Wall clock time and date at job start Tue Mar 31 2020 13:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.43552 * 2 1 4 4 C 1.54274 * 110.48468 * 122.54182 * 2 1 3 5 5 C 1.53868 * 106.59820 * 142.42239 * 4 2 1 6 6 C 1.54264 * 106.60200 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.48623 * 95.20214 * 6 5 4 8 8 N 1.46496 * 110.48866 * 217.71501 * 6 5 4 9 9 C 1.46494 * 120.00354 * 66.56302 * 8 6 5 10 10 C 1.52998 * 109.47079 * 87.63143 * 9 8 6 11 11 O 1.42900 * 109.47254 * 68.29903 * 10 9 8 12 12 S 1.65599 * 119.99879 * 246.56455 * 8 6 5 13 13 O 1.42099 * 104.28028 * 26.07137 * 12 8 6 14 14 O 1.42100 * 104.28067 * 153.92925 * 12 8 6 15 15 C 1.81403 * 104.45090 * 269.99903 * 12 8 6 16 16 C 1.53004 * 109.47442 * 180.02562 * 15 12 8 17 17 C 1.52992 * 109.47144 * 180.02562 * 16 15 12 18 18 C 1.50700 * 109.47112 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99994 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00282 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00401 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46956 * 60.00107 * 22 20 18 24 24 H 1.48492 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46955 * 300.00460 * 22 20 18 26 26 C 1.54887 * 110.60017 * 237.38043 * 2 1 3 27 27 H 1.08994 * 109.47500 * 298.91190 * 1 2 3 28 28 H 1.09002 * 109.47247 * 58.91441 * 1 2 3 29 29 H 1.09004 * 109.47036 * 178.91136 * 1 2 3 30 30 H 1.09000 * 110.03147 * 23.13239 * 4 2 1 31 31 H 1.09002 * 110.07009 * 261.73079 * 4 2 1 32 32 H 1.09002 * 110.03175 * 240.71368 * 5 4 2 33 33 H 1.09000 * 110.03182 * 119.28493 * 5 4 2 34 34 H 1.09002 * 109.47235 * 327.63317 * 9 8 6 35 35 H 1.09000 * 109.47500 * 207.63164 * 9 8 6 36 36 H 1.09005 * 109.47491 * 308.29623 * 10 9 8 37 37 H 1.09000 * 109.47375 * 188.30033 * 10 9 8 38 38 H 0.96703 * 114.00009 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47278 * 300.00166 * 15 12 8 40 40 H 1.09006 * 109.47014 * 60.00162 * 15 12 8 41 41 H 1.09003 * 109.46523 * 300.00275 * 16 15 12 42 42 H 1.09000 * 109.46617 * 59.99756 * 16 15 12 43 43 H 1.08999 * 109.47389 * 300.00029 * 17 16 15 44 44 H 1.09006 * 109.47202 * 60.00207 * 17 16 15 45 45 H 0.97002 * 120.00196 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.75515 * 85.00822 * 26 2 1 47 47 H 1.08999 * 110.75739 * 321.63756 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7774 1.2183 5 6 3.3184 -1.5369 0.7369 6 6 3.4934 -1.1952 -0.7572 7 1 4.1928 -0.3683 -0.8800 8 7 3.9546 -2.3699 -1.5013 9 6 3.0786 -3.5350 -1.6470 10 6 2.1919 -3.3552 -2.8808 11 8 2.9968 -3.4220 -4.0597 12 16 5.4661 -2.3807 -2.1776 13 8 6.2148 -1.4765 -1.3769 14 8 5.8103 -3.7578 -2.2445 15 6 5.2218 -1.7041 -3.8428 16 6 6.5628 -1.6628 -4.5785 17 6 6.3568 -1.0916 -5.9827 18 6 7.6777 -1.0503 -6.7070 19 1 8.5743 -1.3973 -6.2151 20 6 7.7413 -0.5706 -7.9980 21 7 6.6494 -0.1486 -8.5973 22 14 9.3785 -0.5202 -8.8961 23 1 9.9305 -1.8951 -8.9967 24 1 9.1786 0.0344 -10.2590 25 1 10.3281 0.3408 -8.1462 26 6 2.0749 -0.7815 -1.2211 27 1 -0.3634 0.4968 0.8995 28 1 -0.3634 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.3184 -1.4820 1.5745 31 1 2.3387 -0.0840 2.0152 32 1 3.1729 -2.6102 0.8595 33 1 4.1934 -1.2117 1.2997 34 1 2.4520 -3.6318 -0.7603 35 1 3.6850 -4.4333 -1.7632 36 1 1.6960 -2.3856 -2.8339 37 1 1.4420 -4.1458 -2.9077 38 1 2.4993 -3.3160 -4.8822 39 1 4.5252 -2.3363 -4.3934 40 1 4.8162 -0.6950 -3.7691 41 1 7.2597 -1.0308 -4.0280 42 1 6.9679 -2.6721 -4.6521 43 1 5.6597 -1.7232 -6.5333 44 1 5.9518 -0.0822 -5.9086 45 1 6.6942 0.1893 -9.5055 46 1 2.1278 -0.1381 -2.0993 47 1 1.4628 -1.6608 -1.4216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452016953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:27 Heat of formation + Delta-G solvation = -143.621143 kcal Electronic energy + Delta-G solvation = -26594.236801 eV Core-core repulsion = 22903.388579 eV Total energy + Delta-G solvation = -3690.848222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.45330 -37.30351 -36.60383 -35.60297 -34.91416 -34.45980 -32.08030 -31.05008 -29.17133 -28.26410 -27.64241 -24.84430 -23.59962 -22.77984 -20.72208 -20.33803 -20.14910 -18.53693 -17.94802 -17.40638 -16.52167 -16.17804 -16.03730 -15.49535 -15.16987 -14.95922 -14.45020 -14.16406 -13.94212 -13.89000 -13.63564 -13.42042 -12.67382 -12.58693 -12.46412 -12.36140 -12.17369 -12.05004 -11.77553 -11.66693 -11.55130 -11.39699 -11.25369 -11.11366 -11.04547 -10.95311 -10.88069 -10.82234 -10.71534 -10.54731 -10.31729 -9.97168 -9.74859 -9.39086 -9.16650 -8.81531 -8.35156 -6.00781 -4.03102 0.65778 2.83465 3.35298 3.38605 3.42392 4.01249 4.18412 4.30547 4.35073 4.41707 4.47177 4.60387 4.81469 4.93351 4.99581 5.04039 5.12275 5.22068 5.23559 5.28208 5.34535 5.35570 5.36745 5.40879 5.50672 5.57789 5.58504 5.66137 5.70842 5.83068 5.88464 5.90198 6.01708 6.17623 6.18337 6.25635 6.42045 6.63809 6.72813 6.99314 7.51283 7.64531 7.76582 7.98287 8.39966 9.02994 9.60980 11.10430 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003275 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.673744 B = 8547.216006 C = 8751.336817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.137 4.137 6 C 0.145 3.855 7 H 0.103 0.897 8 N -0.992 5.992 9 C 0.115 3.885 10 C 0.041 3.959 11 O -0.569 6.569 12 S 2.597 3.403 13 O -0.970 6.970 14 O -0.961 6.961 15 C -0.610 4.610 16 C -0.104 4.104 17 C 0.034 3.966 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.893 3.107 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.137 4.137 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.386 0.614 39 H 0.157 0.843 40 H 0.118 0.882 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 -2.958 17.829 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.176 4.176 6 C 0.039 3.961 7 H 0.121 0.879 8 N -0.826 5.826 9 C -0.010 4.010 10 C -0.038 4.038 11 O -0.376 6.376 12 S 2.696 3.304 13 O -0.960 6.960 14 O -0.952 6.952 15 C -0.742 4.742 16 C -0.144 4.144 17 C -0.004 4.004 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.721 3.279 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.176 4.176 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.174 0.826 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.596 -3.309 18.586 24.487 hybrid contribution -0.145 0.472 -1.448 1.530 sum -15.741 -2.837 17.139 23.443 Atomic orbital electron populations 1.21785 0.94869 1.01685 1.01654 1.21944 0.95570 0.99529 0.94756 0.90455 1.22180 0.96952 0.98848 0.97567 1.22524 0.98431 1.00965 0.95668 1.21727 0.96332 0.87182 0.90907 0.87873 1.57652 1.34896 1.22458 1.67548 1.21360 0.94191 0.89023 0.96470 1.23093 0.93595 1.00845 0.86314 1.86425 1.38520 1.96101 1.16577 1.05388 0.72620 0.74759 0.77593 1.93539 1.68597 1.66913 1.66966 1.93523 1.81318 1.32664 1.87677 1.30720 1.09608 1.12843 1.21045 1.21462 0.90692 1.01872 1.00330 1.19018 0.97230 0.96043 0.88133 1.21257 0.94343 1.42029 0.98685 0.92512 1.25007 0.96529 0.95298 0.97517 1.69950 1.27406 1.42829 1.13386 0.86632 0.84089 0.78474 0.78690 1.20135 1.21285 1.20156 1.23187 0.95905 1.00515 0.98003 0.92732 0.92626 0.92727 0.91723 0.91745 0.91073 0.91027 0.88919 0.88058 0.91963 0.92802 0.76538 0.82599 0.86388 0.92225 0.91892 0.96079 0.96324 0.92942 0.90853 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.12 37.16 0.34 -0.52 16 2 C -0.10 -0.71 3.45 -88.96 -0.31 -1.02 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.85 6.37 -25.61 -0.16 -1.01 16 5 C -0.14 -1.26 6.36 -25.62 -0.16 -1.42 16 6 C 0.14 1.53 3.10 -66.28 -0.21 1.32 16 7 H 0.10 1.20 7.16 -51.93 -0.37 0.83 16 8 N -0.99 -12.06 2.71 -105.57 -0.29 -12.35 16 9 C 0.12 1.15 5.12 -4.05 -0.02 1.13 16 10 C 0.04 0.34 6.94 37.16 0.26 0.60 16 11 O -0.57 -6.19 10.06 -35.23 -0.35 -6.55 16 12 S 2.60 43.33 5.23 -107.50 -0.56 42.77 16 13 O -0.97 -18.48 16.72 -57.54 -0.96 -19.45 16 14 O -0.96 -18.64 16.55 -57.54 -0.95 -19.60 16 15 C -0.61 -10.50 5.91 37.16 0.22 -10.28 16 16 C -0.10 -2.26 5.16 -26.73 -0.14 -2.40 16 17 C 0.03 0.89 4.97 -27.89 -0.14 0.75 16 18 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.14 -1.12 4.83 -24.75 -0.12 -1.24 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 7.84 -51.93 -0.41 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.62 6.79 -51.93 -0.35 0.27 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.67 6.88 -51.93 -0.36 0.32 16 35 H 0.10 1.19 6.86 -51.93 -0.36 0.83 16 36 H 0.06 0.45 5.13 -51.93 -0.27 0.19 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.39 2.82 9.12 45.56 0.42 3.24 16 39 H 0.16 2.53 4.75 -51.92 -0.25 2.28 16 40 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.58 4.89 -51.93 -0.25 0.33 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -35.75 372.64 -9.87 -45.62 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.23 Total: 1.15 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -0.85 Total: -27.99 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.45 Total: -38.49 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.27 Total: -45.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 43.33 SS G_CDS: -0.56 Total: 42.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.75 -9.87 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452016953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.999 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds