Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47294 * 2 1 4 4 O 1.42892 * 109.46978 * 179.97438 * 3 2 1 5 5 C 1.35834 * 117.00090 * 179.97438 * 4 3 2 6 6 C 1.38870 * 119.89784 * 359.97438 * 5 4 3 7 7 C 1.37738 * 120.17500 * 179.74246 * 6 5 4 8 8 C 1.39993 * 119.97216 * 0.57062 * 7 6 5 9 9 C 1.46948 * 120.09890 * 179.69902 * 8 7 6 10 10 C 1.35138 * 119.99846 * 315.43965 * 9 8 7 11 11 C 1.41805 * 120.00572 * 347.05800 * 10 9 8 12 12 O 1.21788 * 119.99305 * 353.84797 * 11 10 9 13 13 N 1.34770 * 120.00425 * 173.84784 * 11 10 9 14 14 C 1.46502 * 119.99926 * 0.02562 * 13 11 10 15 15 C 1.36750 * 119.99840 * 179.97438 * 13 11 10 16 16 H 1.07995 * 120.00034 * 30.69412 * 15 13 11 17 17 C 1.39095 * 119.99789 * 210.69474 * 15 13 11 18 18 N 1.31345 * 120.00220 * 7.28144 * 17 15 13 19 19 Si 1.86800 * 119.99909 * 187.28682 * 17 15 13 20 20 H 1.48499 * 109.47256 * 59.99324 * 19 17 15 21 21 H 1.48501 * 109.47130 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46733 * 299.99580 * 19 17 15 23 23 C 1.39996 * 119.80062 * 359.43362 * 8 7 6 24 24 C 1.38083 * 119.82684 * 0.26923 * 23 8 7 25 25 O 1.35996 * 119.98950 * 180.02562 * 24 23 8 26 26 C 1.42899 * 116.99724 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47409 * 300.01148 * 1 2 3 28 28 H 1.09009 * 109.46871 * 60.00833 * 1 2 3 29 29 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47224 * 239.99129 * 2 1 3 31 31 H 1.09007 * 109.46447 * 119.99489 * 2 1 3 32 32 H 1.08995 * 109.46993 * 59.99440 * 3 2 1 33 33 H 1.08999 * 109.46491 * 299.99590 * 3 2 1 34 34 H 1.08001 * 119.91041 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.01492 * 180.27903 * 7 6 5 36 36 H 1.07996 * 120.00161 * 135.44367 * 9 8 7 37 37 H 1.07998 * 120.00009 * 167.32994 * 10 9 8 38 38 H 1.08994 * 109.47580 * 86.69217 * 14 13 11 39 39 H 1.08999 * 109.46693 * 206.69531 * 14 13 11 40 40 H 1.09002 * 109.46748 * 326.68726 * 14 13 11 41 41 H 0.96998 * 120.00117 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.08375 * 180.29727 * 23 8 7 43 43 H 1.09000 * 109.47529 * 60.00006 * 26 25 24 44 44 H 1.09003 * 109.47000 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47357 * 300.00092 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0857 2.6526 0.0001 6 6 3.3274 3.8160 -0.0014 7 6 3.9468 5.0462 0.0035 8 6 5.3445 5.1255 -0.0021 9 6 6.0082 6.4365 -0.0036 10 6 5.5662 7.4167 -0.8221 11 6 4.6553 7.1123 -1.8655 12 8 4.3581 5.9539 -2.0955 13 7 4.1187 8.1048 -2.6025 14 6 4.4767 9.4983 -2.3261 15 6 3.2407 7.8111 -3.6090 16 1 2.6022 6.9435 -3.5325 17 6 3.1701 8.6299 -4.7312 18 7 4.0411 9.5997 -4.8925 19 14 1.8365 8.3502 -6.0090 20 1 0.5028 8.4975 -5.3728 21 1 1.9785 9.3483 -7.0993 22 1 1.9685 6.9820 -6.5708 23 6 6.1080 3.9520 -0.0006 24 6 5.4784 2.7231 0.0008 25 8 6.2168 1.5811 0.0028 26 6 7.6383 1.7277 0.0028 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 2.2490 3.7559 -0.0018 35 1 3.3545 5.9493 0.0068 36 1 6.8493 6.6167 0.6494 37 1 5.9099 8.4312 -0.6844 38 1 5.3819 9.7567 -2.8756 39 1 3.6624 10.1516 -2.6395 40 1 4.6520 9.6233 -1.2576 41 1 3.9917 10.1708 -5.6749 42 1 7.1866 4.0079 0.0000 43 1 7.9468 2.2775 0.8920 44 1 8.1051 0.7427 0.0041 45 1 7.9472 2.2746 -0.8879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491349765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = -66.427565 kcal Electronic energy + Delta-G solvation = -26869.836492 eV Core-core repulsion = 23046.891683 eV Total energy + Delta-G solvation = -3822.944809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53489 -40.54226 -39.50439 -38.09148 -36.50447 -34.93992 -34.04537 -33.51011 -31.25609 -30.30586 -28.34697 -27.88827 -27.45479 -26.51917 -24.44957 -23.53860 -22.41161 -21.98036 -19.92913 -19.24991 -18.83055 -18.33041 -17.65715 -17.40169 -17.32866 -16.65506 -16.44266 -15.96930 -15.93129 -15.56027 -15.32996 -14.96012 -14.92057 -14.59805 -14.20053 -13.93274 -13.66086 -13.51637 -13.32199 -13.13602 -13.07931 -12.98042 -12.81666 -12.70298 -12.43545 -12.41854 -12.24127 -12.16656 -12.04466 -11.83767 -11.80674 -11.54523 -11.00433 -10.30929 -10.16793 -9.66906 -9.40192 -8.37840 -8.31219 -5.99990 -0.12300 0.50684 1.01141 1.37901 1.41674 1.48303 2.23661 2.26702 2.42218 2.62848 2.89717 3.21078 3.29171 3.80473 3.84616 3.92135 4.03356 4.10006 4.24232 4.28319 4.33685 4.40171 4.44103 4.49307 4.52528 4.54291 4.62440 4.71931 4.74871 4.77904 4.83352 5.00543 5.07798 5.10411 5.15977 5.26266 5.32770 5.34054 5.39399 5.42606 5.49033 5.77231 5.78848 6.16815 6.18028 6.56095 6.68577 7.21544 7.50324 8.14369 8.67161 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.003808 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.052710 B = 7350.572270 C = 9062.042109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.050 3.950 4 O -0.323 6.323 5 C 0.087 3.913 6 C -0.191 4.191 7 C -0.039 4.039 8 C -0.061 4.061 9 C -0.037 4.037 10 C -0.204 4.204 11 C 0.457 3.543 12 O -0.612 6.612 13 N -0.456 5.456 14 C 0.119 3.881 15 C -0.334 4.334 16 H 0.068 0.932 17 C -0.002 4.002 18 N -0.895 5.895 19 Si 0.986 3.014 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.281 1.281 23 C -0.155 4.155 24 C 0.067 3.933 25 O -0.331 6.331 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.174 0.826 37 H 0.150 0.850 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.274 0.726 42 H 0.158 0.842 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -10.181 12.964 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.025 4.025 4 O -0.238 6.238 5 C 0.041 3.959 6 C -0.210 4.210 7 C -0.058 4.058 8 C -0.062 4.062 9 C -0.058 4.058 10 C -0.224 4.224 11 C 0.251 3.749 12 O -0.501 6.501 13 N -0.174 5.174 14 C -0.024 4.024 15 C -0.463 4.463 16 H 0.086 0.914 17 C -0.204 4.204 18 N -0.533 5.533 19 Si 0.809 3.191 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.206 1.206 23 C -0.174 4.174 24 C 0.022 3.978 25 O -0.246 6.246 26 C -0.076 4.076 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.192 0.808 37 H 0.168 0.832 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.176 0.824 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.833 -10.899 12.666 16.810 hybrid contribution -0.640 0.651 -1.250 1.548 sum 1.193 -10.248 11.416 15.387 Atomic orbital electron populations 1.21687 0.92673 1.03380 1.02541 1.21474 0.97202 0.93263 1.03481 1.23090 0.77612 1.00275 1.01502 1.86020 1.22320 1.26258 1.89164 1.18449 0.89608 0.85031 1.02771 1.20940 1.00067 0.91434 1.08563 1.20779 0.94038 0.96219 0.94741 1.18814 0.92846 0.93563 1.00965 1.22543 0.96952 0.90003 0.96261 1.22367 1.01811 1.01313 0.96912 1.17895 0.84446 0.85314 0.87247 1.90715 1.65371 1.20272 1.73756 1.43833 1.38014 1.06183 1.29359 1.21452 1.00606 0.82269 0.98081 1.19486 1.16195 1.12458 0.98186 0.91376 1.26162 0.99535 0.95826 0.98882 1.69973 1.34846 1.18894 1.29585 0.85116 0.78475 0.77885 0.77603 1.18912 1.19364 1.20627 1.21266 1.00796 0.89696 1.05599 1.18125 0.88270 0.86468 1.04913 1.86087 1.20526 1.28218 1.89767 1.23308 0.77007 1.05260 1.01988 0.91668 0.92571 0.90332 0.91507 0.90483 0.91195 0.92950 0.84525 0.87989 0.80846 0.83220 0.93830 0.92995 0.91141 0.91672 0.82414 0.91179 0.86221 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.12 -2.39 6.30 30.59 0.19 -2.19 16 3 C 0.05 1.33 4.74 71.98 0.34 1.67 16 4 O -0.32 -11.13 9.90 -77.66 -0.77 -11.90 16 5 C 0.09 3.23 6.71 22.71 0.15 3.38 16 6 C -0.19 -7.13 9.01 22.30 0.20 -6.93 16 7 C -0.04 -1.54 6.72 22.58 0.15 -1.38 16 8 C -0.06 -2.21 4.41 -20.14 -0.09 -2.30 16 9 C -0.04 -1.14 9.79 23.84 0.23 -0.91 16 10 C -0.20 -7.43 8.87 22.44 0.20 -7.23 16 11 C 0.46 22.43 6.51 85.12 0.55 22.99 16 12 O -0.61 -33.90 12.00 -4.63 -0.06 -33.96 16 13 N -0.46 -23.75 2.98 -668.87 -2.00 -25.75 16 14 C 0.12 5.23 8.25 127.77 1.05 6.28 16 15 C -0.33 -19.20 9.10 84.13 0.77 -18.43 16 16 H 0.07 4.16 7.55 -2.91 -0.02 4.14 16 17 C 0.00 -0.10 5.15 84.97 0.44 0.34 16 18 N -0.89 -48.09 10.94 21.69 0.24 -47.86 16 19 Si 0.99 43.15 29.56 68.60 2.03 45.18 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.15 -5.08 8.78 22.66 0.20 -4.88 16 24 C 0.07 2.39 6.69 22.52 0.15 2.54 16 25 O -0.33 -10.61 10.27 -79.48 -0.82 -11.43 16 26 C 0.02 0.39 9.81 113.37 1.11 1.50 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.07 1.66 7.65 -2.39 -0.02 1.64 16 33 H 0.05 1.46 7.65 -2.39 -0.02 1.44 16 34 H 0.14 4.55 6.27 -2.91 -0.02 4.53 16 35 H 0.10 4.24 7.20 -2.91 -0.02 4.22 16 36 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.15 4.49 6.29 -2.91 -0.02 4.47 16 38 H 0.04 1.98 7.69 -2.39 -0.02 1.96 16 39 H 0.05 2.41 7.16 -2.39 -0.02 2.40 16 40 H 0.07 2.44 6.37 -2.39 -0.02 2.43 16 41 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.16 4.03 6.28 -2.91 -0.02 4.01 16 43 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 44 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 Total: -1.00 -74.01 368.37 5.99 -68.02 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.99 Total: 24.81 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 6.37 Total: -7.12 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.76 Total: -73.61 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -1.64 Total: -57.29 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.01 5.99 -68.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491349765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -74.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds