Wall clock time and date at job start Tue Mar 31 2020 13:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.05605 * 2 1 4 4 C 1.54264 * 110.03459 * 238.58019 * 2 1 3 5 5 C 1.54891 * 104.19914 * 264.32816 * 4 2 1 6 6 C 1.54887 * 102.74610 * 322.05789 * 5 4 2 7 7 C 1.53876 * 110.02719 * 121.41698 * 2 1 3 8 8 O 1.42891 * 110.07617 * 359.97438 * 7 2 1 9 9 C 1.53006 * 110.03052 * 238.56781 * 7 2 1 10 10 N 1.46499 * 109.47155 * 186.38195 * 9 7 2 11 11 S 1.65596 * 119.99861 * 165.00028 * 10 9 7 12 12 O 1.42098 * 104.27742 * 181.06987 * 11 10 9 13 13 O 1.42093 * 104.27781 * 308.93063 * 11 10 9 14 14 C 1.81406 * 104.44833 * 65.00223 * 11 10 9 15 15 C 1.53002 * 109.47054 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47029 * 299.99898 * 15 14 11 17 17 C 1.53004 * 109.46801 * 60.00101 * 15 14 11 18 18 C 1.50698 * 109.46904 * 179.97438 * 15 14 11 19 19 H 1.07997 * 119.99928 * 0.02562 * 18 15 14 20 20 C 1.37880 * 120.00008 * 179.97438 * 18 15 14 21 21 N 1.31521 * 119.99642 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00171 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.46939 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46976 * 120.00417 * 22 20 18 25 25 H 1.48505 * 109.46937 * 240.00381 * 22 20 18 26 26 H 1.08992 * 109.47474 * 298.58673 * 1 2 3 27 27 H 1.09007 * 109.46738 * 58.58307 * 1 2 3 28 28 H 1.08997 * 109.46859 * 178.57783 * 1 2 3 29 29 H 1.08998 * 110.48383 * 145.64543 * 4 2 1 30 30 H 1.09002 * 110.48235 * 23.00969 * 4 2 1 31 31 H 1.08998 * 110.75336 * 203.74159 * 5 4 2 32 32 H 1.08996 * 110.75369 * 80.37418 * 5 4 2 33 33 H 1.09005 * 110.48774 * 279.26461 * 6 5 4 34 34 H 1.09000 * 110.48681 * 156.62216 * 6 5 4 35 35 H 0.96700 * 114.00040 * 179.28577 * 8 7 2 36 36 H 1.09000 * 109.47225 * 306.38603 * 9 7 2 37 37 H 1.09005 * 109.46733 * 66.38004 * 9 7 2 38 38 H 0.97000 * 119.99987 * 345.00218 * 10 9 7 39 39 H 1.09002 * 109.47062 * 299.99739 * 14 11 10 40 40 H 1.09001 * 109.47381 * 59.99677 * 14 11 10 41 41 H 1.08997 * 109.46729 * 60.00178 * 16 15 14 42 42 H 1.08999 * 109.46502 * 179.97438 * 16 15 14 43 43 H 1.09001 * 109.47092 * 299.99844 * 16 15 14 44 44 H 1.08994 * 109.47072 * 59.99970 * 17 15 14 45 45 H 1.09000 * 109.46776 * 179.97438 * 17 15 14 46 46 H 1.09005 * 109.47143 * 299.99571 * 17 15 14 47 47 H 0.97001 * 119.99648 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3281 -2.1902 -0.7191 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 8 0.9641 -1.2329 2.0196 9 6 2.9408 0.1703 2.0742 10 7 3.5572 -0.5975 3.1590 11 16 4.8376 0.0351 3.9973 12 8 5.1792 -0.9785 4.9327 13 8 5.7524 0.4388 2.9877 14 6 4.1505 1.4819 4.8491 15 6 5.2497 2.1609 5.6687 16 6 5.7991 1.1745 6.7011 17 6 6.3789 2.6061 4.7372 18 6 4.6790 3.3631 6.3758 19 1 3.6365 3.6172 6.2532 20 6 5.4875 4.1381 7.1800 21 7 6.7570 3.8283 7.3296 22 14 4.7800 5.6279 8.0571 23 1 3.3381 5.7583 7.7266 24 1 4.9379 5.4598 9.5241 25 1 5.5014 6.8495 7.6182 26 1 -0.3634 0.4917 0.9023 27 1 -0.3633 0.5357 -0.8771 28 1 -0.3633 -1.0273 -0.0255 29 1 2.9811 -0.3001 -1.5965 30 1 1.3062 -0.7696 -2.0254 31 1 3.0676 -2.6931 -1.3422 32 1 1.4031 -2.7652 -0.6752 33 1 3.9440 -1.6767 0.6572 34 1 2.7401 -2.8197 1.3310 35 1 1.2322 -1.7265 2.8067 36 1 3.7201 0.5995 1.4445 37 1 2.3324 0.9706 2.4956 38 1 3.2154 -1.4764 3.3862 39 1 3.7587 2.1845 4.1136 40 1 3.3462 1.1647 5.5130 41 1 6.2119 0.3052 6.1893 42 1 6.5825 1.6581 7.2846 43 1 4.9946 0.8573 7.3647 44 1 5.9875 3.3088 4.0017 45 1 7.1618 3.0902 5.3210 46 1 6.7918 1.7368 4.2254 47 1 7.3259 4.3737 7.8950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451613003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:10 Heat of formation + Delta-G solvation = -165.432932 kcal Electronic energy + Delta-G solvation = -26825.697225 eV Core-core repulsion = 23133.903173 eV Total energy + Delta-G solvation = -3691.794052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73843 -38.13284 -38.11325 -36.91497 -36.27096 -35.32024 -33.63547 -31.95279 -29.61200 -28.30528 -27.69388 -27.25974 -26.87372 -24.47435 -21.81602 -21.40396 -20.61457 -20.02716 -18.93722 -18.07312 -17.68676 -17.08727 -16.89741 -16.64714 -16.44777 -16.28188 -15.52961 -15.13179 -14.83832 -14.64930 -14.43027 -14.36423 -13.89118 -13.83626 -13.58506 -13.46679 -13.26324 -13.05481 -13.03593 -12.91854 -12.84365 -12.75321 -12.50873 -12.19181 -12.15022 -12.12068 -11.95823 -11.85281 -11.57254 -11.49152 -11.47222 -11.36129 -11.28791 -10.88057 -10.69227 -10.42490 -10.31516 -8.03670 -6.22120 -0.62115 1.42565 1.45852 1.55225 1.87129 2.43836 2.83896 3.18422 3.21381 3.33204 3.52566 3.63491 3.72441 3.99774 4.17060 4.24291 4.31873 4.39338 4.44752 4.48995 4.59770 4.65530 4.70118 4.80154 4.84852 4.86585 4.89760 4.99434 5.00936 5.08226 5.08677 5.10098 5.19305 5.29406 5.37112 5.38624 5.44538 5.50631 5.61527 5.64639 5.97535 6.03666 6.11657 6.33991 6.82979 6.83454 7.46364 8.96303 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003538 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.773434 B = 7912.296755 C = 8540.029257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.155 4.155 7 C 0.135 3.865 8 O -0.554 6.554 9 C 0.083 3.917 10 N -1.110 6.110 11 S 2.619 3.381 12 O -0.991 6.991 13 O -0.989 6.989 14 C -0.587 4.587 15 C 0.068 3.932 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.516 4.516 19 H 0.062 0.938 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 0.954 3.046 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.382 0.618 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -9.940 -15.053 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.193 4.193 7 C 0.092 3.908 8 O -0.361 6.361 9 C -0.044 4.044 10 N -0.872 5.872 11 S 2.716 3.284 12 O -0.982 6.982 13 O -0.979 6.979 14 C -0.720 4.720 15 C 0.066 3.934 16 C -0.218 4.218 17 C -0.217 4.217 18 C -0.555 4.555 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.780 3.220 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.232 0.768 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.257 0.743 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.424 -9.781 -15.496 21.594 hybrid contribution -0.173 0.678 1.546 1.697 sum -11.596 -9.104 -13.950 20.297 Atomic orbital electron populations 1.21469 0.93495 1.01891 1.01193 1.21851 0.97520 0.99314 0.92222 0.89669 1.22487 1.01479 0.95162 0.96726 1.22436 1.01032 0.97085 0.95067 1.23107 0.99771 0.98115 0.98291 1.21964 0.85531 0.92682 0.90584 1.86593 1.33059 1.75348 1.41084 1.22331 0.97678 0.95230 0.89113 1.55290 1.54150 1.29907 1.47815 1.04597 0.74067 0.76009 0.73775 1.93512 1.82578 1.57250 1.64827 1.93502 1.61578 1.84464 1.58359 1.30459 1.11059 1.17890 1.12542 1.17935 0.89825 0.94064 0.91602 1.22206 1.01847 0.96875 1.00851 1.22197 1.01085 1.00078 0.98330 1.21326 0.96223 1.10153 1.27828 0.91932 1.25676 0.95211 1.00147 0.97169 1.69954 1.05824 1.39757 1.39125 0.85568 0.78811 0.79488 0.78120 1.18981 1.21005 1.20935 0.93155 0.92201 0.92714 0.91069 0.90091 0.90841 0.91082 0.91274 0.90252 0.76845 0.89728 0.89841 0.74299 0.84668 0.84515 0.94867 0.91100 0.94127 0.94076 0.91162 0.94800 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 8.08 71.98 0.58 -1.35 16 2 C -0.09 -1.43 3.16 -10.07 -0.03 -1.47 16 3 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 4 C -0.12 -1.67 6.37 31.67 0.20 -1.47 16 5 C -0.12 -1.69 6.91 31.88 0.22 -1.47 16 6 C -0.15 -2.57 5.45 31.67 0.17 -2.40 16 7 C 0.13 2.32 1.02 -10.07 -0.01 2.31 16 8 O -0.55 -9.26 11.13 -148.98 -1.66 -10.91 16 9 C 0.08 1.69 4.93 86.38 0.43 2.12 16 10 N -1.11 -25.42 5.40 -187.48 -1.01 -26.43 16 11 S 2.62 89.54 4.49 -56.49 -0.25 89.28 16 12 O -0.99 -39.31 15.70 -127.65 -2.00 -41.31 16 13 O -0.99 -39.26 15.12 -127.65 -1.93 -41.19 16 14 C -0.59 -21.45 5.01 71.98 0.36 -21.08 16 15 C 0.07 3.22 0.52 -52.93 -0.03 3.20 16 16 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 17 C -0.16 -7.79 7.77 71.98 0.56 -7.23 16 18 C -0.52 -26.63 8.01 25.60 0.21 -26.43 16 19 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 20 C 0.02 0.91 5.15 84.65 0.44 1.35 16 21 N -0.91 -50.06 9.35 21.45 0.20 -49.86 16 22 Si 0.95 41.94 29.54 68.60 2.03 43.96 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H 0.05 0.89 7.87 -2.39 -0.02 0.87 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.05 0.90 7.87 -2.39 -0.02 0.89 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.95 7.84 -2.39 -0.02 0.93 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.32 7.85 -2.38 -0.02 1.31 16 34 H 0.08 1.17 8.05 -2.39 -0.02 1.15 16 35 H 0.38 4.48 7.96 -74.06 -0.59 3.89 16 36 H 0.08 1.85 7.69 -2.39 -0.02 1.83 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.42 7.52 7.41 -96.75 -0.72 6.80 16 39 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 40 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 41 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 42 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 43 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 46 H 0.03 1.57 5.47 -2.38 -0.01 1.56 16 47 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -66.86 364.83 -1.32 -68.17 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.34 Total: 29.52 kcal Atomic # 6 Polarization: -64.89 SS G_CDS: 3.65 Total: -61.23 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -0.81 Total: -76.29 kcal Atomic # 8 Polarization: -87.82 SS G_CDS: -5.59 Total: -93.41 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 89.54 SS G_CDS: -0.25 Total: 89.28 kcal Total: -66.86 -1.32 -68.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451613003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.258 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds