Wall clock time and date at job start Tue Mar 31 2020 13:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.43552 * 2 1 4 4 C 1.54274 * 110.48468 * 122.54182 * 2 1 3 5 5 C 1.53868 * 106.59820 * 142.42239 * 4 2 1 6 6 C 1.54264 * 106.60200 * 359.97438 * 5 4 2 7 7 H 1.08999 * 110.48623 * 95.20214 * 6 5 4 8 8 N 1.46496 * 110.48866 * 217.71501 * 6 5 4 9 9 C 1.46494 * 120.00354 * 66.56302 * 8 6 5 10 10 C 1.52998 * 109.47079 * 87.63143 * 9 8 6 11 11 O 1.42900 * 109.47254 * 68.29903 * 10 9 8 12 12 S 1.65599 * 119.99879 * 246.56455 * 8 6 5 13 13 O 1.42099 * 104.28028 * 26.07137 * 12 8 6 14 14 O 1.42100 * 104.28067 * 153.92925 * 12 8 6 15 15 C 1.81403 * 104.45090 * 269.99903 * 12 8 6 16 16 C 1.53004 * 109.47442 * 180.02562 * 15 12 8 17 17 C 1.52992 * 109.47144 * 180.02562 * 16 15 12 18 18 C 1.50700 * 109.47112 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99994 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00282 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00401 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46956 * 60.00107 * 22 20 18 24 24 H 1.48492 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46955 * 300.00460 * 22 20 18 26 26 C 1.54887 * 110.60017 * 237.38043 * 2 1 3 27 27 H 1.08994 * 109.47500 * 298.91190 * 1 2 3 28 28 H 1.09002 * 109.47247 * 58.91441 * 1 2 3 29 29 H 1.09004 * 109.47036 * 178.91136 * 1 2 3 30 30 H 1.09000 * 110.03147 * 23.13239 * 4 2 1 31 31 H 1.09002 * 110.07009 * 261.73079 * 4 2 1 32 32 H 1.09002 * 110.03175 * 240.71368 * 5 4 2 33 33 H 1.09000 * 110.03182 * 119.28493 * 5 4 2 34 34 H 1.09002 * 109.47235 * 327.63317 * 9 8 6 35 35 H 1.09000 * 109.47500 * 207.63164 * 9 8 6 36 36 H 1.09005 * 109.47491 * 308.29623 * 10 9 8 37 37 H 1.09000 * 109.47375 * 188.30033 * 10 9 8 38 38 H 0.96703 * 114.00009 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47278 * 300.00166 * 15 12 8 40 40 H 1.09006 * 109.47014 * 60.00162 * 15 12 8 41 41 H 1.09003 * 109.46523 * 300.00275 * 16 15 12 42 42 H 1.09000 * 109.46617 * 59.99756 * 16 15 12 43 43 H 1.08999 * 109.47389 * 300.00029 * 17 16 15 44 44 H 1.09006 * 109.47202 * 60.00207 * 17 16 15 45 45 H 0.97002 * 120.00196 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.75515 * 85.00822 * 26 2 1 47 47 H 1.08999 * 110.75739 * 321.63756 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7774 1.2183 5 6 3.3184 -1.5369 0.7369 6 6 3.4934 -1.1952 -0.7572 7 1 4.1928 -0.3683 -0.8800 8 7 3.9546 -2.3699 -1.5013 9 6 3.0786 -3.5350 -1.6470 10 6 2.1919 -3.3552 -2.8808 11 8 2.9968 -3.4220 -4.0597 12 16 5.4661 -2.3807 -2.1776 13 8 6.2148 -1.4765 -1.3769 14 8 5.8103 -3.7578 -2.2445 15 6 5.2218 -1.7041 -3.8428 16 6 6.5628 -1.6628 -4.5785 17 6 6.3568 -1.0916 -5.9827 18 6 7.6777 -1.0503 -6.7070 19 1 8.5743 -1.3973 -6.2151 20 6 7.7413 -0.5706 -7.9980 21 7 6.6494 -0.1486 -8.5973 22 14 9.3785 -0.5202 -8.8961 23 1 9.9305 -1.8951 -8.9967 24 1 9.1786 0.0344 -10.2590 25 1 10.3281 0.3408 -8.1462 26 6 2.0749 -0.7815 -1.2211 27 1 -0.3634 0.4968 0.8995 28 1 -0.3634 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.3184 -1.4820 1.5745 31 1 2.3387 -0.0840 2.0152 32 1 3.1729 -2.6102 0.8595 33 1 4.1934 -1.2117 1.2997 34 1 2.4520 -3.6318 -0.7603 35 1 3.6850 -4.4333 -1.7632 36 1 1.6960 -2.3856 -2.8339 37 1 1.4420 -4.1458 -2.9077 38 1 2.4993 -3.3160 -4.8822 39 1 4.5252 -2.3363 -4.3934 40 1 4.8162 -0.6950 -3.7691 41 1 7.2597 -1.0308 -4.0280 42 1 6.9679 -2.6721 -4.6521 43 1 5.6597 -1.7232 -6.5333 44 1 5.9518 -0.0822 -5.9086 45 1 6.6942 0.1893 -9.5055 46 1 2.1278 -0.1381 -2.0993 47 1 1.4628 -1.6608 -1.4216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452016953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:27 Heat of formation + Delta-G solvation = -169.640272 kcal Electronic energy + Delta-G solvation = -26595.365075 eV Core-core repulsion = 22903.388579 eV Total energy + Delta-G solvation = -3691.976496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19512 -38.38072 -37.69789 -37.04443 -36.45487 -35.66625 -34.12814 -31.69738 -29.94708 -29.55284 -28.97288 -25.68240 -25.33699 -23.59296 -22.35177 -21.31698 -20.90426 -19.62355 -18.94053 -18.63223 -18.31307 -17.28243 -17.14813 -16.64858 -16.47473 -16.34788 -15.84628 -15.44393 -14.88695 -14.64306 -14.45429 -14.31067 -14.02637 -13.99833 -13.57301 -13.49870 -13.34425 -13.26059 -13.11323 -12.97798 -12.94736 -12.71815 -12.62280 -12.53950 -12.21980 -12.15142 -11.99308 -11.83345 -11.67011 -11.57394 -11.43753 -11.37227 -11.21141 -10.99198 -10.59566 -10.56228 -9.89073 -8.22308 -6.33413 -0.68407 1.39272 1.42277 1.50190 1.67899 2.39874 2.82261 3.10547 3.19350 3.32753 3.57956 3.67087 3.84266 3.91700 4.03991 4.08951 4.26156 4.29883 4.39885 4.44082 4.50411 4.54834 4.59075 4.66600 4.71719 4.78484 4.79448 4.82335 4.96653 5.05550 5.07874 5.11827 5.19724 5.22959 5.24698 5.38429 5.42445 5.45368 5.47354 5.62288 5.63853 5.76328 5.79485 6.20500 6.80930 6.94143 7.35347 8.88940 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003275 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.673744 B = 8547.216006 C = 8751.336817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.134 3.866 7 H 0.086 0.914 8 N -0.981 5.981 9 C 0.106 3.894 10 C 0.039 3.961 11 O -0.598 6.598 12 S 2.616 3.384 13 O -0.997 6.997 14 O -0.991 6.991 15 C -0.610 4.610 16 C -0.103 4.103 17 C 0.038 3.962 18 C -0.556 4.556 19 H 0.057 0.943 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.132 4.132 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.399 0.601 39 H 0.168 0.832 40 H 0.133 0.867 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.005 0.995 44 H 0.001 0.999 45 H 0.266 0.734 46 H 0.070 0.930 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 -3.185 18.549 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.177 4.177 6 C 0.028 3.972 7 H 0.104 0.896 8 N -0.817 5.817 9 C -0.019 4.019 10 C -0.039 4.039 11 O -0.409 6.409 12 S 2.714 3.286 13 O -0.988 6.988 14 O -0.981 6.981 15 C -0.741 4.741 16 C -0.142 4.142 17 C 0.000 4.000 18 C -0.594 4.594 19 H 0.075 0.925 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.787 3.213 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.171 4.171 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.250 0.750 39 H 0.185 0.815 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.020 0.980 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.125 -3.535 19.296 26.040 hybrid contribution 0.255 0.542 -1.624 1.731 sum -16.870 -2.993 17.672 24.614 Atomic orbital electron populations 1.21760 0.93590 1.02368 1.01952 1.21940 0.96543 0.99073 0.94120 0.90995 1.22154 0.96186 0.98989 0.97579 1.22538 0.99050 1.01733 0.94355 1.21964 0.97383 0.86002 0.91856 0.89606 1.57295 1.33774 1.23876 1.66800 1.21689 0.94113 0.87110 0.98983 1.23219 0.93328 1.02721 0.84651 1.86348 1.40267 1.96237 1.18006 1.04527 0.73590 0.73518 0.76956 1.93498 1.70421 1.67496 1.67351 1.93480 1.82619 1.34067 1.87923 1.30699 1.07299 1.14352 1.21724 1.21281 0.93357 1.01114 0.98496 1.18885 0.95836 0.94923 0.90348 1.21712 0.95438 1.42589 0.99655 0.92502 1.25916 1.00500 0.94612 0.98329 1.70060 1.29589 1.43215 1.13870 0.85541 0.79351 0.78895 0.77537 1.19282 1.20327 1.19316 1.23192 0.94281 1.01269 0.98349 0.92208 0.92646 0.91817 0.90143 0.91442 0.90338 0.92402 0.85527 0.89979 0.90488 0.90020 0.74990 0.81452 0.84912 0.92478 0.92336 0.97659 0.98033 0.92572 0.91104 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.12 71.98 0.66 -0.60 16 2 C -0.10 -1.17 3.45 -9.72 -0.03 -1.20 16 3 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.33 6.37 31.32 0.20 -1.13 16 5 C -0.14 -2.32 6.36 31.32 0.20 -2.12 16 6 C 0.13 2.67 3.10 46.06 0.14 2.81 16 7 H 0.09 2.01 7.16 -2.39 -0.02 2.00 16 8 N -0.98 -22.93 2.71 -487.90 -1.32 -24.25 16 9 C 0.11 1.90 5.12 86.38 0.44 2.34 16 10 C 0.04 0.56 6.94 71.98 0.50 1.06 16 11 O -0.60 -12.32 10.06 -148.98 -1.50 -13.81 16 12 S 2.62 88.17 5.23 -56.49 -0.30 87.88 16 13 O -1.00 -38.80 16.72 -127.65 -2.13 -40.94 16 14 O -0.99 -38.98 16.55 -127.65 -2.11 -41.10 16 15 C -0.61 -21.27 5.91 71.98 0.43 -20.85 16 16 C -0.10 -4.62 5.16 30.59 0.16 -4.46 16 17 C 0.04 2.07 4.97 29.85 0.15 2.22 16 18 C -0.56 -32.74 9.11 25.60 0.23 -32.51 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 20 C 0.00 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 22 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C -0.13 -1.85 4.83 31.88 0.15 -1.70 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.08 0.74 7.84 -2.39 -0.02 0.72 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.20 6.79 -2.39 -0.02 1.18 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.13 1.41 6.88 -2.39 -0.02 1.39 16 35 H 0.08 1.85 6.86 -2.39 -0.02 1.83 16 36 H 0.08 0.88 5.13 -2.38 -0.01 0.86 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.40 5.39 9.12 -74.06 -0.68 4.72 16 39 H 0.17 5.47 4.75 -2.39 -0.01 5.46 16 40 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 1.05 4.89 -2.39 -0.01 1.04 16 Total: -1.00 -77.80 372.64 -1.08 -78.89 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.28 Total: 17.62 kcal Atomic # 6 Polarization: -59.10 SS G_CDS: 3.69 Total: -55.41 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -1.04 Total: -80.16 kcal Atomic # 8 Polarization: -90.10 SS G_CDS: -5.75 Total: -95.85 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 88.17 SS G_CDS: -0.30 Total: 87.88 kcal Total: -77.80 -1.08 -78.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452016953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.751 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds