Wall clock time and date at job start Tue Mar 31 2020 13:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00433 * 2 1 4 4 C 1.52993 * 109.47656 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47174 * 65.00030 * 4 3 2 6 6 C 1.46505 * 120.00306 * 264.72991 * 5 4 3 7 7 C 1.50704 * 109.46970 * 273.78510 * 6 5 4 8 8 H 1.07994 * 119.99618 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99594 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00275 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99566 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47110 * 59.99936 * 11 9 7 13 13 H 1.48497 * 109.47178 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47355 * 299.99928 * 11 9 7 15 15 C 1.34780 * 120.00174 * 84.72546 * 5 4 3 16 16 O 1.21584 * 119.99928 * 3.32964 * 15 5 4 17 17 C 1.47598 * 120.00255 * 183.32456 * 15 5 4 18 18 C 1.39758 * 120.26688 * 129.51937 * 17 15 5 19 19 C 1.37466 * 120.20281 * 179.78989 * 18 17 15 20 20 C 1.39591 * 120.42493 * 0.02562 * 19 18 17 21 21 C 1.39182 * 119.11218 * 0.33820 * 20 19 18 22 22 C 1.37307 * 120.93073 * 359.48626 * 21 20 19 23 23 C 1.51680 * 106.99358 * 179.45779 * 21 20 19 24 24 C 1.54697 * 101.90599 * 344.60186 * 23 21 20 25 25 H 1.08996 * 110.74488 * 143.67641 * 24 23 21 26 26 C 1.53000 * 110.74422 * 267.01910 * 24 23 21 27 27 O 1.35998 * 129.70678 * 181.01570 * 20 19 18 28 28 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46890 * 299.99832 * 1 2 3 30 30 H 1.09000 * 109.46883 * 59.99717 * 1 2 3 31 31 H 1.09004 * 109.46646 * 60.00103 * 3 2 1 32 32 H 1.09004 * 109.46769 * 300.00584 * 3 2 1 33 33 H 1.08998 * 109.47237 * 305.00708 * 4 3 2 34 34 H 1.09003 * 109.47377 * 185.00076 * 4 3 2 35 35 H 1.08999 * 109.46865 * 33.78312 * 6 5 4 36 36 H 1.09002 * 109.47233 * 153.78324 * 6 5 4 37 37 H 0.97008 * 120.00329 * 179.97438 * 10 9 7 38 38 H 1.07999 * 119.89465 * 359.80738 * 18 17 15 39 39 H 1.08001 * 119.78649 * 180.02562 * 19 18 17 40 40 H 1.07994 * 120.07173 * 180.33245 * 22 21 20 41 41 H 1.08998 * 110.93869 * 102.75329 * 23 21 20 42 42 H 1.08997 * 110.94371 * 226.44729 * 23 21 20 43 43 H 1.08992 * 109.47104 * 59.99957 * 26 24 23 44 44 H 1.09009 * 109.46789 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.46817 * 299.99461 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2165 -0.8795 -1.3100 7 6 5.6274 -1.1714 -0.8682 8 1 6.2796 -0.3622 -0.5746 9 6 6.0856 -2.4715 -0.8388 10 7 5.2912 -3.4568 -1.1958 11 14 7.8347 -2.8332 -0.2919 12 1 8.0273 -2.3533 1.1003 13 1 8.0784 -4.2969 -0.3485 14 1 8.7888 -2.1368 -1.1919 15 6 4.1591 1.3222 -2.3521 16 8 4.0180 2.5282 -2.2897 17 6 4.5313 0.6881 -3.6319 18 6 3.8169 0.9804 -4.7970 19 6 4.1674 0.3923 -5.9890 20 6 5.2380 -0.5015 -6.0485 21 6 5.9410 -0.7945 -4.8835 22 6 5.6014 -0.2100 -3.6884 23 6 7.0217 -1.7912 -5.2567 24 6 6.5433 -2.2756 -6.6457 25 1 7.3919 -2.4520 -7.3065 26 6 5.6855 -3.5357 -6.5144 27 8 5.7542 -1.1693 -7.1148 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5681 0.8408 34 1 3.9785 2.1765 0.0889 35 1 3.5159 -1.3911 -0.6499 36 1 4.0757 -1.2312 -2.3320 37 1 5.6137 -4.3715 -1.1755 38 1 2.9870 1.6705 -4.7606 39 1 3.6109 0.6233 -6.8853 40 1 6.1598 -0.4433 -2.7939 41 1 7.9938 -1.3033 -5.3278 42 1 7.0528 -2.6167 -4.5456 43 1 4.8134 -3.3189 -5.8977 44 1 5.3605 -3.8587 -7.5035 45 1 6.2722 -4.3275 -6.0486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597135794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:45 Heat of formation + Delta-G solvation = -85.474281 kcal Electronic energy + Delta-G solvation = -28034.556798 eV Core-core repulsion = 24210.786062 eV Total energy + Delta-G solvation = -3823.770736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89540 -39.30517 -37.49252 -36.50329 -34.95304 -32.86452 -32.65626 -30.69257 -30.47871 -28.95863 -27.15683 -26.47111 -25.94424 -23.60907 -22.87656 -22.19562 -21.25081 -21.16145 -18.61784 -17.01250 -16.63240 -16.50609 -16.36059 -15.89063 -15.71521 -15.51802 -15.10818 -14.57374 -14.49967 -14.00069 -13.74386 -13.51943 -13.13289 -13.11704 -12.70098 -12.39521 -12.29168 -12.14591 -11.98982 -11.84961 -11.83889 -11.67561 -11.50683 -11.37424 -11.02355 -10.95338 -10.86788 -10.63574 -10.42680 -10.27470 -10.10478 -9.76130 -9.40215 -9.08565 -8.59111 -8.31776 -7.76578 -7.61459 -6.19622 -4.26553 1.54423 1.88016 3.19160 3.25134 3.27337 3.35033 3.56025 3.89812 4.14349 4.23972 4.35708 4.71361 4.88593 5.06669 5.09811 5.29548 5.33615 5.37612 5.39545 5.49337 5.52061 5.65979 5.67583 5.72363 5.78795 5.79385 5.85205 5.87246 5.98091 6.08546 6.19093 6.22394 6.30697 6.37001 6.51020 6.65879 6.83438 6.88265 6.97535 7.14783 7.35220 7.48762 7.56063 7.60322 7.76780 8.06873 8.36312 8.77304 9.00072 9.38113 10.85699 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.005949 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.289595 B = 4705.846867 C = 6398.818147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.123 3.877 5 N -0.581 5.581 6 C 0.236 3.764 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.887 3.113 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.562 3.438 16 O -0.575 6.575 17 C -0.148 4.148 18 C -0.045 4.045 19 C -0.158 4.158 20 C 0.114 3.886 21 C -0.178 4.178 22 C -0.016 4.016 23 C -0.105 4.105 24 C 0.078 3.922 25 H 0.110 0.890 26 C -0.170 4.170 27 O -0.305 6.305 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.169 0.831 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 2.124 -5.417 6.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.030 4.030 4 C -0.001 4.001 5 N -0.309 5.309 6 C 0.116 3.884 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.133 4.133 10 N -0.516 5.516 11 Si 0.714 3.286 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.351 3.649 16 O -0.457 6.457 17 C -0.151 4.151 18 C -0.064 4.064 19 C -0.177 4.177 20 C 0.069 3.931 21 C -0.178 4.178 22 C -0.034 4.034 23 C -0.142 4.142 24 C 0.022 3.978 25 H 0.128 0.872 26 C -0.227 4.227 27 O -0.219 6.219 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.186 0.814 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.689 2.351 -5.613 6.653 hybrid contribution 0.743 -0.343 0.470 0.943 sum -1.946 2.008 -5.143 5.854 Atomic orbital electron populations 1.22676 0.82178 1.02350 0.99184 1.88045 1.18649 1.27537 1.95210 1.23029 0.95313 0.84869 0.99828 1.21330 0.91004 0.99603 0.88147 1.48101 1.63378 1.11180 1.08281 1.19588 0.96425 0.73252 0.99115 1.21451 0.97861 0.92672 1.46065 0.92065 1.24898 0.97533 0.95997 0.94869 1.69934 1.35671 0.99723 1.46305 0.86732 0.84811 0.77341 0.79723 1.20031 1.21083 1.19936 1.18204 0.76683 0.86005 0.83987 1.90672 1.54685 1.14343 1.86021 1.19668 1.00048 1.01622 0.93784 1.20710 0.98277 0.96988 0.90420 1.19940 0.97464 1.01753 0.98531 1.19785 0.93156 0.93831 0.86328 1.20584 0.99517 1.03581 0.94156 1.21479 0.94484 0.89311 0.98090 1.21820 0.97519 0.98579 0.96253 1.23395 0.92995 0.86128 0.95303 0.87186 1.22227 1.01306 0.96648 1.02523 1.86774 1.64290 1.40935 1.29936 0.89915 0.94711 0.94647 0.93182 0.93307 0.89163 0.89591 0.93628 0.93966 0.92479 0.85373 0.85771 0.81379 0.89663 0.88432 0.91310 0.91917 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.75 10.04 -35.23 -0.35 -7.10 16 3 C 0.05 0.78 6.24 37.15 0.23 1.02 16 4 C 0.12 2.28 5.79 -4.05 -0.02 2.26 16 5 N -0.58 -12.49 2.41 -176.26 -0.43 -12.91 16 6 C 0.24 5.63 4.58 -5.19 -0.02 5.61 16 7 C -0.54 -13.48 6.62 -34.44 -0.23 -13.71 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.88 -23.22 13.28 55.43 0.74 -22.48 16 11 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 15 C 0.56 12.30 7.18 -12.44 -0.09 12.21 16 16 O -0.57 -13.28 16.69 5.29 0.09 -13.20 16 17 C -0.15 -3.06 4.82 -104.92 -0.51 -3.56 16 18 C -0.05 -0.82 9.71 -39.29 -0.38 -1.20 16 19 C -0.16 -2.66 10.05 -39.36 -0.40 -3.06 16 20 C 0.11 2.03 6.91 -38.73 -0.27 1.76 16 21 C -0.18 -3.33 6.25 -104.13 -0.65 -3.98 16 22 C -0.02 -0.33 7.64 -39.33 -0.30 -0.63 16 23 C -0.10 -1.64 6.65 -26.51 -0.18 -1.82 16 24 C 0.08 1.07 4.31 -25.84 -0.11 0.95 16 25 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 26 C -0.17 -2.22 9.50 37.16 0.35 -1.86 16 27 O -0.31 -4.98 10.81 -19.74 -0.21 -5.19 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.68 8.03 -51.93 -0.42 1.26 16 34 H 0.09 1.53 7.54 -51.93 -0.39 1.13 16 35 H 0.05 1.19 7.56 -51.93 -0.39 0.80 16 36 H 0.04 1.07 5.75 -51.93 -0.30 0.78 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.17 3.82 4.84 -52.49 -0.25 3.57 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.10 1.59 7.92 -51.93 -0.41 1.18 16 43 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 44 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -29.26 372.06 -7.92 -37.18 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.78 Total: 6.29 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.55 Total: -2.75 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.31 Total: -35.40 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.48 Total: -25.49 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.26 -7.92 -37.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597135794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.298 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds