Wall clock time and date at job start Tue Mar 31 2020 13:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47207 * 2 1 4 4 O 1.42895 * 109.47210 * 119.99995 * 2 1 3 5 5 C 1.35652 * 117.00333 * 84.34028 * 4 2 1 6 6 C 1.38716 * 120.14633 * 4.60126 * 5 4 2 7 7 C 1.38058 * 120.08194 * 179.97438 * 6 5 4 8 8 C 1.38544 * 120.38993 * 359.97438 * 7 6 5 9 9 C 1.37787 * 120.30313 * 359.76480 * 8 7 6 10 10 C 1.39707 * 119.90618 * 0.50899 * 9 8 7 11 11 C 1.47529 * 120.19163 * 179.74543 * 10 9 8 12 12 O 1.21596 * 120.00356 * 187.94468 * 11 10 9 13 13 N 1.34780 * 120.00220 * 7.94169 * 11 10 9 14 14 C 1.47424 * 125.64928 * 174.95616 * 13 11 10 15 15 C 1.55395 * 104.87161 * 204.16697 * 14 13 11 16 16 C 1.55153 * 101.36455 * 323.01781 * 15 14 13 17 17 O 1.42907 * 110.72053 * 277.04246 * 16 15 14 18 18 C 1.50699 * 110.72185 * 153.94888 * 16 15 14 19 19 H 1.08000 * 119.99615 * 2.44155 * 18 16 15 20 20 C 1.37873 * 120.00398 * 182.44105 * 18 16 15 21 21 N 1.31513 * 119.99994 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00254 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47054 * 59.99677 * 22 20 18 24 24 H 1.48493 * 109.47283 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46878 * 300.00114 * 22 20 18 26 26 C 1.47020 * 125.64725 * 354.99409 * 13 11 10 27 27 H 1.09005 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47507 * 300.00250 * 1 2 3 29 29 H 1.08996 * 109.47093 * 60.00301 * 1 2 3 30 30 H 1.09004 * 109.47424 * 240.00197 * 2 1 3 31 31 H 1.08993 * 109.47029 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46659 * 300.00323 * 3 2 1 33 33 H 1.09004 * 109.46768 * 59.99795 * 3 2 1 34 34 H 1.07993 * 119.95869 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.79802 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.84651 * 180.02562 * 8 7 6 37 37 H 1.07994 * 120.04595 * 180.27572 * 9 8 7 38 38 H 1.08998 * 110.37074 * 322.99966 * 14 13 11 39 39 H 1.08998 * 110.36776 * 85.22133 * 14 13 11 40 40 H 1.08997 * 111.18396 * 204.97957 * 15 14 13 41 41 H 1.08994 * 111.02075 * 80.97941 * 15 14 13 42 42 H 0.96694 * 114.00296 * 177.56174 * 17 16 15 43 43 H 0.97001 * 120.00113 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.88112 * 59.48944 * 26 13 11 45 45 H 1.09002 * 109.88377 * 298.32738 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0992 -2.0254 1.1027 6 6 1.8317 -2.6865 -0.0871 7 6 1.9272 -4.0623 -0.1510 8 6 2.2905 -4.7924 0.9691 9 6 2.5650 -4.1517 2.1576 10 6 2.4667 -2.7604 2.2379 11 6 2.7538 -2.0684 3.5088 12 8 2.5292 -0.8783 3.6173 13 7 3.2650 -2.7553 4.5496 14 6 3.6951 -2.1742 5.8344 15 6 4.7308 -3.1842 6.4021 16 6 4.1101 -4.5371 5.9642 17 8 3.1041 -4.9548 6.8892 18 6 5.1764 -5.5931 5.8264 19 1 6.2032 -5.3580 6.0648 20 6 4.8411 -6.8593 5.3958 21 7 3.5907 -7.1457 5.1060 22 14 6.1630 -8.1680 5.2243 23 1 6.8077 -8.3962 6.5425 24 1 5.5481 -9.4333 4.7488 25 1 7.1840 -7.7150 4.2458 26 6 3.4867 -4.2081 4.5915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5491 -2.1242 -0.9647 35 1 1.7174 -4.5723 -1.0795 36 1 2.3629 -5.8683 0.9091 37 1 2.8522 -4.7245 3.0269 38 1 4.1622 -1.2025 5.6740 39 1 2.8459 -2.0791 6.5110 40 1 4.7929 -3.1161 7.4882 41 1 5.7099 -3.0379 5.9463 42 1 2.6588 -5.7766 6.6415 43 1 3.3549 -8.0364 4.8027 44 1 4.1696 -4.5019 3.7942 45 1 2.5370 -4.7314 4.4805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:00 Heat of formation + Delta-G solvation = -73.668862 kcal Electronic energy + Delta-G solvation = -27968.513914 eV Core-core repulsion = 24145.255099 eV Total energy + Delta-G solvation = -3823.258815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47646 -39.13792 -37.36739 -36.98843 -34.20400 -33.18054 -32.30376 -31.61436 -29.71482 -29.43014 -27.86929 -27.35736 -25.40990 -23.85564 -23.22175 -21.79235 -20.72910 -19.85707 -19.31770 -17.69094 -17.29676 -16.61250 -16.00722 -15.54626 -15.32731 -14.99963 -14.93930 -14.61640 -14.38013 -14.02390 -13.54578 -13.33409 -13.02119 -12.95326 -12.76980 -12.59393 -12.48299 -12.35711 -12.03585 -11.79131 -11.70072 -11.59060 -11.54032 -11.22903 -11.02869 -10.84788 -10.67546 -10.59441 -10.57131 -10.30277 -10.19589 -9.31184 -9.28390 -8.79728 -8.73266 -8.28888 -8.08288 -7.76559 -6.37990 -4.45782 1.17495 1.62827 3.17307 3.22921 3.25967 3.27092 3.36741 3.68321 4.18409 4.21505 4.63888 4.79159 4.87083 4.88968 4.93824 5.09210 5.22610 5.32549 5.40911 5.50695 5.55184 5.60301 5.63697 5.68216 5.76775 5.85508 5.93039 6.01169 6.02691 6.05730 6.10931 6.26921 6.34005 6.45246 6.51791 6.62492 6.73069 6.77701 6.95191 6.97827 7.06097 7.27633 7.60686 7.65373 7.92661 8.28298 8.57551 8.85424 9.23323 9.34909 10.69779 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.004115 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.161555 B = 6802.659458 C = 7888.260365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.146 4.146 4 O -0.274 6.274 5 C 0.182 3.818 6 C -0.234 4.234 7 C -0.061 4.061 8 C -0.168 4.168 9 C -0.079 4.079 10 C -0.165 4.165 11 C 0.568 3.432 12 O -0.543 6.543 13 N -0.610 5.610 14 C 0.112 3.888 15 C -0.118 4.118 16 C 0.247 3.753 17 O -0.583 6.583 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.072 3.928 21 N -0.900 5.900 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.083 3.917 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.184 0.816 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.383 0.617 43 H 0.272 0.728 44 H 0.077 0.923 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 7.259 -11.359 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 C -0.203 4.203 4 O -0.186 6.186 5 C 0.134 3.866 6 C -0.253 4.253 7 C -0.079 4.079 8 C -0.186 4.186 9 C -0.096 4.096 10 C -0.169 4.169 11 C 0.358 3.642 12 O -0.422 6.422 13 N -0.343 5.343 14 C -0.010 4.010 15 C -0.156 4.156 16 C 0.206 3.794 17 O -0.392 6.392 18 C -0.574 4.574 19 H 0.085 0.915 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.039 4.039 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.201 0.799 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.158 8.481 -10.947 14.459 hybrid contribution 0.336 -1.546 -0.879 1.810 sum -3.822 6.934 -11.826 14.232 Atomic orbital electron populations 1.22335 0.95166 1.02978 1.02953 1.22499 0.94369 0.93981 0.87961 1.21805 1.02116 0.93556 1.02807 1.86431 1.79199 1.15397 1.37581 1.18993 0.92072 0.82954 0.92551 1.21125 1.11261 0.95748 0.97137 1.21095 0.95319 0.93140 0.98365 1.21094 1.04090 1.00433 0.93013 1.23199 0.92242 0.93186 1.00977 1.19387 1.11118 0.93491 0.92922 1.17680 0.77843 0.86096 0.82550 1.90743 1.53531 1.14799 1.83155 1.48577 1.61552 1.09983 1.14172 1.22246 0.97541 0.96817 0.84398 1.22859 0.97302 0.94659 1.00817 1.19529 0.85857 0.90643 0.83329 1.86136 1.54957 1.46577 1.51525 1.21542 0.94706 0.95510 1.45612 0.91479 1.25036 0.95928 0.98526 0.93591 1.69613 1.16749 1.22264 1.45335 0.86469 0.81485 0.80283 0.78778 1.19986 1.21038 1.20003 1.23491 1.00424 0.77505 1.02480 0.92003 0.91272 0.91302 0.91100 0.91719 0.90888 0.91233 0.85217 0.85935 0.85417 0.79931 0.91745 0.91906 0.90415 0.90519 0.76597 0.91834 0.90527 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.33 37.16 0.35 -1.52 16 2 C 0.07 0.82 2.87 -26.73 -0.08 0.75 16 3 C -0.15 -1.51 9.56 37.16 0.36 -1.15 16 4 O -0.27 -4.72 7.91 -40.37 -0.32 -5.04 16 5 C 0.18 3.15 6.56 -38.69 -0.25 2.90 16 6 C -0.23 -3.25 8.47 -39.47 -0.33 -3.59 16 7 C -0.06 -0.80 10.03 -39.53 -0.40 -1.20 16 8 C -0.17 -2.56 10.02 -39.63 -0.40 -2.96 16 9 C -0.08 -1.43 8.59 -39.20 -0.34 -1.76 16 10 C -0.17 -3.22 5.88 -104.85 -0.62 -3.83 16 11 C 0.57 12.42 7.79 -12.47 -0.10 12.32 16 12 O -0.54 -12.91 15.51 -16.44 -0.25 -13.17 16 13 N -0.61 -13.04 3.33 -175.00 -0.58 -13.62 16 14 C 0.11 2.26 6.89 -2.27 -0.02 2.24 16 15 C -0.12 -2.41 6.26 -24.32 -0.15 -2.57 16 16 C 0.25 5.71 0.85 -89.94 -0.08 5.64 16 17 O -0.58 -14.18 13.07 -35.23 -0.46 -14.64 16 18 C -0.54 -13.22 8.11 -34.44 -0.28 -13.50 16 19 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 20 C 0.07 1.74 5.27 -17.82 -0.09 1.64 16 21 N -0.90 -21.68 10.96 55.43 0.61 -21.07 16 22 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C 0.08 1.81 3.38 -3.07 -0.01 1.80 16 27 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.74 5.86 -51.93 -0.30 0.44 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.13 1.43 5.79 -52.49 -0.30 1.13 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.18 3.58 2.78 -57.10 -0.16 3.42 16 38 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 42 H 0.38 9.37 7.23 45.56 0.33 9.70 16 43 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 44 H 0.08 1.72 6.36 -51.93 -0.33 1.39 16 45 H 0.08 1.69 6.64 -51.93 -0.34 1.35 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -28.49 359.06 -8.75 -37.23 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -5.69 Total: 15.44 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.44 Total: -4.79 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.03 Total: -34.69 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -1.03 Total: -32.84 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.49 -8.75 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.436 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds