Wall clock time and date at job start Tue Mar 31 2020 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46779 * 2 1 4 4 O 1.42891 * 109.47688 * 120.00363 * 2 1 3 5 5 C 1.35661 * 117.00201 * 84.16432 * 4 2 1 6 6 C 1.38714 * 120.14647 * 4.49830 * 5 4 2 7 7 C 1.38049 * 120.08363 * 179.97438 * 6 5 4 8 8 C 1.38553 * 120.38962 * 359.97438 * 7 6 5 9 9 C 1.37789 * 120.29988 * 359.73682 * 8 7 6 10 10 C 1.39711 * 119.90632 * 0.54230 * 9 8 7 11 11 C 1.47535 * 120.19067 * 179.74547 * 10 9 8 12 12 O 1.21590 * 119.99631 * 216.17705 * 11 10 9 13 13 N 1.34778 * 120.00216 * 36.17107 * 11 10 9 14 14 C 1.47425 * 125.64740 * 356.16269 * 13 11 10 15 15 C 1.54906 * 104.83303 * 155.90505 * 14 13 11 16 16 C 1.55163 * 101.58358 * 37.00552 * 15 14 13 17 17 O 1.42899 * 110.71604 * 82.86169 * 16 15 14 18 18 C 1.50701 * 110.72271 * 205.95902 * 16 15 14 19 19 H 1.07996 * 119.99849 * 357.55872 * 18 16 15 20 20 C 1.37878 * 119.99607 * 177.55979 * 18 16 15 21 21 N 1.31516 * 120.00242 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99540 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47164 * 90.00217 * 22 20 18 24 24 H 1.48503 * 109.47058 * 210.00217 * 22 20 18 25 25 H 1.48497 * 109.47427 * 330.00151 * 22 20 18 26 26 C 1.47020 * 125.64841 * 176.20179 * 13 11 10 27 27 H 1.08997 * 109.47574 * 59.99690 * 1 2 3 28 28 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46838 * 299.99213 * 1 2 3 30 30 H 1.09001 * 109.46838 * 240.00786 * 2 1 3 31 31 H 1.08998 * 109.47003 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47320 * 300.00465 * 3 2 1 33 33 H 1.09001 * 109.46793 * 60.00759 * 3 2 1 34 34 H 1.08002 * 119.95612 * 359.97438 * 6 5 4 35 35 H 1.07993 * 119.80815 * 179.97438 * 7 6 5 36 36 H 1.07997 * 119.85115 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.04907 * 180.27332 * 9 8 7 38 38 H 1.09000 * 110.36627 * 37.06480 * 14 13 11 39 39 H 1.08999 * 110.36625 * 274.74228 * 14 13 11 40 40 H 1.09001 * 111.00629 * 278.93716 * 15 14 13 41 41 H 1.08995 * 111.04281 * 155.09991 * 15 14 13 42 42 H 0.96696 * 114.00331 * 180.02562 * 17 16 15 43 43 H 0.96999 * 119.99660 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.88292 * 61.60557 * 26 13 11 45 45 H 1.09008 * 109.88033 * 300.44147 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 2.0959 -2.0258 1.1037 6 6 1.8228 -2.6875 -0.0845 7 6 1.9148 -4.0635 -0.1472 8 6 2.2801 -4.7933 0.9724 9 6 2.5607 -4.1520 2.1592 10 6 2.4658 -2.7603 2.2383 11 6 2.7594 -2.0676 3.5074 12 8 2.1181 -1.0849 3.8260 13 7 3.7383 -2.5240 4.3136 14 6 4.5360 -3.7437 4.0909 15 6 5.8526 -3.5044 4.8711 16 6 5.3389 -2.7472 6.1243 17 8 4.8524 -3.6652 7.1054 18 6 6.4242 -1.8765 6.7033 19 1 7.4102 -1.8781 6.2629 20 6 6.1581 -1.0781 7.7954 21 7 4.9574 -1.0767 8.3321 22 14 7.5035 0.0006 8.5136 23 1 7.4805 1.3286 7.8496 24 1 7.2755 0.1718 9.9710 25 1 8.8240 -0.6412 8.2913 26 6 4.1869 -1.8886 5.5612 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.5379 -2.1255 -0.9616 35 1 1.7008 -4.5741 -1.0744 36 1 2.3498 -5.8694 0.9135 37 1 2.8494 -4.7245 3.0283 38 1 4.7427 -3.8730 3.0285 39 1 4.0142 -4.6155 4.4856 40 1 6.5409 -2.8853 4.2956 41 1 6.3197 -4.4489 5.1495 42 1 4.5192 -3.2424 7.9086 43 1 4.7704 -0.5152 9.1007 44 1 3.3652 -1.8554 6.2766 45 1 4.5432 -0.8791 5.3557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:57 Heat of formation + Delta-G solvation = -91.397859 kcal Electronic energy + Delta-G solvation = -27666.745809 eV Core-core repulsion = 23842.718207 eV Total energy + Delta-G solvation = -3824.027602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57419 -39.09563 -37.57068 -36.91368 -34.28067 -33.29009 -32.16832 -31.38372 -29.96107 -29.61832 -27.75681 -27.40459 -25.33404 -23.94364 -23.11069 -22.09600 -20.77409 -19.78750 -19.29112 -17.88396 -17.20069 -16.77115 -16.05748 -15.68591 -15.31006 -15.17998 -14.74193 -14.67504 -14.48866 -14.03552 -13.81037 -13.40927 -13.10599 -12.89740 -12.84722 -12.65551 -12.46276 -12.38841 -12.15635 -11.94107 -11.72849 -11.64560 -11.46804 -11.28611 -11.03202 -10.94311 -10.71203 -10.67768 -10.56247 -10.49435 -10.14680 -9.32982 -9.24228 -8.96531 -8.65075 -8.28682 -8.21110 -7.77193 -6.26597 -4.35426 1.02848 1.38776 3.13611 3.22691 3.25599 3.30168 3.32781 3.65048 3.95848 4.28933 4.55893 4.66997 4.76079 4.80077 4.92876 4.98655 5.02806 5.16543 5.27813 5.37828 5.38909 5.46726 5.57187 5.63589 5.69076 5.72819 5.77995 5.90895 5.98127 6.02679 6.03441 6.12285 6.25348 6.30349 6.40853 6.53804 6.69885 6.79294 6.90305 7.06165 7.31606 7.40840 7.47111 7.75575 8.02738 8.29730 8.67525 8.86261 9.32863 9.42689 10.81056 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.003799 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.289138 B = 7368.468470 C = 8513.142850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.282 6.282 5 C 0.181 3.819 6 C -0.225 4.225 7 C -0.063 4.063 8 C -0.169 4.169 9 C -0.054 4.054 10 C -0.155 4.155 11 C 0.566 3.434 12 O -0.533 6.533 13 N -0.607 5.607 14 C 0.098 3.902 15 C -0.119 4.119 16 C 0.248 3.752 17 O -0.586 6.586 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.106 3.894 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.385 0.615 43 H 0.270 0.730 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -3.709 -18.169 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 C -0.206 4.206 4 O -0.195 6.195 5 C 0.134 3.866 6 C -0.243 4.243 7 C -0.082 4.082 8 C -0.187 4.187 9 C -0.072 4.072 10 C -0.159 4.159 11 C 0.354 3.646 12 O -0.411 6.411 13 N -0.340 5.340 14 C -0.025 4.025 15 C -0.157 4.157 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.016 4.016 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.236 0.764 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.441 -3.338 -18.159 19.555 hybrid contribution 0.360 0.971 0.598 1.196 sum -6.082 -2.367 -17.561 18.734 Atomic orbital electron populations 1.22342 0.94979 1.02992 1.03171 1.22512 0.94494 0.93971 0.87460 1.21835 1.02231 0.93433 1.03059 1.86356 1.79319 1.15431 1.38354 1.18943 0.92117 0.83095 0.92494 1.21184 1.10134 0.95772 0.97234 1.21028 0.95701 0.93104 0.98348 1.20971 1.04580 1.00153 0.93024 1.21515 0.94710 0.92357 0.98641 1.19452 1.09507 0.93492 0.93445 1.17614 0.80037 0.84010 0.82904 1.90770 1.49490 1.26701 1.74159 1.48665 1.34488 1.26068 1.24812 1.22509 0.92951 0.87706 0.99293 1.22776 0.95024 1.01221 0.96651 1.19485 0.89083 0.85507 0.85137 1.86073 1.84014 1.38086 1.31372 1.21521 0.97445 1.24381 1.14306 0.91516 1.25076 0.95835 0.96128 0.96225 1.69646 1.20018 1.40188 1.23506 0.86404 0.81787 0.80525 0.78211 1.20420 1.20976 1.19681 1.22983 0.98433 0.97560 0.82594 0.91187 0.92024 0.91067 0.91014 0.91607 0.90685 0.91081 0.84982 0.85707 0.85460 0.84227 0.91668 0.91656 0.90538 0.90500 0.76424 0.91949 0.91662 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.32 37.16 0.35 -1.45 16 2 C 0.07 0.83 2.87 -26.73 -0.08 0.75 16 3 C -0.15 -1.53 9.56 37.16 0.36 -1.18 16 4 O -0.28 -4.70 8.48 -35.98 -0.31 -5.00 16 5 C 0.18 2.86 6.53 -38.70 -0.25 2.61 16 6 C -0.22 -2.67 8.45 -39.48 -0.33 -3.01 16 7 C -0.06 -0.66 10.03 -39.53 -0.40 -1.05 16 8 C -0.17 -1.88 10.02 -39.63 -0.40 -2.28 16 9 C -0.05 -0.76 7.91 -39.20 -0.31 -1.07 16 10 C -0.16 -2.71 5.52 -104.85 -0.58 -3.29 16 11 C 0.57 12.34 7.38 -12.47 -0.09 12.25 16 12 O -0.53 -13.54 16.33 -12.01 -0.20 -13.73 16 13 N -0.61 -13.14 3.33 -171.74 -0.57 -13.72 16 14 C 0.10 1.78 5.12 -2.53 -0.01 1.76 16 15 C -0.12 -2.39 6.22 -24.58 -0.15 -2.54 16 16 C 0.25 6.08 0.86 -89.93 -0.08 6.00 16 17 O -0.59 -14.83 13.09 -35.23 -0.46 -15.29 16 18 C -0.54 -14.20 8.12 -34.44 -0.28 -14.48 16 19 H 0.07 1.73 7.77 -52.49 -0.41 1.32 16 20 C 0.07 1.86 5.27 -17.82 -0.09 1.76 16 21 N -0.89 -24.10 10.97 55.43 0.61 -23.50 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.11 2.64 5.40 -3.06 -0.02 2.63 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.63 7.55 -51.93 -0.39 0.24 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.68 5.88 -51.93 -0.31 0.37 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.13 1.24 5.77 -52.49 -0.30 0.93 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.14 1.87 5.46 -52.49 -0.29 1.58 16 38 H 0.07 1.01 6.62 -51.93 -0.34 0.66 16 39 H 0.07 1.11 7.22 -51.93 -0.38 0.73 16 40 H 0.08 1.49 8.04 -51.93 -0.42 1.08 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.38 10.04 7.17 45.56 0.33 10.37 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.07 1.78 8.01 -51.93 -0.42 1.36 16 45 H 0.07 1.78 7.82 -51.92 -0.41 1.37 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -31.68 362.23 -8.70 -40.39 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.84 Total: 12.38 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.37 Total: -2.58 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.04 Total: -37.21 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.96 Total: -34.03 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.68 -8.70 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.012 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds