Wall clock time and date at job start Tue Mar 31 2020 13:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47294 * 2 1 4 4 O 1.42892 * 109.46978 * 179.97438 * 3 2 1 5 5 C 1.35834 * 117.00090 * 179.97438 * 4 3 2 6 6 C 1.38870 * 119.89784 * 359.97438 * 5 4 3 7 7 C 1.37738 * 120.17500 * 179.74246 * 6 5 4 8 8 C 1.39993 * 119.97216 * 0.57062 * 7 6 5 9 9 C 1.46948 * 120.09890 * 179.69902 * 8 7 6 10 10 C 1.35138 * 119.99846 * 315.43965 * 9 8 7 11 11 C 1.41805 * 120.00572 * 347.05800 * 10 9 8 12 12 O 1.21788 * 119.99305 * 353.84797 * 11 10 9 13 13 N 1.34770 * 120.00425 * 173.84784 * 11 10 9 14 14 C 1.46502 * 119.99926 * 0.02562 * 13 11 10 15 15 C 1.36750 * 119.99840 * 179.97438 * 13 11 10 16 16 H 1.07995 * 120.00034 * 30.69412 * 15 13 11 17 17 C 1.39095 * 119.99789 * 210.69474 * 15 13 11 18 18 N 1.31345 * 120.00220 * 7.28144 * 17 15 13 19 19 Si 1.86800 * 119.99909 * 187.28682 * 17 15 13 20 20 H 1.48499 * 109.47256 * 59.99324 * 19 17 15 21 21 H 1.48501 * 109.47130 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46733 * 299.99580 * 19 17 15 23 23 C 1.39996 * 119.80062 * 359.43362 * 8 7 6 24 24 C 1.38083 * 119.82684 * 0.26923 * 23 8 7 25 25 O 1.35996 * 119.98950 * 180.02562 * 24 23 8 26 26 C 1.42899 * 116.99724 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47409 * 300.01148 * 1 2 3 28 28 H 1.09009 * 109.46871 * 60.00833 * 1 2 3 29 29 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47224 * 239.99129 * 2 1 3 31 31 H 1.09007 * 109.46447 * 119.99489 * 2 1 3 32 32 H 1.08995 * 109.46993 * 59.99440 * 3 2 1 33 33 H 1.08999 * 109.46491 * 299.99590 * 3 2 1 34 34 H 1.08001 * 119.91041 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.01492 * 180.27903 * 7 6 5 36 36 H 1.07996 * 120.00161 * 135.44367 * 9 8 7 37 37 H 1.07998 * 120.00009 * 167.32994 * 10 9 8 38 38 H 1.08994 * 109.47580 * 86.69217 * 14 13 11 39 39 H 1.08999 * 109.46693 * 206.69531 * 14 13 11 40 40 H 1.09002 * 109.46748 * 326.68726 * 14 13 11 41 41 H 0.96998 * 120.00117 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.08375 * 180.29727 * 23 8 7 43 43 H 1.09000 * 109.47529 * 60.00006 * 26 25 24 44 44 H 1.09003 * 109.47000 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47357 * 300.00092 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0857 2.6526 0.0001 6 6 3.3274 3.8160 -0.0014 7 6 3.9468 5.0462 0.0035 8 6 5.3445 5.1255 -0.0021 9 6 6.0082 6.4365 -0.0036 10 6 5.5662 7.4167 -0.8221 11 6 4.6553 7.1123 -1.8655 12 8 4.3581 5.9539 -2.0955 13 7 4.1187 8.1048 -2.6025 14 6 4.4767 9.4983 -2.3261 15 6 3.2407 7.8111 -3.6090 16 1 2.6022 6.9435 -3.5325 17 6 3.1701 8.6299 -4.7312 18 7 4.0411 9.5997 -4.8925 19 14 1.8365 8.3502 -6.0090 20 1 0.5028 8.4975 -5.3728 21 1 1.9785 9.3483 -7.0993 22 1 1.9685 6.9820 -6.5708 23 6 6.1080 3.9520 -0.0006 24 6 5.4784 2.7231 0.0008 25 8 6.2168 1.5811 0.0028 26 6 7.6383 1.7277 0.0028 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 2.2490 3.7559 -0.0018 35 1 3.3545 5.9493 0.0068 36 1 6.8493 6.6167 0.6494 37 1 5.9099 8.4312 -0.6844 38 1 5.3819 9.7567 -2.8756 39 1 3.6624 10.1516 -2.6395 40 1 4.6520 9.6233 -1.2576 41 1 3.9917 10.1708 -5.6749 42 1 7.1866 4.0079 0.0000 43 1 7.9468 2.2775 0.8920 44 1 8.1051 0.7427 0.0041 45 1 7.9472 2.2746 -0.8879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491349765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:59 Heat of formation + Delta-G solvation = -47.588823 kcal Electronic energy + Delta-G solvation = -26869.019582 eV Core-core repulsion = 23046.891683 eV Total energy + Delta-G solvation = -3822.127899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17887 -38.81410 -38.27194 -36.64999 -34.71142 -33.91790 -32.50370 -31.65239 -29.88251 -28.97717 -26.92306 -26.57222 -26.19561 -24.77504 -22.87510 -22.43018 -20.95170 -20.80333 -18.45850 -17.77093 -17.04716 -16.66895 -16.29575 -16.19461 -15.92788 -15.35932 -14.86219 -14.61841 -14.19733 -14.13270 -13.96612 -13.84639 -13.36426 -13.27480 -12.96739 -12.39864 -12.36022 -12.12148 -12.09230 -11.87787 -11.58204 -11.40484 -11.35024 -11.29188 -11.19812 -10.94463 -10.87213 -10.67179 -10.62062 -10.51654 -10.40069 -10.31161 -9.07932 -8.82074 -8.33887 -8.17561 -7.58255 -6.87444 -6.40358 -3.94227 1.32336 1.92262 2.46115 3.17947 3.20559 3.24580 3.42519 3.58552 4.09598 4.30114 4.47754 4.83566 4.84454 5.01358 5.12220 5.14179 5.16114 5.26441 5.30220 5.33395 5.34530 5.38728 5.51846 5.57682 5.65515 5.70664 5.78458 5.83035 5.93699 5.98670 6.00854 6.07420 6.15341 6.33235 6.51415 6.72026 6.76342 6.82030 6.95014 7.13741 7.15503 7.21789 7.40563 7.47171 7.97750 8.15695 8.48021 9.17547 9.36902 10.03122 10.63365 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.003808 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.052710 B = 7350.572270 C = 9062.042109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.058 3.942 4 O -0.310 6.310 5 C 0.100 3.900 6 C -0.183 4.183 7 C -0.021 4.021 8 C -0.035 4.035 9 C -0.080 4.080 10 C -0.172 4.172 11 C 0.457 3.543 12 O -0.577 6.577 13 N -0.431 5.431 14 C 0.107 3.893 15 C -0.297 4.297 16 H 0.097 0.903 17 C 0.032 3.968 18 N -0.875 5.875 19 Si 0.927 3.073 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.271 1.271 23 C -0.159 4.159 24 C 0.077 3.923 25 O -0.313 6.313 26 C 0.030 3.970 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.270 0.730 42 H 0.127 0.873 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -9.610 11.624 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.018 4.018 4 O -0.224 6.224 5 C 0.055 3.945 6 C -0.202 4.202 7 C -0.040 4.040 8 C -0.036 4.036 9 C -0.101 4.101 10 C -0.193 4.193 11 C 0.249 3.751 12 O -0.463 6.463 13 N -0.148 5.148 14 C -0.037 4.037 15 C -0.426 4.426 16 H 0.114 0.886 17 C -0.172 4.172 18 N -0.513 5.513 19 Si 0.754 3.246 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.178 4.178 24 C 0.032 3.968 25 O -0.228 6.228 26 C -0.066 4.066 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.639 -10.338 11.304 15.332 hybrid contribution -0.361 0.723 -1.000 1.286 sum 0.278 -9.615 10.303 14.096 Atomic orbital electron populations 1.21692 0.94520 1.02191 1.02277 1.21452 0.95755 0.95242 1.03476 1.22799 0.79357 0.98249 1.01354 1.86029 1.20348 1.26729 1.89341 1.18182 0.88834 0.84627 1.02870 1.20782 0.99263 0.91535 1.08594 1.20767 0.93257 0.96443 0.93520 1.18462 0.92876 0.92024 1.00203 1.21979 0.97923 0.92055 0.98172 1.22436 1.01359 0.99006 0.96543 1.17080 0.84986 0.86008 0.86984 1.90741 1.64223 1.18731 1.72647 1.43651 1.37291 1.04757 1.29108 1.21534 1.02074 0.84197 0.95850 1.19591 1.14544 1.12205 0.96251 0.88564 1.25499 0.97741 0.96233 0.97762 1.69904 1.33891 1.18462 1.29034 0.85977 0.80546 0.78435 0.79673 1.19768 1.20835 1.19641 1.20977 0.99343 0.90572 1.06909 1.17863 0.87959 0.85553 1.05400 1.86103 1.18065 1.28621 1.89983 1.22947 0.79564 1.03055 1.01033 0.92453 0.92278 0.91990 0.90939 0.91078 0.92410 0.92068 0.85600 0.86414 0.86101 0.86245 0.92658 0.91232 0.95189 0.91965 0.85488 0.93164 0.88884 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.29 6.30 -26.73 -0.17 -1.46 16 3 C 0.06 0.77 4.74 37.16 0.18 0.94 16 4 O -0.31 -5.32 9.90 -33.89 -0.34 -5.65 16 5 C 0.10 1.85 6.71 -38.90 -0.26 1.59 16 6 C -0.18 -3.33 9.01 -39.53 -0.36 -3.69 16 7 C -0.02 -0.41 6.72 -39.11 -0.26 -0.67 16 8 C -0.04 -0.66 4.41 -105.05 -0.46 -1.12 16 9 C -0.08 -1.36 9.79 -37.16 -0.36 -1.72 16 10 C -0.17 -3.31 8.87 -39.32 -0.35 -3.66 16 11 C 0.46 11.09 6.51 -14.90 -0.10 10.99 16 12 O -0.58 -15.51 12.00 5.11 0.06 -15.45 16 13 N -0.43 -10.97 2.98 -125.41 -0.37 -11.34 16 14 C 0.11 2.35 8.25 59.85 0.49 2.84 16 15 C -0.30 -8.19 9.10 -15.04 -0.14 -8.33 16 16 H 0.10 2.76 7.55 -52.49 -0.40 2.36 16 17 C 0.03 0.84 5.15 -17.44 -0.09 0.75 16 18 N -0.87 -23.16 10.94 55.50 0.61 -22.55 16 19 Si 0.93 20.61 29.56 -169.99 -5.02 15.58 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.16 -2.77 8.78 -38.98 -0.34 -3.11 16 24 C 0.08 1.40 6.69 -39.19 -0.26 1.14 16 25 O -0.31 -5.25 10.27 -34.40 -0.35 -5.61 16 26 C 0.03 0.35 9.81 101.05 0.99 1.34 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 33 H 0.06 0.83 7.65 -51.93 -0.40 0.43 16 34 H 0.13 2.01 6.27 -52.49 -0.33 1.68 16 35 H 0.12 2.35 7.20 -52.48 -0.38 1.97 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 1.98 6.29 -52.49 -0.33 1.65 16 38 H 0.05 1.25 7.69 -51.93 -0.40 0.85 16 39 H 0.07 1.59 7.16 -51.93 -0.37 1.22 16 40 H 0.03 0.54 6.37 -51.93 -0.33 0.21 16 41 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 42 H 0.13 1.86 6.28 -52.48 -0.33 1.53 16 43 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -32.61 368.37 -7.54 -40.16 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.55 Total: 4.36 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.12 Total: -5.05 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.23 Total: -33.89 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.63 Total: -26.71 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.61 -7.54 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491349765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.434 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds