Wall clock time and date at job start Tue Mar 31 2020 13:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46942 * 2 1 4 4 O 1.42899 * 109.46878 * 180.02562 * 3 2 1 5 5 C 1.35906 * 117.00076 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.98708 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.24202 * 179.97438 * 6 5 4 8 8 C 1.38013 * 120.20465 * 0.04600 * 7 6 5 9 9 C 1.39555 * 119.96585 * 359.97438 * 8 7 6 10 10 C 1.47864 * 120.11672 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99922 * 24.48913 * 10 9 8 12 12 N 1.34774 * 120.00252 * 204.48265 * 10 9 8 13 13 C 1.47430 * 125.64494 * 5.48190 * 12 10 9 14 14 C 1.55130 * 104.72116 * 155.81858 * 13 12 10 15 15 C 1.55151 * 101.48864 * 37.29024 * 14 13 12 16 16 O 1.42901 * 110.72158 * 82.69824 * 15 14 13 17 17 C 1.50701 * 110.87651 * 205.90199 * 15 14 13 18 18 H 1.07997 * 119.99564 * 355.06080 * 17 15 14 19 19 C 1.37874 * 119.99992 * 175.06701 * 17 15 14 20 20 N 1.31509 * 120.00461 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 119.99767 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47298 * 59.99756 * 21 19 17 23 23 H 1.48506 * 109.47243 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46994 * 299.99706 * 21 19 17 25 25 C 1.47022 * 125.64898 * 185.78708 * 12 10 9 26 26 C 1.38460 * 119.98325 * 179.72538 * 5 4 3 27 27 H 1.09001 * 109.46863 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47176 * 299.99669 * 1 2 3 29 29 H 1.09000 * 109.46857 * 59.99822 * 1 2 3 30 30 H 1.09006 * 109.46565 * 240.00026 * 2 1 3 31 31 H 1.09000 * 109.46857 * 120.00178 * 2 1 3 32 32 H 1.08993 * 109.47544 * 60.00293 * 3 2 1 33 33 H 1.09000 * 109.47061 * 299.99468 * 3 2 1 34 34 H 1.07997 * 119.87707 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.89392 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.01544 * 179.97438 * 8 7 6 37 37 H 1.08998 * 110.36251 * 274.74045 * 13 12 10 38 38 H 1.08990 * 110.37001 * 37.06748 * 13 12 10 39 39 H 1.09004 * 111.18731 * 279.18817 * 14 13 12 40 40 H 1.09000 * 110.94259 * 155.29015 * 14 13 12 41 41 H 0.96701 * 114.00741 * 185.02506 * 16 15 14 42 42 H 0.96999 * 120.00233 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.87897 * 300.44100 * 25 12 10 44 44 H 1.08998 * 109.88165 * 61.45454 * 25 12 10 45 45 H 1.07991 * 120.10474 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0012 6 6 3.3295 3.8178 -0.0018 7 6 3.9517 5.0523 -0.0019 8 6 5.3293 5.1355 -0.0024 9 6 6.0980 3.9708 -0.0022 10 6 7.5742 4.0561 -0.0022 11 8 8.1256 5.0476 0.4341 12 7 8.3083 3.0345 -0.4858 13 6 7.7737 1.8291 -1.1453 14 6 8.9387 1.3153 -2.0315 15 6 10.1666 1.6129 -1.1310 16 8 10.3520 0.5727 -0.1689 17 6 11.4103 1.7958 -1.9620 18 1 11.3752 1.6342 -3.0293 19 6 12.5931 2.1692 -1.3598 20 7 12.6358 2.3664 -0.0603 21 14 14.1349 2.3952 -2.3899 22 1 13.9006 3.4519 -3.4066 23 1 15.2631 2.7958 -1.5112 24 1 14.4668 1.1179 -3.0710 25 6 9.7743 2.9346 -0.4373 26 6 5.4687 2.7254 0.0039 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2512 3.7587 -0.0022 35 1 3.3578 5.9543 -0.0019 36 1 5.8121 6.1016 -0.0029 37 1 7.5003 1.0800 -0.4023 38 1 6.9125 2.0847 -1.7624 39 1 8.9966 1.8712 -2.9673 40 1 8.8424 0.2460 -2.2201 41 1 11.0588 0.7470 0.4677 42 1 13.4678 2.6295 0.3633 43 1 10.2208 3.7771 -0.9652 44 1 10.1112 2.9261 0.5993 45 1 6.0583 1.8206 0.0080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:03 Heat of formation + Delta-G solvation = -95.694676 kcal Electronic energy + Delta-G solvation = -26878.098063 eV Core-core repulsion = 23053.884137 eV Total energy + Delta-G solvation = -3824.213926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48503 -39.36223 -37.65218 -36.82028 -34.39658 -34.21300 -32.22480 -31.48752 -30.03997 -29.84161 -27.82472 -26.86231 -25.37459 -23.95189 -22.45521 -22.28198 -21.43040 -19.85409 -19.39439 -17.67793 -17.15696 -16.54526 -16.48640 -16.06269 -16.02706 -15.48795 -14.87254 -14.68262 -14.41702 -14.31787 -13.96157 -13.69484 -13.25384 -13.07373 -12.89051 -12.74823 -12.57350 -12.47697 -12.19156 -11.85096 -11.68207 -11.59660 -11.51274 -11.37664 -11.08573 -10.97096 -10.87744 -10.75821 -10.57825 -10.50517 -10.18515 -9.48558 -9.31611 -9.00402 -8.66990 -8.32661 -8.30682 -7.89330 -6.27734 -4.36375 0.91415 1.37464 2.92930 3.14239 3.23505 3.29161 3.31021 3.58134 3.93369 4.27956 4.48374 4.51788 4.68031 4.73112 4.82917 4.96871 5.00557 5.03705 5.04608 5.23210 5.27770 5.31612 5.40384 5.47180 5.58168 5.68980 5.70374 5.73653 5.82318 5.90551 5.99892 6.11559 6.16427 6.29765 6.43232 6.50778 6.58728 6.75650 6.85461 6.96485 7.26304 7.27749 7.37358 7.73338 8.01462 8.17144 8.64027 8.69641 9.29419 9.38337 10.80113 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.003004 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.436322 B = 9318.794361 C =10330.355683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.059 3.941 4 O -0.313 6.313 5 C 0.121 3.879 6 C -0.194 4.194 7 C -0.090 4.090 8 C -0.103 4.103 9 C -0.080 4.080 10 C 0.560 3.440 11 O -0.544 6.544 12 N -0.603 5.603 13 C 0.097 3.903 14 C -0.119 4.119 15 C 0.248 3.752 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.103 3.897 26 C -0.130 4.130 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.382 0.618 42 H 0.271 0.729 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 -1.266 -0.287 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.017 4.017 4 O -0.227 6.227 5 C 0.076 3.924 6 C -0.213 4.213 7 C -0.108 4.108 8 C -0.122 4.122 9 C -0.083 4.083 10 C 0.349 3.651 11 O -0.424 6.424 12 N -0.335 5.335 13 C -0.026 4.026 14 C -0.156 4.156 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.018 4.018 26 C -0.148 4.148 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.232 0.768 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.107 -1.108 -0.209 22.136 hybrid contribution 1.096 0.638 -0.104 1.273 sum -21.011 -0.470 -0.312 21.018 Atomic orbital electron populations 1.21691 0.94319 1.02545 1.02123 1.21494 0.95924 0.94858 1.03977 1.22867 0.78627 0.98865 1.01308 1.86079 1.21103 1.26762 1.88804 1.18809 0.91938 0.84202 0.97482 1.21357 0.99936 0.92455 1.07504 1.20867 0.94231 0.97060 0.98681 1.21165 0.93252 0.98236 0.99581 1.19884 0.93591 0.93251 1.01549 1.17857 0.85865 0.82502 0.78919 1.90754 1.72771 1.30614 1.48223 1.48718 1.09679 1.18746 1.56327 1.22664 0.97451 0.86926 0.95547 1.22826 0.93926 1.01130 0.97765 1.19502 0.91773 0.82417 0.85521 1.86109 1.59603 1.46636 1.46974 1.21451 0.93624 1.47845 0.94679 0.91567 1.25070 0.99381 0.93598 0.95220 1.69681 1.28095 1.46445 1.09068 0.86456 0.81705 0.78726 0.79988 1.20036 1.21087 1.19987 1.23069 0.75086 1.01684 1.01942 1.21171 0.91813 0.98875 1.02988 0.91703 0.92426 0.92395 0.90642 0.90696 0.92110 0.92070 0.85454 0.85285 0.84755 0.91242 0.91378 0.90352 0.90385 0.76753 0.91929 0.91254 0.91435 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.04 16 3 C 0.06 0.48 4.74 37.16 0.18 0.66 16 4 O -0.31 -3.78 10.13 -19.44 -0.20 -3.98 16 5 C 0.12 1.58 6.68 -39.27 -0.26 1.31 16 6 C -0.19 -2.14 9.03 -39.35 -0.36 -2.50 16 7 C -0.09 -1.03 10.03 -39.66 -0.40 -1.42 16 8 C -0.10 -1.49 9.59 -39.17 -0.38 -1.86 16 9 C -0.08 -1.33 5.67 -104.98 -0.59 -1.93 16 10 C 0.56 11.67 7.64 -12.32 -0.09 11.57 16 11 O -0.54 -13.07 16.93 5.32 0.09 -12.98 16 12 N -0.60 -12.70 3.32 -171.48 -0.57 -13.27 16 13 C 0.10 1.74 4.99 -2.41 -0.01 1.73 16 14 C -0.12 -2.36 6.24 -24.47 -0.15 -2.52 16 15 C 0.25 5.98 0.85 -89.94 -0.08 5.91 16 16 O -0.58 -14.56 13.07 -35.23 -0.46 -15.02 16 17 C -0.54 -14.03 8.13 -34.44 -0.28 -14.31 16 18 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 20 N -0.89 -23.85 10.96 55.43 0.61 -23.24 16 21 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.10 2.52 5.24 -3.06 -0.02 2.51 16 26 C -0.13 -1.95 8.01 -39.02 -0.31 -2.27 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 33 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 34 H 0.13 1.04 6.28 -52.49 -0.33 0.71 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.92 7.84 -52.49 -0.41 1.51 16 37 H 0.07 1.20 6.84 -51.93 -0.36 0.85 16 38 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 39 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.38 9.75 7.45 45.56 0.34 10.09 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.07 1.85 7.81 -51.93 -0.41 1.44 16 44 H 0.07 1.78 7.92 -51.93 -0.41 1.37 16 45 H 0.15 2.27 4.61 -52.49 -0.24 2.03 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -30.08 365.54 -8.58 -38.66 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.89 Total: 11.63 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.65 Total: -2.79 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.04 Total: -36.51 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.57 Total: -31.98 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.08 -8.58 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.039 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds