Wall clock time and date at job start Tue Mar 31 2020 12:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47342 * 2 1 4 4 N 1.46503 * 109.47351 * 300.00203 * 3 2 1 5 5 C 1.34769 * 120.00513 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99978 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00028 * 179.97438 * 5 4 3 8 8 C 1.53008 * 109.46892 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47042 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47018 * 179.97438 * 9 8 7 11 11 H 1.07990 * 120.00187 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99886 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00068 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99965 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46914 * 89.99991 * 14 12 10 16 16 H 1.48504 * 109.47171 * 209.99946 * 14 12 10 17 17 H 1.48495 * 109.47353 * 329.99881 * 14 12 10 18 18 C 1.50706 * 109.47215 * 240.00180 * 2 1 3 19 19 O 1.20825 * 119.99859 * 359.97438 * 18 2 1 20 20 O 1.34224 * 120.00295 * 180.02562 * 18 2 1 21 21 C 1.50705 * 109.47103 * 120.00083 * 2 1 3 22 22 C 1.38236 * 119.99739 * 239.72274 * 21 2 1 23 23 C 1.38238 * 119.99639 * 179.78605 * 22 21 2 24 24 C 1.38235 * 119.99902 * 0.45082 * 23 22 21 25 25 C 1.38228 * 119.99966 * 359.80478 * 24 23 22 26 26 C 1.38231 * 120.00395 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46861 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47151 * 299.99682 * 1 2 3 29 29 H 1.08997 * 109.47192 * 59.99735 * 1 2 3 30 30 H 1.09004 * 109.47195 * 59.99790 * 3 2 1 31 31 H 1.08995 * 109.47425 * 179.97438 * 3 2 1 32 32 H 0.97003 * 119.99498 * 0.02562 * 4 3 2 33 33 H 1.08994 * 109.47407 * 299.99963 * 7 5 4 34 34 H 1.08998 * 109.46978 * 60.00604 * 7 5 4 35 35 H 1.08994 * 109.46974 * 300.00117 * 8 7 5 36 36 H 1.08998 * 109.46907 * 60.00449 * 8 7 5 37 37 H 1.09003 * 109.47236 * 300.00726 * 9 8 7 38 38 H 1.09005 * 109.47162 * 59.99894 * 9 8 7 39 39 H 0.97008 * 119.99780 * 179.97438 * 13 12 10 40 40 H 0.96700 * 117.00196 * 179.97438 * 20 18 2 41 41 H 1.07995 * 120.00299 * 0.02562 * 22 21 2 42 42 H 1.08002 * 119.99653 * 180.27422 * 23 22 21 43 43 H 1.08000 * 119.99809 * 179.83254 * 24 23 22 44 44 H 1.08007 * 120.00049 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.00490 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1332 -1.1962 5 6 1.8768 3.4236 -1.4092 6 8 2.5741 4.0130 -0.6109 7 6 1.3749 4.1338 -2.6399 8 6 1.8849 5.5764 -2.6399 9 6 1.3759 6.2973 -3.8897 10 6 1.8777 7.7183 -3.8894 11 1 2.4979 8.0717 -3.0790 12 6 1.5449 8.5671 -4.9236 13 7 1.9832 9.8071 -4.9235 14 14 0.4714 7.9559 -6.3249 15 1 -0.9564 8.1981 -5.9966 16 1 0.8230 8.6830 -7.5712 17 1 0.6943 6.5010 -6.5210 18 6 2.0323 -0.7104 -1.2305 19 8 1.2472 -1.1699 -2.0256 20 8 3.3520 -0.8335 -1.4427 21 6 2.0323 -0.7104 1.2305 22 6 2.8318 -0.0403 2.1375 23 6 3.2889 -0.6907 3.2684 24 6 2.9543 -2.0139 3.4876 25 6 2.1592 -2.6855 2.5779 26 6 1.6983 -2.0338 1.4493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 0.9936 1.6618 -1.8344 33 1 1.7390 3.6202 -3.5297 34 1 0.2850 4.1334 -2.6405 35 1 1.5212 6.0902 -1.7501 36 1 2.9749 5.5763 -2.6395 37 1 1.7399 5.7831 -4.7793 38 1 0.2859 6.2972 -3.8906 39 1 1.7493 10.4042 -5.6514 40 1 3.6261 -1.2974 -2.2456 41 1 3.0960 0.9925 1.9646 42 1 3.9099 -0.1658 3.9793 43 1 3.3136 -2.5228 4.3698 44 1 1.8974 -3.7192 2.7493 45 1 1.0774 -2.5587 0.7383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594460298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:15 Heat of formation + Delta-G solvation = -144.109680 kcal Electronic energy + Delta-G solvation = -26266.141753 eV Core-core repulsion = 22439.828395 eV Total energy + Delta-G solvation = -3826.313358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21361 -40.65897 -40.06323 -37.48260 -37.05739 -36.10629 -34.46727 -34.06847 -31.98289 -30.74769 -30.13317 -27.96603 -26.15169 -25.13893 -23.55358 -23.14665 -22.10106 -21.39585 -20.84169 -19.18837 -18.95491 -18.44194 -18.13437 -17.34345 -16.99942 -16.79799 -16.49655 -16.20430 -15.77531 -15.66962 -15.38401 -14.88010 -14.79282 -14.65776 -14.55740 -14.20340 -13.85018 -13.81209 -13.71978 -13.26228 -13.13462 -12.99127 -12.70090 -12.64660 -12.61933 -12.48634 -12.09806 -11.85250 -11.78994 -11.73079 -11.57131 -11.49149 -11.32266 -10.87358 -10.74372 -10.24256 -9.86534 -9.75907 -8.27087 -6.32355 0.28804 0.44616 1.01373 1.38697 1.41893 1.53927 1.61754 1.90465 2.08673 2.39257 2.81415 3.07935 3.30060 3.39367 3.62927 3.83877 4.01642 4.08606 4.14838 4.19275 4.24811 4.27363 4.44748 4.52898 4.59851 4.60300 4.69269 4.77487 4.82950 4.91648 4.96495 4.98864 5.05201 5.08778 5.10639 5.26733 5.47815 5.50868 5.53933 5.57359 5.59968 5.60962 5.68688 6.03290 6.31280 6.39556 6.76324 6.85940 7.18283 7.31851 8.90396 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.002333 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.529911 B =11996.829602 C =12608.039486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 C 0.130 3.870 4 N -0.725 5.725 5 C 0.519 3.481 6 O -0.577 6.577 7 C -0.134 4.134 8 C -0.080 4.080 9 C -0.010 4.010 10 C -0.538 4.538 11 H 0.021 0.979 12 C -0.004 4.004 13 N -0.956 5.956 14 Si 0.961 3.039 15 H -0.264 1.264 16 H -0.286 1.286 17 H -0.237 1.237 18 C 0.494 3.506 19 O -0.528 6.528 20 O -0.508 6.508 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.119 4.119 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.428 0.572 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -33.186 13.955 36.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.012 4.012 3 C 0.006 3.994 4 N -0.379 5.379 5 C 0.307 3.693 6 O -0.456 6.456 7 C -0.173 4.173 8 C -0.118 4.118 9 C -0.048 4.048 10 C -0.576 4.576 11 H 0.039 0.961 12 C -0.200 4.200 13 N -0.597 5.597 14 Si 0.783 3.217 15 H -0.189 1.189 16 H -0.212 1.212 17 H -0.160 1.160 18 C 0.337 3.663 19 O -0.417 6.417 20 O -0.322 6.322 21 C -0.086 4.086 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.137 4.137 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.248 0.752 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.290 0.710 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.401 -32.551 14.572 35.745 hybrid contribution -0.034 0.119 -1.334 1.340 sum -2.435 -32.432 13.237 35.114 Atomic orbital electron populations 1.21867 0.88791 1.04297 1.04054 1.19605 0.98745 0.93465 0.89411 1.21485 0.99827 0.88897 0.89166 1.46000 1.54360 1.11892 1.25690 1.21072 0.79036 0.81514 0.87688 1.90696 1.39342 1.67007 1.48560 1.21745 1.04009 0.95651 0.95902 1.21041 0.99414 0.93391 0.97990 1.19559 0.96659 0.93404 0.95161 1.21548 1.31614 0.97188 1.07247 0.96062 1.26187 0.97563 0.94699 1.01530 1.70108 1.47909 1.07336 1.34343 0.85512 0.78814 0.80189 0.77208 1.18899 1.21246 1.16044 1.23197 0.80465 0.76190 0.86458 1.90737 1.57409 1.46684 1.46910 1.84528 1.25102 1.72875 1.49647 1.19197 0.99990 0.94754 0.94622 1.21319 0.97072 1.00759 0.94669 1.21457 0.99803 0.95438 0.97328 1.21552 0.97431 0.94636 0.99930 1.21411 0.97541 1.01007 0.93837 1.21102 1.00258 0.93639 0.98679 0.90548 0.89553 0.90915 0.89339 0.90666 0.75241 0.86854 0.86340 0.94161 0.94375 0.95285 0.95266 0.92535 0.71017 0.85329 0.84162 0.83665 0.83762 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.40 71.98 0.53 -1.24 16 2 C -0.01 -0.17 0.56 -53.67 -0.03 -0.20 16 3 C 0.13 2.47 3.16 86.38 0.27 2.74 16 4 N -0.73 -15.09 5.00 -463.07 -2.32 -17.41 16 5 C 0.52 15.14 7.83 87.66 0.69 15.83 16 6 O -0.58 -22.18 15.98 -3.03 -0.05 -22.23 16 7 C -0.13 -3.82 5.70 29.85 0.17 -3.65 16 8 C -0.08 -3.32 4.44 30.60 0.14 -3.18 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.54 -32.38 9.66 25.60 0.25 -32.13 16 11 H 0.02 1.43 7.99 -2.92 -0.02 1.41 16 12 C 0.00 -0.23 5.47 84.65 0.46 0.23 16 13 N -0.96 -61.88 13.96 21.45 0.30 -61.58 16 14 Si 0.96 44.22 27.47 68.60 1.88 46.11 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 18 C 0.49 8.50 5.81 71.24 0.41 8.92 16 19 O -0.53 -11.02 16.74 21.97 0.37 -10.66 16 20 O -0.51 -7.49 13.24 -51.35 -0.68 -8.17 16 21 C -0.08 -1.28 4.69 -19.86 -0.09 -1.38 16 22 C -0.12 -1.83 8.98 22.27 0.20 -1.63 16 23 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 24 C -0.12 -1.26 10.05 22.27 0.22 -1.03 16 25 C -0.12 -1.33 10.05 22.27 0.22 -1.10 16 26 C -0.12 -1.60 8.82 22.27 0.20 -1.40 16 27 H 0.08 0.97 7.35 -2.39 -0.02 0.95 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 0.96 6.82 -2.39 -0.02 0.95 16 30 H 0.09 1.70 7.53 -2.39 -0.02 1.68 16 31 H 0.08 1.61 7.47 -2.39 -0.02 1.60 16 32 H 0.41 6.83 6.89 -92.71 -0.64 6.19 16 33 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 38 H 0.03 1.27 7.57 -2.38 -0.02 1.25 16 39 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 40 H 0.43 2.82 9.10 -74.06 -0.67 2.14 16 41 H 0.13 1.99 5.89 -2.91 -0.02 1.97 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 45 H 0.12 1.52 7.58 -2.91 -0.02 1.50 16 Total: -1.00 -81.31 374.34 3.14 -78.16 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.35 Total: 16.70 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.99 Total: -20.92 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.02 Total: -78.99 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.36 Total: -41.06 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -81.31 3.14 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594460298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.945 kcal (2) G-P(sol) polarization free energy of solvation -81.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds