Wall clock time and date at job start Tue Mar 31 2020 13:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.49049 * 2 1 4 4 C 1.53097 * 109.47851 * 239.97747 * 2 1 3 5 5 C 1.53176 * 109.16172 * 182.40981 * 4 2 1 6 6 N 1.46496 * 109.54456 * 176.85042 * 5 4 2 7 7 S 1.65594 * 120.00674 * 95.43970 * 6 5 4 8 8 O 1.42096 * 104.28056 * 181.07282 * 7 6 5 9 9 O 1.42105 * 104.27604 * 308.92897 * 7 6 5 10 10 C 1.81395 * 104.44859 * 64.99999 * 7 6 5 11 11 C 1.53006 * 109.47077 * 180.02562 * 10 7 6 12 12 C 1.53000 * 109.47113 * 299.99897 * 11 10 7 13 13 C 1.52995 * 109.47252 * 59.99880 * 11 10 7 14 14 C 1.50704 * 109.46878 * 180.02562 * 11 10 7 15 15 H 1.07994 * 119.99952 * 0.83402 * 14 11 10 16 16 C 1.37876 * 119.99656 * 180.83249 * 14 11 10 17 17 N 1.31513 * 120.00185 * 194.57715 * 16 14 11 18 18 Si 1.86808 * 120.00117 * 14.58046 * 16 14 11 19 19 H 1.48502 * 109.46843 * 84.44964 * 18 16 14 20 20 H 1.48499 * 109.47060 * 204.45139 * 18 16 14 21 21 H 1.48495 * 109.46905 * 324.45123 * 18 16 14 22 22 C 1.53172 * 109.03910 * 56.97647 * 5 4 2 23 23 C 1.53097 * 109.16484 * 303.02109 * 22 5 4 24 24 H 1.09000 * 109.48095 * 177.59323 * 23 22 5 25 25 C 1.52997 * 109.48891 * 297.62068 * 23 22 5 26 26 O 1.42899 * 109.48174 * 120.03212 * 2 1 3 27 27 H 1.09005 * 109.46724 * 299.96720 * 1 2 3 28 28 H 1.09000 * 109.47447 * 59.96512 * 1 2 3 29 29 H 1.08998 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.52265 * 62.50006 * 4 2 1 31 31 H 1.08998 * 109.57122 * 302.34453 * 4 2 1 32 32 H 1.09006 * 109.53988 * 297.10867 * 5 4 2 33 33 H 0.97008 * 119.99543 * 275.44184 * 6 5 4 34 34 H 1.09003 * 109.47642 * 299.99978 * 10 7 6 35 35 H 1.08997 * 109.47297 * 60.00176 * 10 7 6 36 36 H 1.08996 * 109.46965 * 70.22828 * 12 11 10 37 37 H 1.09000 * 109.47316 * 190.23821 * 12 11 10 38 38 H 1.09007 * 109.47016 * 310.23641 * 12 11 10 39 39 H 1.09006 * 109.46753 * 60.00215 * 13 11 10 40 40 H 1.08997 * 109.46823 * 180.02562 * 13 11 10 41 41 H 1.08997 * 109.47162 * 299.99845 * 13 11 10 42 42 H 0.96999 * 120.00237 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.52264 * 183.11834 * 22 5 4 44 44 H 1.08999 * 109.52284 * 62.92360 * 22 5 4 45 45 H 1.09001 * 109.47371 * 179.97438 * 25 23 22 46 46 H 1.09007 * 109.47196 * 299.94525 * 25 23 22 47 47 H 1.09002 * 109.47735 * 59.94476 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5711 -0.7708 -1.2123 6 7 4.0657 -1.5257 -2.3662 7 16 4.5302 -0.7274 -3.7407 8 8 4.9183 -1.7627 -4.6332 9 8 3.4323 0.1239 -4.0394 10 6 5.9723 0.2483 -3.2320 11 6 6.4997 1.0414 -4.4295 12 6 6.9056 0.0739 -5.5431 13 6 5.4048 1.9789 -4.9425 14 6 7.6981 1.8515 -4.0070 15 1 8.0567 1.7950 -2.9899 16 6 8.3367 2.6648 -4.9190 17 7 9.5311 3.1444 -4.6491 18 14 7.5053 3.0854 -6.5381 19 1 6.5949 4.2420 -6.3412 20 1 8.5366 3.4336 -7.5483 21 1 6.7236 1.9151 -7.0118 22 6 4.0176 -1.4601 0.0806 23 6 3.4307 -0.7094 1.2789 24 1 3.7101 -1.2204 2.2003 25 6 3.9761 0.7199 1.3028 26 8 2.0066 -0.6742 1.1663 27 1 -0.3633 0.5134 0.8903 28 1 -0.3634 0.5144 -0.8896 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7148 -0.1842 -2.1399 31 1 1.6443 -1.7373 -1.2722 32 1 3.9689 0.2437 -1.2409 33 1 4.1212 -2.4933 -2.3252 34 1 5.6831 0.9380 -2.4389 35 1 6.7521 -0.4195 -2.8661 36 1 6.0129 -0.3804 -5.9730 37 1 7.4458 0.6178 -6.3179 38 1 7.5473 -0.7052 -5.1314 39 1 5.1156 2.6682 -4.1491 40 1 5.7804 2.5434 -5.7958 41 1 4.5383 1.3926 -5.2482 42 1 9.9803 3.7168 -5.2906 43 1 5.1059 -1.4497 0.1418 44 1 3.6613 -2.4901 0.0861 45 1 3.5577 1.2543 2.1557 46 1 5.0624 0.6930 1.3887 47 1 3.6971 1.2308 0.3812 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581173299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:01 Heat of formation + Delta-G solvation = -139.954926 kcal Electronic energy + Delta-G solvation = -27293.892092 eV Core-core repulsion = 23603.202849 eV Total energy + Delta-G solvation = -3690.689243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97029 -38.51592 -38.15758 -36.98867 -36.67618 -34.27099 -34.04931 -32.35847 -29.57389 -28.99092 -28.16398 -27.60589 -27.09422 -23.98731 -23.11810 -21.73290 -20.56579 -20.09379 -18.89281 -18.14320 -17.90255 -17.22477 -17.14785 -16.88652 -16.60857 -15.93084 -15.70887 -15.21321 -15.06290 -15.02741 -14.81749 -14.77370 -14.18756 -14.12027 -13.82206 -13.51405 -13.26192 -13.16718 -13.07997 -13.01393 -12.80628 -12.72409 -12.70537 -12.64691 -12.57097 -12.38777 -12.14948 -12.00541 -11.92534 -11.86418 -11.76169 -11.04189 -10.93838 -10.69467 -10.55829 -10.48103 -10.28226 -8.35431 -6.34693 -0.68611 1.29376 1.34810 1.42323 1.78875 2.28914 2.75798 2.85245 2.99073 3.25191 3.57326 3.70453 3.76793 3.92280 3.95383 3.99897 4.15225 4.17487 4.24538 4.34377 4.42673 4.48755 4.54004 4.58453 4.61514 4.67364 4.68123 4.76870 4.83816 4.91400 4.93838 5.04504 5.05493 5.12606 5.16702 5.19306 5.28082 5.33894 5.36773 5.40924 5.51359 5.62171 6.08835 6.25655 6.36079 6.68225 7.29786 8.80284 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.004156 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.948996 B = 6734.851944 C = 7144.836400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.065 0.935 4 C -0.167 4.167 5 C 0.141 3.859 6 N -1.105 6.105 7 S 2.613 3.387 8 O -0.988 6.988 9 O -0.980 6.980 10 C -0.584 4.584 11 C 0.045 3.955 12 C -0.175 4.175 13 C -0.187 4.187 14 C -0.502 4.502 15 H 0.051 0.949 16 C 0.027 3.973 17 N -0.935 5.935 18 Si 0.915 3.085 19 H -0.275 1.275 20 H -0.306 1.306 21 H -0.223 1.223 22 C -0.153 4.153 23 C 0.088 3.912 24 H 0.124 0.876 25 C -0.196 4.196 26 O -0.385 6.385 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.425 0.575 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.266 0.734 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 -9.197 11.742 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.083 0.917 4 C -0.207 4.207 5 C 0.034 3.966 6 N -0.865 5.865 7 S 2.709 3.291 8 O -0.978 6.978 9 O -0.970 6.970 10 C -0.716 4.716 11 C 0.042 3.958 12 C -0.233 4.233 13 C -0.243 4.243 14 C -0.541 4.541 15 H 0.069 0.931 16 C -0.171 4.171 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.235 1.235 21 H -0.147 1.147 22 C -0.192 4.192 23 C 0.030 3.970 24 H 0.141 0.859 25 C -0.253 4.253 26 O -0.305 6.305 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.261 0.739 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.815 -9.079 10.959 21.275 hybrid contribution 0.948 0.598 -0.603 1.273 sum -14.866 -8.481 10.356 20.004 Atomic orbital electron populations 1.21772 0.92047 1.03140 1.03093 1.22157 0.95978 0.95476 0.84084 0.91705 1.22792 0.95448 1.02981 0.99474 1.21034 0.94246 0.95488 0.85786 1.55461 1.80847 1.18952 1.31208 1.04778 0.76369 0.74505 0.73459 1.93535 1.84985 1.56381 1.62909 1.93521 1.50909 1.69545 1.83017 1.30403 1.18735 1.13572 1.08870 1.18212 0.94355 0.92765 0.90450 1.22695 1.01340 0.99621 0.99619 1.22844 0.98464 1.01451 1.01576 1.20910 1.10747 1.24873 0.97525 0.93066 1.25646 0.94435 0.95913 1.01148 1.70048 1.13688 1.35306 1.38336 0.86745 0.77796 0.80250 0.80754 1.20224 1.23498 1.14706 1.22568 1.02955 1.00962 0.92760 1.22295 0.80141 0.95809 0.98743 0.85873 1.22566 1.02859 0.97145 1.02775 1.87964 1.21525 1.77786 1.43213 0.91319 0.90323 0.91784 0.90518 0.90150 0.89535 0.73894 0.84276 0.84125 0.93199 0.92525 0.91708 0.91026 0.93880 0.91692 0.92500 0.88585 0.89363 0.91246 0.90228 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.56 71.98 0.69 -1.55 16 2 C 0.08 1.50 2.94 30.63 0.09 1.59 16 3 H 0.07 1.19 6.34 -2.38 -0.02 1.18 16 4 C -0.17 -3.39 5.03 30.69 0.15 -3.24 16 5 C 0.14 2.81 2.34 45.11 0.11 2.92 16 6 N -1.11 -24.28 5.37 -168.90 -0.91 -25.19 16 7 S 2.61 81.45 4.42 -56.49 -0.25 81.20 16 8 O -0.99 -35.85 15.93 -127.65 -2.03 -37.89 16 9 O -0.98 -34.50 14.85 -127.65 -1.90 -36.39 16 10 C -0.58 -19.68 4.88 71.98 0.35 -19.33 16 11 C 0.04 1.94 0.52 -52.93 -0.03 1.92 16 12 C -0.18 -7.56 6.95 71.98 0.50 -7.06 16 13 C -0.19 -7.87 7.22 71.98 0.52 -7.35 16 14 C -0.50 -26.53 8.62 25.60 0.22 -26.31 16 15 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 16 C 0.03 1.53 5.31 84.65 0.45 1.98 16 17 N -0.93 -56.19 13.96 21.45 0.30 -55.89 16 18 Si 0.91 43.51 22.79 68.60 1.56 45.07 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 21 H -0.22 -9.68 4.67 99.48 0.46 -9.21 16 22 C -0.15 -2.32 5.17 30.68 0.16 -2.16 16 23 C 0.09 1.34 3.91 30.63 0.12 1.46 16 24 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 25 C -0.20 -3.03 8.65 71.98 0.62 -2.41 16 26 O -0.39 -7.30 10.24 -148.98 -1.52 -8.82 16 27 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.79 7.55 -2.39 -0.02 1.77 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.75 5.64 -2.38 -0.01 1.73 16 33 H 0.42 7.52 8.80 -96.74 -0.85 6.67 16 34 H 0.14 4.13 7.45 -2.39 -0.02 4.12 16 35 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 36 H 0.05 2.00 6.21 -2.39 -0.01 1.98 16 37 H 0.06 2.53 4.32 -2.39 -0.01 2.52 16 38 H 0.06 2.64 8.11 -2.38 -0.02 2.62 16 39 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 40 H 0.04 1.88 2.28 -2.39 -0.01 1.88 16 41 H 0.06 2.54 5.46 -2.39 -0.01 2.52 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.06 0.97 4.98 -2.39 -0.01 0.96 16 Total: -1.00 -68.97 350.52 -0.91 -69.89 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.12 Total: 27.55 kcal Atomic # 6 Polarization: -63.49 SS G_CDS: 3.95 Total: -59.54 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -0.61 Total: -81.08 kcal Atomic # 8 Polarization: -77.64 SS G_CDS: -5.45 Total: -83.10 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.56 Total: 45.07 kcal Atomic # 16 Polarization: 81.45 SS G_CDS: -0.25 Total: 81.20 kcal Total: -68.97 -0.91 -69.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581173299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.067 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds