Wall clock time and date at job start Tue Mar 31 2020 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46779 * 2 1 4 4 O 1.42891 * 109.47688 * 120.00363 * 2 1 3 5 5 C 1.35661 * 117.00201 * 84.16432 * 4 2 1 6 6 C 1.38714 * 120.14647 * 4.49830 * 5 4 2 7 7 C 1.38049 * 120.08363 * 179.97438 * 6 5 4 8 8 C 1.38553 * 120.38962 * 359.97438 * 7 6 5 9 9 C 1.37789 * 120.29988 * 359.73682 * 8 7 6 10 10 C 1.39711 * 119.90632 * 0.54230 * 9 8 7 11 11 C 1.47535 * 120.19067 * 179.74547 * 10 9 8 12 12 O 1.21590 * 119.99631 * 216.17705 * 11 10 9 13 13 N 1.34778 * 120.00216 * 36.17107 * 11 10 9 14 14 C 1.47425 * 125.64740 * 356.16269 * 13 11 10 15 15 C 1.54906 * 104.83303 * 155.90505 * 14 13 11 16 16 C 1.55163 * 101.58358 * 37.00552 * 15 14 13 17 17 O 1.42899 * 110.71604 * 82.86169 * 16 15 14 18 18 C 1.50701 * 110.72271 * 205.95902 * 16 15 14 19 19 H 1.07996 * 119.99849 * 357.55872 * 18 16 15 20 20 C 1.37878 * 119.99607 * 177.55979 * 18 16 15 21 21 N 1.31516 * 120.00242 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99540 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47164 * 90.00217 * 22 20 18 24 24 H 1.48503 * 109.47058 * 210.00217 * 22 20 18 25 25 H 1.48497 * 109.47427 * 330.00151 * 22 20 18 26 26 C 1.47020 * 125.64841 * 176.20179 * 13 11 10 27 27 H 1.08997 * 109.47574 * 59.99690 * 1 2 3 28 28 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46838 * 299.99213 * 1 2 3 30 30 H 1.09001 * 109.46838 * 240.00786 * 2 1 3 31 31 H 1.08998 * 109.47003 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47320 * 300.00465 * 3 2 1 33 33 H 1.09001 * 109.46793 * 60.00759 * 3 2 1 34 34 H 1.08002 * 119.95612 * 359.97438 * 6 5 4 35 35 H 1.07993 * 119.80815 * 179.97438 * 7 6 5 36 36 H 1.07997 * 119.85115 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.04907 * 180.27332 * 9 8 7 38 38 H 1.09000 * 110.36627 * 37.06480 * 14 13 11 39 39 H 1.08999 * 110.36625 * 274.74228 * 14 13 11 40 40 H 1.09001 * 111.00629 * 278.93716 * 15 14 13 41 41 H 1.08995 * 111.04281 * 155.09991 * 15 14 13 42 42 H 0.96696 * 114.00331 * 180.02562 * 17 16 15 43 43 H 0.96999 * 119.99660 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.88292 * 61.60557 * 26 13 11 45 45 H 1.09008 * 109.88033 * 300.44147 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 2.0959 -2.0258 1.1037 6 6 1.8228 -2.6875 -0.0845 7 6 1.9148 -4.0635 -0.1472 8 6 2.2801 -4.7933 0.9724 9 6 2.5607 -4.1520 2.1592 10 6 2.4658 -2.7603 2.2383 11 6 2.7594 -2.0676 3.5074 12 8 2.1181 -1.0849 3.8260 13 7 3.7383 -2.5240 4.3136 14 6 4.5360 -3.7437 4.0909 15 6 5.8526 -3.5044 4.8711 16 6 5.3389 -2.7472 6.1243 17 8 4.8524 -3.6652 7.1054 18 6 6.4242 -1.8765 6.7033 19 1 7.4102 -1.8781 6.2629 20 6 6.1581 -1.0781 7.7954 21 7 4.9574 -1.0767 8.3321 22 14 7.5035 0.0006 8.5136 23 1 7.4805 1.3286 7.8496 24 1 7.2755 0.1718 9.9710 25 1 8.8240 -0.6412 8.2913 26 6 4.1869 -1.8886 5.5612 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.5379 -2.1255 -0.9616 35 1 1.7008 -4.5741 -1.0744 36 1 2.3498 -5.8694 0.9135 37 1 2.8494 -4.7245 3.0283 38 1 4.7427 -3.8730 3.0285 39 1 4.0142 -4.6155 4.4856 40 1 6.5409 -2.8853 4.2956 41 1 6.3197 -4.4489 5.1495 42 1 4.5192 -3.2424 7.9086 43 1 4.7704 -0.5152 9.1007 44 1 3.3652 -1.8554 6.2766 45 1 4.5432 -0.8791 5.3557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:57 Heat of formation + Delta-G solvation = -112.616123 kcal Electronic energy + Delta-G solvation = -27667.665902 eV Core-core repulsion = 23842.718207 eV Total energy + Delta-G solvation = -3824.947695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76577 -40.60559 -38.92733 -38.41101 -36.13394 -34.22337 -34.19355 -32.63481 -31.46596 -30.73622 -29.57088 -28.21485 -27.21059 -25.27035 -24.24617 -23.45695 -21.75498 -21.46591 -20.84734 -19.17794 -19.00493 -18.21481 -17.42549 -17.13675 -16.75505 -16.38932 -16.34431 -16.10574 -15.76042 -15.36467 -14.91894 -14.81712 -14.75583 -14.63611 -14.21436 -13.82616 -13.66362 -13.53093 -13.42326 -13.25056 -13.13136 -12.88228 -12.79663 -12.73704 -12.58510 -12.34864 -12.31912 -12.15719 -12.12354 -11.84375 -11.54889 -11.18590 -10.93152 -10.66989 -10.30719 -10.01443 -9.62391 -9.17475 -8.29105 -6.45828 -0.03247 0.42520 1.39428 1.40981 1.51380 1.78822 2.07911 2.22168 2.36404 2.80266 2.97287 3.52840 3.74331 3.75686 3.80943 3.92876 4.03066 4.05982 4.12956 4.22279 4.27897 4.35680 4.40072 4.51598 4.57720 4.63563 4.66931 4.76457 4.79237 4.84967 4.89460 4.97829 5.09300 5.12460 5.21316 5.22868 5.28269 5.34933 5.36655 5.48533 5.49980 5.72147 5.82278 6.01249 6.47064 6.59496 6.67043 7.17796 7.25658 7.33187 8.77105 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.003799 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.289138 B = 7368.468470 C = 8513.142850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.061 3.939 3 C -0.148 4.148 4 O -0.325 6.325 5 C 0.162 3.838 6 C -0.219 4.219 7 C -0.045 4.045 8 C -0.159 4.159 9 C -0.059 4.059 10 C -0.195 4.195 11 C 0.559 3.441 12 O -0.588 6.588 13 N -0.613 5.613 14 C 0.105 3.895 15 C -0.113 4.113 16 C 0.235 3.765 17 O -0.586 6.586 18 C -0.560 4.560 19 H 0.069 0.931 20 C 0.024 3.976 21 N -0.918 5.918 22 Si 0.965 3.035 23 H -0.280 1.280 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.123 3.877 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.377 0.623 43 H 0.271 0.729 44 H 0.027 0.973 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.786 -5.955 -21.890 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 C -0.205 4.205 4 O -0.239 6.239 5 C 0.114 3.886 6 C -0.237 4.237 7 C -0.062 4.062 8 C -0.176 4.176 9 C -0.077 4.077 10 C -0.198 4.198 11 C 0.350 3.650 12 O -0.470 6.470 13 N -0.345 5.345 14 C -0.016 4.016 15 C -0.151 4.151 16 C 0.195 3.805 17 O -0.395 6.395 18 C -0.598 4.598 19 H 0.087 0.913 20 C -0.176 4.176 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.206 1.206 24 H -0.205 1.205 25 H -0.186 1.186 26 C 0.000 4.000 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.178 0.822 35 H 0.189 0.811 36 H 0.182 0.818 37 H 0.159 0.841 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.054 -5.627 -21.908 23.416 hybrid contribution 0.176 1.664 1.661 2.358 sum -5.878 -3.963 -20.247 21.452 Atomic orbital electron populations 1.22318 0.94047 1.03030 1.03531 1.22882 0.95321 0.94142 0.87048 1.21892 1.01664 0.93307 1.03627 1.86322 1.79936 1.16478 1.41146 1.19258 0.92812 0.83055 0.93472 1.21520 1.08990 0.96815 0.96404 1.21610 0.92542 0.92356 0.99741 1.21401 1.02556 1.01976 0.91712 1.21607 0.95126 0.90732 1.00245 1.19282 1.13817 0.95026 0.91707 1.18525 0.78888 0.83463 0.84087 1.90712 1.51373 1.29356 1.75580 1.48740 1.35075 1.27028 1.23689 1.22675 0.91300 0.86433 1.01190 1.22780 0.96196 1.01530 0.94559 1.19677 0.88399 0.86086 0.86341 1.86058 1.84007 1.38169 1.31236 1.21870 0.98018 1.25124 1.14760 0.91296 1.25857 0.97806 0.97292 0.96673 1.69762 1.21549 1.40707 1.23729 0.85442 0.79544 0.78555 0.77438 1.20638 1.20510 1.18618 1.22497 0.97381 0.96412 0.83701 0.87824 0.92106 0.93629 0.88253 0.92528 0.87073 0.93473 0.82211 0.81127 0.81751 0.84075 0.88199 0.90132 0.90088 0.88575 0.77314 0.92005 0.95423 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.32 71.98 0.67 -2.62 16 2 C 0.06 1.36 2.87 30.60 0.09 1.44 16 3 C -0.15 -3.03 9.56 71.98 0.69 -2.35 16 4 O -0.33 -11.16 8.48 -73.24 -0.62 -11.79 16 5 C 0.16 5.00 6.53 22.84 0.15 5.15 16 6 C -0.22 -4.41 8.45 22.34 0.19 -4.22 16 7 C -0.04 -0.68 10.03 22.30 0.22 -0.45 16 8 C -0.16 -2.76 10.02 22.24 0.22 -2.53 16 9 C -0.06 -1.52 7.91 22.52 0.18 -1.34 16 10 C -0.19 -6.80 5.52 -20.01 -0.11 -6.91 16 11 C 0.56 25.78 7.38 86.70 0.64 26.42 16 12 O -0.59 -32.49 16.33 12.54 0.20 -32.28 16 13 N -0.61 -27.73 3.33 -815.54 -2.71 -30.44 16 14 C 0.11 3.72 5.12 86.85 0.44 4.17 16 15 C -0.11 -4.48 6.22 31.99 0.20 -4.28 16 16 C 0.24 11.88 0.86 -10.35 -0.01 11.87 16 17 O -0.59 -30.53 13.09 -148.98 -1.95 -32.48 16 18 C -0.56 -30.31 8.12 25.60 0.21 -30.10 16 19 H 0.07 3.61 7.77 -2.91 -0.02 3.58 16 20 C 0.02 1.32 5.27 84.65 0.45 1.76 16 21 N -0.92 -51.76 10.97 21.45 0.24 -51.52 16 22 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.12 6.60 5.40 86.73 0.47 7.07 16 27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.16 7.55 -2.39 -0.02 1.14 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.59 5.88 -2.39 -0.01 1.58 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.16 2.23 5.77 -2.91 -0.02 2.21 16 35 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.14 3.48 5.46 -2.91 -0.02 3.46 16 38 H 0.10 2.86 6.62 -2.39 -0.02 2.84 16 39 H 0.08 2.61 7.22 -2.39 -0.02 2.59 16 40 H 0.08 3.11 8.04 -2.39 -0.02 3.09 16 41 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.38 20.65 7.17 -74.06 -0.53 20.12 16 43 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.03 1.64 8.01 -2.39 -0.02 1.62 16 45 H 0.03 1.63 7.82 -2.38 -0.02 1.61 16 Total: -1.00 -76.62 362.23 2.36 -74.26 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.48 Total: 36.01 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 4.70 Total: 3.07 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.48 Total: -81.97 kcal Atomic # 8 Polarization: -74.18 SS G_CDS: -2.37 Total: -76.55 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.62 2.36 -74.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.355 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds