.07 -0.14 -1.53 16 7 C 0.13 1.25 1.02 -89.50 -0.09 1.16 16 8 O -0.55 -5.22 11.13 -35.23 -0.39 -5.61 16 9 C 0.09 1.03 4.93 -4.04 -0.02 1.01 16 10 N -1.13 -14.07 5.40 -10.61 -0.06 -14.13 16 11 S 2.59 46.00 4.49 -107.50 -0.48 45.52 16 12 O -0.96 -19.60 15.70 -57.54 -0.90 -20.50 16 13 O -0.96 -19.53 15.12 -57.54 -0.87 -20.40 16 14 C -0.58 -11.06 5.01 37.16 0.19 -10.87 16 15 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 16 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 17 C -0.16 -3.98 7.77 37.16 0.29 -3.69 16 18 C -0.50 -13.08 8.01 -34.44 -0.28 -13.36 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 21 N -0.88 -24.00 9.35 55.43 0.52 -23.48 16 22 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 7.84 -51.93 -0.41 0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 34 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.37 2.65 7.96 45.56 0.36 3.01 16 36 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.41 4.10 7.41 -34.47 -0.26 3.85 16 39 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 40 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 41 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 42 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 46 H 0.03 0.65 5.47 -51.93 -0.28 0.37 16 47 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -31.72 364.83 -9.24 -40.96 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.28 Total: 8.32 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: -0.24 Total: -31.69 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.46 Total: -37.61 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -2.17 Total: -46.52 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 46.00 SS G_CDS: -0.48 Total: 45.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.72 -9.24 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451613003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.948 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds