Wall clock time and date at job start Tue Mar 31 2020 13:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99818 * 2 1 4 4 C 1.52998 * 109.47025 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47021 * 64.99972 * 4 3 2 6 6 C 1.36744 * 120.00095 * 269.99621 * 5 4 3 7 7 H 1.07999 * 120.00289 * 144.58722 * 6 5 4 8 8 C 1.39077 * 119.99885 * 324.59640 * 6 5 4 9 9 N 1.31359 * 120.00099 * 156.86068 * 8 6 5 10 10 Si 1.86794 * 119.99988 * 336.86371 * 8 6 5 11 11 H 1.48501 * 109.47484 * 95.35943 * 10 8 6 12 12 H 1.48500 * 109.47293 * 215.36200 * 10 8 6 13 13 H 1.48500 * 109.47081 * 335.36213 * 10 8 6 14 14 C 1.34772 * 120.00182 * 90.00070 * 5 4 3 15 15 O 1.21847 * 120.00252 * 355.13339 * 14 5 4 16 16 C 1.41344 * 120.00246 * 175.13628 * 14 5 4 17 17 C 1.35788 * 120.00324 * 184.89255 * 16 14 5 18 18 C 1.41515 * 120.00086 * 185.24464 * 17 16 14 19 19 C 1.38035 * 126.10552 * 354.83500 * 18 17 16 20 20 C 1.40290 * 106.52119 * 179.97438 * 19 18 17 21 21 C 1.35184 * 107.21588 * 359.97438 * 20 19 18 22 22 C 1.50692 * 125.47687 * 179.97438 * 21 20 19 23 23 H 1.08996 * 115.56743 * 334.31159 * 22 21 20 24 24 C 1.53005 * 117.49513 * 188.61955 * 22 21 20 25 25 C 1.53002 * 117.49863 * 119.99955 * 22 21 20 26 26 H 1.09008 * 117.49688 * 359.97438 * 25 22 21 27 27 C 1.52999 * 117.50068 * 214.97629 * 25 22 21 28 28 O 1.34033 * 109.04035 * 0.24021 * 21 20 19 29 29 H 1.09008 * 109.47062 * 300.00253 * 1 2 3 30 30 H 1.08994 * 109.47497 * 60.00034 * 1 2 3 31 31 H 1.09000 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47635 * 59.99755 * 3 2 1 33 33 H 1.09006 * 109.47285 * 299.99603 * 3 2 1 34 34 H 1.08995 * 109.47265 * 305.00024 * 4 3 2 35 35 H 1.09007 * 109.46984 * 184.99283 * 4 3 2 36 36 H 0.96996 * 119.99907 * 180.02562 * 9 8 6 37 37 H 1.08006 * 119.99487 * 4.89042 * 16 14 5 38 38 H 1.08003 * 119.99892 * 5.25096 * 17 16 14 39 39 H 1.07998 * 126.73931 * 359.95871 * 19 18 17 40 40 H 1.07997 * 126.39277 * 179.97438 * 20 19 18 41 41 H 1.09005 * 117.49804 * 145.02174 * 24 22 21 42 42 H 1.08998 * 117.50021 * 0.02562 * 24 22 21 43 43 H 1.09002 * 109.46845 * 60.00242 * 27 25 22 44 44 H 1.08994 * 109.47243 * 299.99850 * 27 25 22 45 45 H 1.09005 * 109.46882 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0966 -0.7951 -1.3368 7 1 3.8544 -1.3028 -2.2587 8 6 4.5313 -1.5239 -0.2350 9 7 4.2315 -2.7986 -0.1308 10 14 5.5415 -0.6902 1.0969 11 1 4.6450 -0.2512 2.1964 12 1 6.5452 -1.6467 1.6286 13 1 6.2373 0.4902 0.5244 14 6 4.2614 1.3337 -2.3218 15 8 4.0694 2.5361 -2.2761 16 6 4.7838 0.7457 -3.4962 17 6 5.1648 1.5305 -4.5369 18 6 5.5831 0.9395 -5.7527 19 6 5.7480 -0.4110 -5.9863 20 6 6.1700 -0.5368 -7.3183 21 6 6.2442 0.7106 -7.8341 22 6 6.6583 1.0515 -9.2423 23 1 7.3075 0.3248 -9.7307 24 6 6.8738 2.5288 -9.5772 25 6 5.6453 1.7934 -10.1165 26 1 4.6791 2.0346 -9.6732 27 6 5.6212 1.4585 -11.6093 28 8 5.8957 1.5956 -6.8898 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1766 0.0888 36 1 4.5344 -3.3068 0.6378 37 1 4.8800 -0.3278 -3.5659 38 1 5.1486 2.6057 -4.4365 39 1 5.5845 -1.2131 -5.2819 40 1 6.3939 -1.4583 -7.8352 41 1 7.6650 2.7740 -10.2859 42 1 6.7165 3.2540 -8.7788 43 1 5.3946 0.4005 -11.7406 44 1 6.5949 1.6787 -12.0468 45 1 4.8565 2.0577 -12.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493810711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:14 Heat of formation + Delta-G solvation = -6.421144 kcal Electronic energy + Delta-G solvation = -26231.738354 eV Core-core repulsion = 22411.395619 eV Total energy + Delta-G solvation = -3820.342735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33134 -39.16729 -37.90829 -37.10893 -35.02342 -33.81063 -32.51771 -32.05919 -30.02824 -29.25743 -27.61175 -25.88075 -25.14911 -24.15126 -22.57295 -21.82638 -21.17226 -20.69957 -19.70807 -18.64214 -17.20601 -16.79844 -16.45429 -15.89947 -15.83107 -15.59984 -14.88917 -14.75938 -14.55135 -14.44315 -13.88828 -13.66526 -13.63442 -13.30656 -12.92997 -12.70821 -12.64382 -12.52851 -12.29022 -12.01339 -11.87907 -11.71210 -11.66324 -11.55009 -11.13186 -10.86831 -10.82653 -10.75494 -10.29829 -10.16883 -10.03074 -9.92724 -9.36384 -9.24364 -9.06914 -8.65431 -7.92247 -7.36691 -6.54075 -3.99902 0.97093 2.30360 2.97700 3.01522 3.12969 3.21020 3.25642 3.65005 4.07643 4.22887 4.30374 4.41795 4.47691 4.58716 4.62547 4.98956 5.04012 5.12711 5.19495 5.34343 5.40507 5.48416 5.53689 5.60547 5.68483 5.75210 5.77967 5.81741 5.83191 5.87347 5.93371 6.00688 6.02867 6.06538 6.10532 6.17957 6.27858 6.40062 6.49659 6.67674 6.77891 7.00258 7.24243 7.42102 7.80495 8.00156 8.18659 8.90251 9.28729 9.63055 10.55663 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002799 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.872299 B =10000.462508 C =10484.702386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.097 3.903 5 N -0.431 5.431 6 C -0.328 4.328 7 H 0.107 0.893 8 C 0.075 3.925 9 N -0.840 5.840 10 Si 0.873 3.127 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.261 1.261 14 C 0.485 3.515 15 O -0.613 6.613 16 C -0.119 4.119 17 C -0.067 4.067 18 C 0.030 3.970 19 C -0.190 4.190 20 C -0.196 4.196 21 C 0.008 3.992 22 C -0.076 4.076 23 H 0.132 0.868 24 C -0.167 4.167 25 C -0.143 4.143 26 H 0.107 0.893 27 C -0.122 4.122 28 O -0.168 6.168 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.276 0.724 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 4.783 -13.001 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.026 4.026 5 N -0.148 5.148 6 C -0.455 4.455 7 H 0.125 0.875 8 C -0.134 4.134 9 N -0.473 5.473 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.185 1.185 14 C 0.280 3.720 15 O -0.503 6.503 16 C -0.139 4.139 17 C -0.089 4.089 18 C -0.019 4.019 19 C -0.210 4.210 20 C -0.216 4.216 21 C -0.043 4.043 22 C -0.094 4.094 23 H 0.150 0.850 24 C -0.204 4.204 25 C -0.161 4.161 26 H 0.126 0.874 27 C -0.179 4.179 28 O -0.065 6.065 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.174 0.826 40 H 0.165 0.835 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.554 5.271 -12.841 13.968 hybrid contribution 0.231 0.068 0.989 1.018 sum 1.785 5.339 -11.852 13.121 Atomic orbital electron populations 1.22655 0.82993 1.02102 0.98721 1.88223 1.17711 1.26479 1.95016 1.22823 0.94613 0.85338 0.99457 1.21804 0.92646 0.99101 0.89040 1.43667 1.54512 1.07097 1.09534 1.19016 1.45339 0.79021 1.02122 0.87547 1.25280 0.95640 0.95138 0.97375 1.69754 1.39317 1.08469 1.29775 0.87009 0.80661 0.80252 0.82021 1.19915 1.21306 1.18481 1.16806 0.83436 0.86090 0.85699 1.90694 1.60116 1.14737 1.84712 1.22167 0.97754 1.01179 0.92837 1.19966 0.99798 1.00630 0.88507 1.19902 1.05165 0.90404 0.86427 1.22326 1.05704 0.95823 0.97106 1.21334 1.07513 0.97173 0.95539 1.21387 1.05114 0.87692 0.90105 1.20542 1.03796 0.96847 0.88189 0.84989 1.23191 0.99817 0.93828 1.03584 1.22525 0.95212 1.03121 0.95235 0.87439 1.21380 1.02098 1.01811 0.92626 1.83961 1.66325 1.36967 1.19228 0.95225 0.94881 0.90068 0.93854 0.93071 0.90725 0.89490 0.91350 0.84579 0.84931 0.82566 0.83517 0.88042 0.88072 0.91905 0.92360 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.69 10.18 -35.23 -0.36 -8.05 16 3 C 0.06 1.11 6.28 37.16 0.23 1.35 16 4 C 0.10 2.16 4.62 -4.04 -0.02 2.15 16 5 N -0.43 -10.45 2.18 -118.14 -0.26 -10.71 16 6 C -0.33 -8.41 8.36 -15.05 -0.13 -8.54 16 7 H 0.11 2.84 6.93 -52.49 -0.36 2.48 16 8 C 0.08 1.95 5.30 -17.44 -0.09 1.86 16 9 N -0.84 -22.65 13.95 55.50 0.77 -21.88 16 10 Si 0.87 20.12 25.00 -169.99 -4.25 15.87 16 11 H -0.27 -6.07 6.66 56.52 0.38 -5.69 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.49 11.55 7.38 -15.08 -0.11 11.44 16 15 O -0.61 -15.46 15.76 5.06 0.08 -15.38 16 16 C -0.12 -2.49 8.59 -39.28 -0.34 -2.83 16 17 C -0.07 -1.29 9.50 -39.21 -0.37 -1.66 16 18 C 0.03 0.53 7.03 -38.41 -0.27 0.26 16 19 C -0.19 -3.10 10.22 -38.88 -0.40 -3.49 16 20 C -0.20 -2.78 10.76 -39.90 -0.43 -3.21 16 21 C 0.01 0.11 6.79 -35.40 -0.24 -0.13 16 22 C -0.08 -0.79 5.95 -91.77 -0.55 -1.33 16 23 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 24 C -0.17 -1.56 9.81 -26.73 -0.26 -1.83 16 25 C -0.14 -1.32 6.11 -90.62 -0.55 -1.88 16 26 H 0.11 1.13 8.14 -51.92 -0.42 0.70 16 27 C -0.12 -0.84 10.19 37.16 0.38 -0.46 16 28 O -0.17 -2.78 10.35 4.63 0.05 -2.73 16 29 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.70 3.04 -51.93 -0.16 1.55 16 35 H 0.09 1.83 7.49 -51.92 -0.39 1.45 16 36 H 0.28 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.14 2.79 5.12 -52.48 -0.27 2.52 16 38 H 0.13 2.57 7.49 -52.48 -0.39 2.18 16 39 H 0.16 2.45 7.17 -52.49 -0.38 2.07 16 40 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 42 H 0.10 1.07 7.94 -51.93 -0.41 0.66 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -30.26 376.97 -6.89 -37.15 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.58 Total: 6.72 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.03 Total: -6.67 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.52 Total: -32.59 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.23 Total: -26.17 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.25 Total: 15.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.26 -6.89 -37.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493810711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.729 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds