Wall clock time and date at job start Tue Mar 31 2020 13:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.49049 * 2 1 4 4 C 1.53097 * 109.47851 * 239.97747 * 2 1 3 5 5 C 1.53176 * 109.16172 * 182.40981 * 4 2 1 6 6 N 1.46496 * 109.54456 * 176.85042 * 5 4 2 7 7 S 1.65594 * 120.00674 * 95.43970 * 6 5 4 8 8 O 1.42096 * 104.28056 * 181.07282 * 7 6 5 9 9 O 1.42105 * 104.27604 * 308.92897 * 7 6 5 10 10 C 1.81395 * 104.44859 * 64.99999 * 7 6 5 11 11 C 1.53006 * 109.47077 * 180.02562 * 10 7 6 12 12 C 1.53000 * 109.47113 * 299.99897 * 11 10 7 13 13 C 1.52995 * 109.47252 * 59.99880 * 11 10 7 14 14 C 1.50704 * 109.46878 * 180.02562 * 11 10 7 15 15 H 1.07994 * 119.99952 * 0.83402 * 14 11 10 16 16 C 1.37876 * 119.99656 * 180.83249 * 14 11 10 17 17 N 1.31513 * 120.00185 * 194.57715 * 16 14 11 18 18 Si 1.86808 * 120.00117 * 14.58046 * 16 14 11 19 19 H 1.48502 * 109.46843 * 84.44964 * 18 16 14 20 20 H 1.48499 * 109.47060 * 204.45139 * 18 16 14 21 21 H 1.48495 * 109.46905 * 324.45123 * 18 16 14 22 22 C 1.53172 * 109.03910 * 56.97647 * 5 4 2 23 23 C 1.53097 * 109.16484 * 303.02109 * 22 5 4 24 24 H 1.09000 * 109.48095 * 177.59323 * 23 22 5 25 25 C 1.52997 * 109.48891 * 297.62068 * 23 22 5 26 26 O 1.42899 * 109.48174 * 120.03212 * 2 1 3 27 27 H 1.09005 * 109.46724 * 299.96720 * 1 2 3 28 28 H 1.09000 * 109.47447 * 59.96512 * 1 2 3 29 29 H 1.08998 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.52265 * 62.50006 * 4 2 1 31 31 H 1.08998 * 109.57122 * 302.34453 * 4 2 1 32 32 H 1.09006 * 109.53988 * 297.10867 * 5 4 2 33 33 H 0.97008 * 119.99543 * 275.44184 * 6 5 4 34 34 H 1.09003 * 109.47642 * 299.99978 * 10 7 6 35 35 H 1.08997 * 109.47297 * 60.00176 * 10 7 6 36 36 H 1.08996 * 109.46965 * 70.22828 * 12 11 10 37 37 H 1.09000 * 109.47316 * 190.23821 * 12 11 10 38 38 H 1.09007 * 109.47016 * 310.23641 * 12 11 10 39 39 H 1.09006 * 109.46753 * 60.00215 * 13 11 10 40 40 H 1.08997 * 109.46823 * 180.02562 * 13 11 10 41 41 H 1.08997 * 109.47162 * 299.99845 * 13 11 10 42 42 H 0.96999 * 120.00237 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.52264 * 183.11834 * 22 5 4 44 44 H 1.08999 * 109.52284 * 62.92360 * 22 5 4 45 45 H 1.09001 * 109.47371 * 179.97438 * 25 23 22 46 46 H 1.09007 * 109.47196 * 299.94525 * 25 23 22 47 47 H 1.09002 * 109.47735 * 59.94476 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5711 -0.7708 -1.2123 6 7 4.0657 -1.5257 -2.3662 7 16 4.5302 -0.7274 -3.7407 8 8 4.9183 -1.7627 -4.6332 9 8 3.4323 0.1239 -4.0394 10 6 5.9723 0.2483 -3.2320 11 6 6.4997 1.0414 -4.4295 12 6 6.9056 0.0739 -5.5431 13 6 5.4048 1.9789 -4.9425 14 6 7.6981 1.8515 -4.0070 15 1 8.0567 1.7950 -2.9899 16 6 8.3367 2.6648 -4.9190 17 7 9.5311 3.1444 -4.6491 18 14 7.5053 3.0854 -6.5381 19 1 6.5949 4.2420 -6.3412 20 1 8.5366 3.4336 -7.5483 21 1 6.7236 1.9151 -7.0118 22 6 4.0176 -1.4601 0.0806 23 6 3.4307 -0.7094 1.2789 24 1 3.7101 -1.2204 2.2003 25 6 3.9761 0.7199 1.3028 26 8 2.0066 -0.6742 1.1663 27 1 -0.3633 0.5134 0.8903 28 1 -0.3634 0.5144 -0.8896 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7148 -0.1842 -2.1399 31 1 1.6443 -1.7373 -1.2722 32 1 3.9689 0.2437 -1.2409 33 1 4.1212 -2.4933 -2.3252 34 1 5.6831 0.9380 -2.4389 35 1 6.7521 -0.4195 -2.8661 36 1 6.0129 -0.3804 -5.9730 37 1 7.4458 0.6178 -6.3179 38 1 7.5473 -0.7052 -5.1314 39 1 5.1156 2.6682 -4.1491 40 1 5.7804 2.5434 -5.7958 41 1 4.5383 1.3926 -5.2482 42 1 9.9803 3.7168 -5.2906 43 1 5.1059 -1.4497 0.1418 44 1 3.6613 -2.4901 0.0861 45 1 3.5577 1.2543 2.1557 46 1 5.0624 0.6930 1.3887 47 1 3.6971 1.2308 0.3812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581173299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:02 Heat of formation + Delta-G solvation = -115.522227 kcal Electronic energy + Delta-G solvation = -27292.832610 eV Core-core repulsion = 23603.202849 eV Total energy + Delta-G solvation = -3689.629761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19951 -36.77158 -36.75263 -35.82428 -35.46821 -33.55622 -31.98527 -31.49368 -28.77659 -27.47221 -26.88930 -26.41444 -25.05266 -23.18080 -22.33748 -20.17837 -19.54194 -18.81640 -17.58033 -16.96920 -16.38529 -16.19081 -15.68733 -15.55187 -15.23346 -15.00179 -14.71079 -14.28480 -14.06290 -13.45566 -13.19435 -13.10684 -12.91037 -12.80916 -12.50840 -12.38230 -12.33149 -12.12937 -11.91588 -11.73935 -11.67433 -11.58742 -11.55846 -11.35434 -11.22286 -11.12192 -11.01857 -10.79907 -10.24831 -10.18882 -10.09374 -10.04762 -9.68661 -9.45273 -9.04023 -8.77711 -8.50456 -6.22517 -4.20068 0.65746 2.98103 3.22812 3.32085 3.36569 3.56115 4.09219 4.31252 4.37759 4.46973 4.61175 4.67340 4.76818 4.85029 4.93676 5.07310 5.09730 5.11355 5.25196 5.28607 5.34806 5.45143 5.51568 5.55365 5.61518 5.74704 5.76780 5.85148 5.94520 5.95855 5.98977 6.07190 6.14431 6.19898 6.28098 6.40374 6.45657 6.66426 6.83132 6.99470 7.09048 7.09668 7.27645 7.59132 8.35240 8.79816 9.41477 10.89957 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.004156 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.948996 B = 6734.851944 C = 7144.836400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.066 0.934 4 C -0.168 4.168 5 C 0.152 3.848 6 N -1.122 6.122 7 S 2.589 3.411 8 O -0.964 6.964 9 O -0.962 6.962 10 C -0.575 4.575 11 C 0.055 3.945 12 C -0.170 4.170 13 C -0.181 4.181 14 C -0.508 4.508 15 H 0.078 0.922 16 C 0.078 3.922 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.246 1.246 22 C -0.157 4.157 23 C 0.091 3.909 24 H 0.106 0.894 25 C -0.195 4.195 26 O -0.375 6.375 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.413 0.587 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -8.047 11.058 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.083 0.917 4 C -0.208 4.208 5 C 0.044 3.956 6 N -0.878 5.878 7 S 2.686 3.314 8 O -0.954 6.954 9 O -0.952 6.952 10 C -0.708 4.708 11 C 0.052 3.948 12 C -0.228 4.228 13 C -0.238 4.238 14 C -0.547 4.547 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.525 5.525 18 Si 0.705 3.295 19 H -0.208 1.208 20 H -0.229 1.229 21 H -0.172 1.172 22 C -0.197 4.197 23 C 0.033 3.967 24 H 0.124 0.876 25 C -0.252 4.252 26 O -0.295 6.295 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.189 -7.915 10.275 19.224 hybrid contribution 0.463 0.288 -0.528 0.759 sum -13.726 -7.626 9.747 18.482 Atomic orbital electron populations 1.21756 0.92948 1.02870 1.02519 1.22120 0.95169 0.95679 0.84572 0.91656 1.22813 0.95520 1.02828 0.99592 1.20787 0.94075 0.95275 0.85451 1.55884 1.81564 1.18390 1.31924 1.05716 0.77293 0.75189 0.73176 1.93570 1.84723 1.55843 1.61265 1.93543 1.50684 1.68736 1.82243 1.30390 1.17316 1.12950 1.10187 1.18231 0.95546 0.92523 0.88523 1.22679 1.00738 0.99525 0.99838 1.22817 0.98187 1.01238 1.01577 1.20635 1.09850 1.25325 0.98882 0.90420 1.24960 0.94079 0.95580 0.97934 1.69931 1.12019 1.33616 1.36887 0.87448 0.78463 0.79518 0.84081 1.20794 1.22872 1.17205 1.22563 1.02190 1.00759 0.94152 1.22136 0.80894 0.95645 0.98066 0.87642 1.22547 1.02397 0.97144 1.03091 1.87968 1.20545 1.77747 1.43206 0.91873 0.90870 0.91906 0.89031 0.90558 0.89484 0.75399 0.85966 0.85416 0.94475 0.91417 0.92342 0.91832 0.92990 0.93154 0.92391 0.89750 0.90274 0.91528 0.90876 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.56 37.16 0.36 -0.89 16 2 C 0.08 0.83 2.94 -26.68 -0.08 0.76 16 3 H 0.07 0.64 6.34 -51.93 -0.33 0.32 16 4 C -0.17 -1.86 5.03 -26.59 -0.13 -1.99 16 5 C 0.15 1.68 2.34 -67.75 -0.16 1.53 16 6 N -1.12 -13.73 5.37 -4.74 -0.03 -13.75 16 7 S 2.59 43.20 4.42 -107.50 -0.48 42.72 16 8 O -0.96 -18.54 15.93 -57.54 -0.92 -19.45 16 9 O -0.96 -17.93 14.85 -57.54 -0.85 -18.79 16 10 C -0.58 -10.22 4.88 37.16 0.18 -10.04 16 11 C 0.05 1.23 0.52 -155.66 -0.08 1.15 16 12 C -0.17 -3.81 6.95 37.16 0.26 -3.55 16 13 C -0.18 -4.00 7.22 37.16 0.27 -3.73 16 14 C -0.51 -13.44 8.62 -34.44 -0.30 -13.74 16 15 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.08 2.16 5.31 -17.82 -0.09 2.06 16 17 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 18 Si 0.87 21.32 22.79 -169.99 -3.87 17.45 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.25 -5.64 4.67 56.52 0.26 -5.38 16 22 C -0.16 -1.41 5.17 -26.59 -0.14 -1.55 16 23 C 0.09 0.81 3.91 -26.68 -0.10 0.70 16 24 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.19 -1.69 8.65 37.16 0.32 -1.37 16 26 O -0.38 -3.96 10.24 -35.23 -0.36 -4.32 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.13 7.55 -51.93 -0.39 0.74 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.97 5.64 -51.93 -0.29 0.68 16 33 H 0.41 4.23 8.80 -34.47 -0.30 3.93 16 34 H 0.12 1.93 7.45 -51.92 -0.39 1.54 16 35 H 0.13 2.08 8.14 -51.93 -0.42 1.65 16 36 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16 37 H 0.07 1.56 4.32 -51.93 -0.22 1.34 16 38 H 0.06 1.23 8.11 -51.92 -0.42 0.81 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16 41 H 0.05 1.04 5.46 -51.93 -0.28 0.75 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 47 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -32.57 350.52 -7.82 -40.39 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.68 Total: 6.50 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 0.30 Total: -30.66 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.75 Total: -39.12 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.13 Total: -42.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -3.87 Total: 17.45 kcal Atomic # 16 Polarization: 43.20 SS G_CDS: -0.48 Total: 42.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.57 -7.82 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581173299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.128 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds