Wall clock time and date at job start Tue Mar 31 2020 13:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99818 * 2 1 4 4 C 1.52998 * 109.47025 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47021 * 64.99972 * 4 3 2 6 6 C 1.36744 * 120.00095 * 269.99621 * 5 4 3 7 7 H 1.07999 * 120.00289 * 144.58722 * 6 5 4 8 8 C 1.39077 * 119.99885 * 324.59640 * 6 5 4 9 9 N 1.31359 * 120.00099 * 156.86068 * 8 6 5 10 10 Si 1.86794 * 119.99988 * 336.86371 * 8 6 5 11 11 H 1.48501 * 109.47484 * 95.35943 * 10 8 6 12 12 H 1.48500 * 109.47293 * 215.36200 * 10 8 6 13 13 H 1.48500 * 109.47081 * 335.36213 * 10 8 6 14 14 C 1.34772 * 120.00182 * 90.00070 * 5 4 3 15 15 O 1.21847 * 120.00252 * 355.13339 * 14 5 4 16 16 C 1.41344 * 120.00246 * 175.13628 * 14 5 4 17 17 C 1.35788 * 120.00324 * 184.89255 * 16 14 5 18 18 C 1.41515 * 120.00086 * 185.24464 * 17 16 14 19 19 C 1.38035 * 126.10552 * 354.83500 * 18 17 16 20 20 C 1.40290 * 106.52119 * 179.97438 * 19 18 17 21 21 C 1.35184 * 107.21588 * 359.97438 * 20 19 18 22 22 C 1.50692 * 125.47687 * 179.97438 * 21 20 19 23 23 H 1.08996 * 115.56743 * 334.31159 * 22 21 20 24 24 C 1.53005 * 117.49513 * 188.61955 * 22 21 20 25 25 C 1.53002 * 117.49863 * 119.99955 * 22 21 20 26 26 H 1.09008 * 117.49688 * 359.97438 * 25 22 21 27 27 C 1.52999 * 117.50068 * 214.97629 * 25 22 21 28 28 O 1.34033 * 109.04035 * 0.24021 * 21 20 19 29 29 H 1.09008 * 109.47062 * 300.00253 * 1 2 3 30 30 H 1.08994 * 109.47497 * 60.00034 * 1 2 3 31 31 H 1.09000 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47635 * 59.99755 * 3 2 1 33 33 H 1.09006 * 109.47285 * 299.99603 * 3 2 1 34 34 H 1.08995 * 109.47265 * 305.00024 * 4 3 2 35 35 H 1.09007 * 109.46984 * 184.99283 * 4 3 2 36 36 H 0.96996 * 119.99907 * 180.02562 * 9 8 6 37 37 H 1.08006 * 119.99487 * 4.89042 * 16 14 5 38 38 H 1.08003 * 119.99892 * 5.25096 * 17 16 14 39 39 H 1.07998 * 126.73931 * 359.95871 * 19 18 17 40 40 H 1.07997 * 126.39277 * 179.97438 * 20 19 18 41 41 H 1.09005 * 117.49804 * 145.02174 * 24 22 21 42 42 H 1.08998 * 117.50021 * 0.02562 * 24 22 21 43 43 H 1.09002 * 109.46845 * 60.00242 * 27 25 22 44 44 H 1.08994 * 109.47243 * 299.99850 * 27 25 22 45 45 H 1.09005 * 109.46882 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0966 -0.7951 -1.3368 7 1 3.8544 -1.3028 -2.2587 8 6 4.5313 -1.5239 -0.2350 9 7 4.2315 -2.7986 -0.1308 10 14 5.5415 -0.6902 1.0969 11 1 4.6450 -0.2512 2.1964 12 1 6.5452 -1.6467 1.6286 13 1 6.2373 0.4902 0.5244 14 6 4.2614 1.3337 -2.3218 15 8 4.0694 2.5361 -2.2761 16 6 4.7838 0.7457 -3.4962 17 6 5.1648 1.5305 -4.5369 18 6 5.5831 0.9395 -5.7527 19 6 5.7480 -0.4110 -5.9863 20 6 6.1700 -0.5368 -7.3183 21 6 6.2442 0.7106 -7.8341 22 6 6.6583 1.0515 -9.2423 23 1 7.3075 0.3248 -9.7307 24 6 6.8738 2.5288 -9.5772 25 6 5.6453 1.7934 -10.1165 26 1 4.6791 2.0346 -9.6732 27 6 5.6212 1.4585 -11.6093 28 8 5.8957 1.5956 -6.8898 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1766 0.0888 36 1 4.5344 -3.3068 0.6378 37 1 4.8800 -0.3278 -3.5659 38 1 5.1486 2.6057 -4.4365 39 1 5.5845 -1.2131 -5.2819 40 1 6.3939 -1.4583 -7.8352 41 1 7.6650 2.7740 -10.2859 42 1 6.7165 3.2540 -8.7788 43 1 5.3946 0.4005 -11.7406 44 1 6.5949 1.6787 -12.0468 45 1 4.8565 2.0577 -12.1037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493810711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:13 Heat of formation + Delta-G solvation = -23.346343 kcal Electronic energy + Delta-G solvation = -26232.472286 eV Core-core repulsion = 22411.395619 eV Total energy + Delta-G solvation = -3821.076667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.60442 -40.98254 -38.75702 -38.63492 -36.82873 -35.37809 -34.00578 -33.78235 -31.55024 -30.28860 -28.71606 -27.28880 -26.91832 -25.62854 -24.03116 -23.00110 -22.37759 -21.61639 -21.02314 -20.42244 -18.73434 -18.54074 -17.87390 -17.48275 -17.14993 -17.05560 -16.38650 -16.33693 -16.10363 -15.52196 -15.38467 -15.35486 -14.70558 -14.46649 -14.40812 -14.18497 -13.92379 -13.84417 -13.61995 -13.28194 -13.15034 -13.10741 -12.82183 -12.75701 -12.53000 -12.38953 -12.37465 -11.97086 -11.78833 -11.71149 -11.40129 -11.10959 -11.03645 -10.67224 -10.57618 -10.44929 -9.81300 -8.74498 -8.49446 -5.99903 -0.51431 1.02856 1.21577 1.33299 1.42103 1.69057 1.75586 2.19392 2.46804 2.69010 2.85841 2.91141 3.17963 3.41938 3.77044 3.86062 3.88280 4.02885 4.03764 4.11652 4.15063 4.35261 4.35931 4.39934 4.41937 4.53702 4.54514 4.61295 4.70266 4.75597 4.82363 4.83915 4.89202 4.90890 4.96802 5.03335 5.10912 5.17629 5.20965 5.33263 5.41618 5.47029 5.51944 6.03063 6.11128 6.23099 6.38480 6.96543 7.38487 7.74402 8.64237 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.002799 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.872299 B =10000.462508 C =10484.702386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.060 3.940 4 C 0.088 3.912 5 N -0.445 5.445 6 C -0.328 4.328 7 H 0.082 0.918 8 C 0.041 3.959 9 N -0.880 5.880 10 Si 0.920 3.080 11 H -0.258 1.258 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.489 3.511 15 O -0.632 6.632 16 C -0.161 4.161 17 C -0.022 4.022 18 C -0.017 4.017 19 C -0.173 4.173 20 C -0.208 4.208 21 C 0.026 3.974 22 C -0.089 4.089 23 H 0.162 0.838 24 C -0.164 4.164 25 C -0.137 4.137 26 H 0.090 0.910 27 C -0.119 4.119 28 O -0.178 6.178 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.279 0.721 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 5.420 -15.040 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.034 4.034 5 N -0.162 5.162 6 C -0.455 4.455 7 H 0.100 0.900 8 C -0.165 4.165 9 N -0.516 5.516 10 Si 0.746 3.254 11 H -0.185 1.185 12 H -0.209 1.209 13 H -0.191 1.191 14 C 0.285 3.715 15 O -0.523 6.523 16 C -0.182 4.182 17 C -0.043 4.043 18 C -0.065 4.065 19 C -0.193 4.193 20 C -0.226 4.226 21 C -0.025 4.025 22 C -0.107 4.107 23 H 0.179 0.821 24 C -0.201 4.201 25 C -0.155 4.155 26 H 0.108 0.892 27 C -0.175 4.175 28 O -0.075 6.075 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.176 0.824 40 H 0.197 0.803 41 H 0.147 0.853 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.323 5.914 -14.873 16.174 hybrid contribution 0.022 -0.027 1.238 1.239 sum 2.345 5.887 -13.635 15.036 Atomic orbital electron populations 1.22856 0.80561 1.03107 1.00373 1.88158 1.20544 1.27404 1.95335 1.22775 0.93108 0.85185 1.00637 1.21963 0.94502 0.99016 0.87964 1.43671 1.55648 1.06548 1.10327 1.18768 1.45629 0.79694 1.01433 0.90013 1.25740 0.96182 0.95483 0.99073 1.69812 1.41149 1.09652 1.30976 0.86253 0.79577 0.79162 0.80369 1.18462 1.20870 1.19078 1.17170 0.82374 0.85848 0.86130 1.90656 1.60918 1.15484 1.85198 1.21902 1.01840 1.01241 0.93183 1.19961 0.95780 1.00144 0.88448 1.19702 1.09027 0.91049 0.86771 1.22613 1.03157 0.95299 0.98201 1.21708 1.07733 0.98610 0.94594 1.22307 1.01758 0.87528 0.90939 1.20894 1.05229 0.98399 0.86170 0.82067 1.23278 1.00699 0.92541 1.03541 1.22575 0.94245 1.02185 0.96517 0.89216 1.21397 1.03288 1.02297 0.90560 1.83961 1.66498 1.37744 1.19331 0.92476 0.94189 0.89501 0.90279 0.94036 0.91296 0.88778 0.91067 0.84707 0.85353 0.82440 0.80342 0.85349 0.89826 0.91323 0.90800 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.08 10.18 -148.98 -1.52 -18.60 16 3 C 0.06 2.40 6.28 71.98 0.45 2.85 16 4 C 0.09 3.94 4.62 86.38 0.40 4.34 16 5 N -0.44 -22.11 2.18 -645.84 -1.41 -23.52 16 6 C -0.33 -17.46 8.36 84.13 0.70 -16.76 16 7 H 0.08 4.64 6.93 -2.91 -0.02 4.62 16 8 C 0.04 2.19 5.30 84.97 0.45 2.64 16 9 N -0.88 -48.87 13.95 21.69 0.30 -48.56 16 10 Si 0.92 41.89 25.00 68.60 1.72 43.60 16 11 H -0.26 -11.09 6.66 99.48 0.66 -10.43 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 C 0.49 24.00 7.38 85.01 0.63 24.63 16 15 O -0.63 -32.45 15.76 -4.82 -0.08 -32.53 16 16 C -0.16 -7.04 8.59 22.47 0.19 -6.85 16 17 C -0.02 -0.86 9.50 22.51 0.21 -0.64 16 18 C -0.02 -0.59 7.03 23.03 0.16 -0.43 16 19 C -0.17 -5.54 10.22 22.72 0.23 -5.31 16 20 C -0.21 -5.41 10.76 22.06 0.24 -5.17 16 21 C 0.03 0.67 6.79 24.98 0.17 0.84 16 22 C -0.09 -1.57 5.95 -11.54 -0.07 -1.64 16 23 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 24 C -0.16 -2.61 9.81 30.60 0.30 -2.31 16 25 C -0.14 -2.17 6.11 -10.79 -0.07 -2.24 16 26 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 27 C -0.12 -1.21 10.19 71.98 0.73 -0.48 16 28 O -0.18 -5.76 10.35 -6.36 -0.07 -5.83 16 29 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 3.13 3.04 -2.39 -0.01 3.12 16 35 H 0.09 3.97 7.49 -2.38 -0.02 3.95 16 36 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.14 5.84 5.12 -2.91 -0.01 5.83 16 38 H 0.13 5.08 7.49 -2.91 -0.02 5.06 16 39 H 0.16 4.96 7.17 -2.91 -0.02 4.94 16 40 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.13 1.37 8.05 -2.38 -0.02 1.35 16 42 H 0.08 1.65 7.94 -2.39 -0.02 1.63 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.55 7.90 -2.39 -0.02 0.54 16 45 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -67.02 376.97 5.88 -61.13 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.95 Total: 28.72 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.99 Total: -4.41 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.11 Total: -72.09 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -1.66 Total: -56.96 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.72 Total: 43.60 kcal Total: -67.02 5.88 -61.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493810711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.788 kcal (2) G-P(sol) polarization free energy of solvation -67.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds