Wall clock time and date at job start Tue Mar 31 2020 13:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47207 * 2 1 4 4 O 1.42895 * 109.47210 * 119.99995 * 2 1 3 5 5 C 1.35652 * 117.00333 * 84.34028 * 4 2 1 6 6 C 1.38716 * 120.14633 * 4.60126 * 5 4 2 7 7 C 1.38058 * 120.08194 * 179.97438 * 6 5 4 8 8 C 1.38544 * 120.38993 * 359.97438 * 7 6 5 9 9 C 1.37787 * 120.30313 * 359.76480 * 8 7 6 10 10 C 1.39707 * 119.90618 * 0.50899 * 9 8 7 11 11 C 1.47529 * 120.19163 * 179.74543 * 10 9 8 12 12 O 1.21596 * 120.00356 * 187.94468 * 11 10 9 13 13 N 1.34780 * 120.00220 * 7.94169 * 11 10 9 14 14 C 1.47424 * 125.64928 * 174.95616 * 13 11 10 15 15 C 1.55395 * 104.87161 * 204.16697 * 14 13 11 16 16 C 1.55153 * 101.36455 * 323.01781 * 15 14 13 17 17 O 1.42907 * 110.72053 * 277.04246 * 16 15 14 18 18 C 1.50699 * 110.72185 * 153.94888 * 16 15 14 19 19 H 1.08000 * 119.99615 * 2.44155 * 18 16 15 20 20 C 1.37873 * 120.00398 * 182.44105 * 18 16 15 21 21 N 1.31513 * 119.99994 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00254 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47054 * 59.99677 * 22 20 18 24 24 H 1.48493 * 109.47283 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46878 * 300.00114 * 22 20 18 26 26 C 1.47020 * 125.64725 * 354.99409 * 13 11 10 27 27 H 1.09005 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47507 * 300.00250 * 1 2 3 29 29 H 1.08996 * 109.47093 * 60.00301 * 1 2 3 30 30 H 1.09004 * 109.47424 * 240.00197 * 2 1 3 31 31 H 1.08993 * 109.47029 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46659 * 300.00323 * 3 2 1 33 33 H 1.09004 * 109.46768 * 59.99795 * 3 2 1 34 34 H 1.07993 * 119.95869 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.79802 * 179.97438 * 7 6 5 36 36 H 1.08005 * 119.84651 * 180.02562 * 8 7 6 37 37 H 1.07994 * 120.04595 * 180.27572 * 9 8 7 38 38 H 1.08998 * 110.37074 * 322.99966 * 14 13 11 39 39 H 1.08998 * 110.36776 * 85.22133 * 14 13 11 40 40 H 1.08997 * 111.18396 * 204.97957 * 15 14 13 41 41 H 1.08994 * 111.02075 * 80.97941 * 15 14 13 42 42 H 0.96694 * 114.00296 * 177.56174 * 17 16 15 43 43 H 0.97001 * 120.00113 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.88112 * 59.48944 * 26 13 11 45 45 H 1.09002 * 109.88377 * 298.32738 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0992 -2.0254 1.1027 6 6 1.8317 -2.6865 -0.0871 7 6 1.9272 -4.0623 -0.1510 8 6 2.2905 -4.7924 0.9691 9 6 2.5650 -4.1517 2.1576 10 6 2.4667 -2.7604 2.2379 11 6 2.7538 -2.0684 3.5088 12 8 2.5292 -0.8783 3.6173 13 7 3.2650 -2.7553 4.5496 14 6 3.6951 -2.1742 5.8344 15 6 4.7308 -3.1842 6.4021 16 6 4.1101 -4.5371 5.9642 17 8 3.1041 -4.9548 6.8892 18 6 5.1764 -5.5931 5.8264 19 1 6.2032 -5.3580 6.0648 20 6 4.8411 -6.8593 5.3958 21 7 3.5907 -7.1457 5.1060 22 14 6.1630 -8.1680 5.2243 23 1 6.8077 -8.3962 6.5425 24 1 5.5481 -9.4333 4.7488 25 1 7.1840 -7.7150 4.2458 26 6 3.4867 -4.2081 4.5915 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5491 -2.1242 -0.9647 35 1 1.7174 -4.5723 -1.0795 36 1 2.3629 -5.8683 0.9091 37 1 2.8522 -4.7245 3.0269 38 1 4.1622 -1.2025 5.6740 39 1 2.8459 -2.0791 6.5110 40 1 4.7929 -3.1161 7.4882 41 1 5.7099 -3.0379 5.9463 42 1 2.6588 -5.7766 6.6415 43 1 3.3549 -8.0364 4.8027 44 1 4.1696 -4.5019 3.7942 45 1 2.5370 -4.7314 4.4805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:59 Heat of formation + Delta-G solvation = -90.453600 kcal Electronic energy + Delta-G solvation = -27969.241755 eV Core-core repulsion = 24145.255099 eV Total energy + Delta-G solvation = -3823.986656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82279 -40.62057 -38.85895 -38.45901 -36.00408 -34.18678 -34.15031 -33.05007 -31.22683 -30.72368 -29.57846 -28.18012 -27.18796 -25.37505 -24.36876 -23.26194 -21.92404 -21.37946 -20.91419 -19.13286 -18.90258 -18.13556 -17.53982 -16.97703 -16.70624 -16.54003 -16.36904 -16.01510 -15.84581 -15.18634 -14.91791 -14.83369 -14.74722 -14.46416 -14.11957 -13.95199 -13.59504 -13.45760 -13.38707 -13.19090 -13.13582 -12.85988 -12.76634 -12.72699 -12.53967 -12.31939 -12.29569 -12.12765 -11.95277 -11.80186 -11.51860 -11.06705 -10.95171 -10.58782 -10.13149 -10.05253 -9.63644 -9.15965 -8.22863 -6.37548 -0.11239 0.41555 1.47309 1.49805 1.56073 1.87334 2.07206 2.22086 2.42559 2.84479 3.02707 3.52191 3.77237 3.78664 3.89048 3.95488 4.01569 4.04652 4.13013 4.18247 4.27097 4.29801 4.41617 4.51875 4.57653 4.67286 4.71016 4.79029 4.82691 4.85028 4.89886 4.93348 5.06884 5.11452 5.22326 5.25015 5.27149 5.33483 5.34277 5.49550 5.52108 5.77429 5.79254 6.06558 6.47541 6.60646 6.67185 7.18060 7.32891 7.41801 8.83697 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.004115 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.161555 B = 6802.659458 C = 7888.260365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.056 3.944 3 C -0.144 4.144 4 O -0.307 6.307 5 C 0.173 3.827 6 C -0.224 4.224 7 C -0.041 4.041 8 C -0.173 4.173 9 C -0.094 4.094 10 C -0.204 4.204 11 C 0.561 3.439 12 O -0.572 6.572 13 N -0.615 5.615 14 C 0.113 3.887 15 C -0.111 4.111 16 C 0.232 3.768 17 O -0.591 6.591 18 C -0.560 4.560 19 H 0.062 0.938 20 C 0.039 3.961 21 N -0.909 5.909 22 Si 0.958 3.042 23 H -0.278 1.278 24 H -0.280 1.280 25 H -0.273 1.273 26 C 0.108 3.892 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.379 0.621 43 H 0.274 0.726 44 H 0.067 0.933 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 6.880 -14.338 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 C -0.201 4.201 4 O -0.220 6.220 5 C 0.125 3.875 6 C -0.242 4.242 7 C -0.059 4.059 8 C -0.191 4.191 9 C -0.111 4.111 10 C -0.207 4.207 11 C 0.353 3.647 12 O -0.454 6.454 13 N -0.348 5.348 14 C -0.010 4.010 15 C -0.149 4.149 16 C 0.192 3.808 17 O -0.400 6.400 18 C -0.598 4.598 19 H 0.081 0.919 20 C -0.163 4.163 21 N -0.548 5.548 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.205 1.205 25 H -0.198 1.198 26 C -0.014 4.014 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.183 0.817 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.229 0.771 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.405 8.105 -13.924 16.702 hybrid contribution 0.361 -1.393 -0.027 1.439 sum -4.044 6.711 -13.951 16.001 Atomic orbital electron populations 1.22318 0.94019 1.02876 1.03725 1.22931 0.95370 0.94457 0.87197 1.21854 1.01630 0.92862 1.03721 1.86403 1.79492 1.15577 1.40485 1.19202 0.91939 0.83361 0.92986 1.21521 1.09574 0.96291 0.96822 1.21587 0.92314 0.92853 0.99143 1.21339 1.03729 1.01433 0.92611 1.22958 0.93796 0.92688 1.01678 1.19365 1.14386 0.94239 0.92734 1.18230 0.77094 0.85969 0.83392 1.90699 1.54950 1.15949 1.83822 1.48674 1.61657 1.09828 1.14615 1.22271 0.97431 0.97182 0.84080 1.22832 0.97430 0.93160 1.01461 1.19751 0.85634 0.91555 0.83890 1.86126 1.55306 1.46372 1.52149 1.21723 0.94831 0.96535 1.46724 0.91950 1.25616 0.97609 0.99887 0.93161 1.69680 1.17625 1.22614 1.44851 0.85612 0.79377 0.78269 0.78373 1.20326 1.20467 1.19811 1.23129 0.99303 0.77623 1.01349 0.92503 0.93112 0.87901 0.88804 0.92532 0.87303 0.92926 0.81685 0.81323 0.83796 0.82219 0.90796 0.92230 0.89487 0.89821 0.77067 0.91591 0.91520 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.33 71.98 0.67 -2.57 16 2 C 0.06 1.23 2.87 30.59 0.09 1.32 16 3 C -0.14 -2.75 9.56 71.98 0.69 -2.06 16 4 O -0.31 -10.51 7.91 -68.91 -0.55 -11.05 16 5 C 0.17 5.88 6.56 22.85 0.15 6.03 16 6 C -0.22 -5.50 8.47 22.34 0.19 -5.31 16 7 C -0.04 -0.93 10.03 22.30 0.22 -0.70 16 8 C -0.17 -4.96 10.02 22.24 0.22 -4.74 16 9 C -0.09 -3.44 8.59 22.52 0.19 -3.25 16 10 C -0.20 -8.10 5.88 -20.01 -0.12 -8.22 16 11 C 0.56 25.59 7.79 86.69 0.68 26.27 16 12 O -0.57 -28.40 15.51 16.75 0.26 -28.14 16 13 N -0.62 -27.40 3.33 -825.82 -2.75 -30.15 16 14 C 0.11 4.66 6.89 87.03 0.60 5.26 16 15 C -0.11 -4.60 6.26 32.16 0.20 -4.40 16 16 C 0.23 11.00 0.85 -10.35 -0.01 10.99 16 17 O -0.59 -29.51 13.07 -148.98 -1.95 -31.46 16 18 C -0.56 -28.04 8.11 25.60 0.21 -27.84 16 19 H 0.06 3.10 7.77 -2.91 -0.02 3.08 16 20 C 0.04 1.89 5.27 84.65 0.45 2.34 16 21 N -0.91 -44.12 10.96 21.45 0.24 -43.89 16 22 Si 0.96 39.27 29.54 68.60 2.03 41.29 16 23 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 C 0.11 4.91 3.38 86.73 0.29 5.20 16 27 H 0.06 1.12 7.58 -2.38 -0.02 1.10 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.61 5.86 -2.38 -0.01 1.59 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.17 2.82 5.79 -2.91 -0.02 2.80 16 35 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.16 6.55 2.78 -7.25 -0.02 6.53 16 38 H 0.07 2.89 8.09 -2.39 -0.02 2.87 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.08 3.32 8.04 -2.39 -0.02 3.30 16 42 H 0.38 19.14 7.23 -74.06 -0.54 18.60 16 43 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 44 H 0.07 3.14 6.36 -2.38 -0.02 3.12 16 45 H 0.06 2.96 6.64 -2.39 -0.02 2.95 16 Total: -1.00 -63.72 359.06 2.48 -61.24 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: 0.47 Total: 43.84 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.72 Total: -1.69 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.51 Total: -74.04 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -2.23 Total: -70.65 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Total: -63.72 2.48 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.212 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds