Wall clock time and date at job start Tue Mar 31 2020 13:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00433 * 2 1 4 4 C 1.52993 * 109.47656 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47174 * 65.00030 * 4 3 2 6 6 C 1.46505 * 120.00306 * 264.72991 * 5 4 3 7 7 C 1.50704 * 109.46970 * 273.78510 * 6 5 4 8 8 H 1.07994 * 119.99618 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99594 * 179.97438 * 7 6 5 10 10 N 1.31505 * 120.00275 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99566 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47110 * 59.99936 * 11 9 7 13 13 H 1.48497 * 109.47178 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47355 * 299.99928 * 11 9 7 15 15 C 1.34780 * 120.00174 * 84.72546 * 5 4 3 16 16 O 1.21584 * 119.99928 * 3.32964 * 15 5 4 17 17 C 1.47598 * 120.00255 * 183.32456 * 15 5 4 18 18 C 1.39758 * 120.26688 * 129.51937 * 17 15 5 19 19 C 1.37466 * 120.20281 * 179.78989 * 18 17 15 20 20 C 1.39591 * 120.42493 * 0.02562 * 19 18 17 21 21 C 1.39182 * 119.11218 * 0.33820 * 20 19 18 22 22 C 1.37307 * 120.93073 * 359.48626 * 21 20 19 23 23 C 1.51680 * 106.99358 * 179.45779 * 21 20 19 24 24 C 1.54697 * 101.90599 * 344.60186 * 23 21 20 25 25 H 1.08996 * 110.74488 * 143.67641 * 24 23 21 26 26 C 1.53000 * 110.74422 * 267.01910 * 24 23 21 27 27 O 1.35998 * 129.70678 * 181.01570 * 20 19 18 28 28 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46890 * 299.99832 * 1 2 3 30 30 H 1.09000 * 109.46883 * 59.99717 * 1 2 3 31 31 H 1.09004 * 109.46646 * 60.00103 * 3 2 1 32 32 H 1.09004 * 109.46769 * 300.00584 * 3 2 1 33 33 H 1.08998 * 109.47237 * 305.00708 * 4 3 2 34 34 H 1.09003 * 109.47377 * 185.00076 * 4 3 2 35 35 H 1.08999 * 109.46865 * 33.78312 * 6 5 4 36 36 H 1.09002 * 109.47233 * 153.78324 * 6 5 4 37 37 H 0.97008 * 120.00329 * 179.97438 * 10 9 7 38 38 H 1.07999 * 119.89465 * 359.80738 * 18 17 15 39 39 H 1.08001 * 119.78649 * 180.02562 * 19 18 17 40 40 H 1.07994 * 120.07173 * 180.33245 * 22 21 20 41 41 H 1.08998 * 110.93869 * 102.75329 * 23 21 20 42 42 H 1.08997 * 110.94371 * 226.44729 * 23 21 20 43 43 H 1.08992 * 109.47104 * 59.99957 * 26 24 23 44 44 H 1.09009 * 109.46789 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.46817 * 299.99461 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2165 -0.8795 -1.3100 7 6 5.6274 -1.1714 -0.8682 8 1 6.2796 -0.3622 -0.5746 9 6 6.0856 -2.4715 -0.8388 10 7 5.2912 -3.4568 -1.1958 11 14 7.8347 -2.8332 -0.2919 12 1 8.0273 -2.3533 1.1003 13 1 8.0784 -4.2969 -0.3485 14 1 8.7888 -2.1368 -1.1919 15 6 4.1591 1.3222 -2.3521 16 8 4.0180 2.5282 -2.2897 17 6 4.5313 0.6881 -3.6319 18 6 3.8169 0.9804 -4.7970 19 6 4.1674 0.3923 -5.9890 20 6 5.2380 -0.5015 -6.0485 21 6 5.9410 -0.7945 -4.8835 22 6 5.6014 -0.2100 -3.6884 23 6 7.0217 -1.7912 -5.2567 24 6 6.5433 -2.2756 -6.6457 25 1 7.3919 -2.4520 -7.3065 26 6 5.6855 -3.5357 -6.5144 27 8 5.7542 -1.1693 -7.1148 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5681 0.8408 34 1 3.9785 2.1765 0.0889 35 1 3.5159 -1.3911 -0.6499 36 1 4.0757 -1.2312 -2.3320 37 1 5.6137 -4.3715 -1.1755 38 1 2.9870 1.6705 -4.7606 39 1 3.6109 0.6233 -6.8853 40 1 6.1598 -0.4433 -2.7939 41 1 7.9938 -1.3033 -5.3278 42 1 7.0528 -2.6167 -4.5456 43 1 4.8134 -3.3189 -5.8977 44 1 5.3605 -3.8587 -7.5035 45 1 6.2722 -4.3275 -6.0486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597135794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:44 Heat of formation + Delta-G solvation = -102.017506 kcal Electronic energy + Delta-G solvation = -28035.274166 eV Core-core repulsion = 24210.786062 eV Total energy + Delta-G solvation = -3824.488104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23409 -40.92704 -38.82397 -37.95519 -36.70937 -34.59971 -34.07435 -32.17276 -31.77931 -30.44957 -28.95872 -27.72599 -27.16783 -25.18499 -24.67008 -23.59081 -22.60424 -22.47126 -20.21939 -18.70924 -18.22453 -18.08942 -17.76830 -17.26434 -17.09401 -16.82868 -16.61002 -16.36005 -15.89193 -15.45290 -15.10535 -14.95650 -14.57162 -14.49491 -14.15964 -14.09414 -13.73082 -13.49465 -13.42161 -13.23982 -13.19107 -13.04770 -12.99398 -12.77651 -12.75451 -12.57376 -12.17874 -12.07912 -11.94767 -11.74654 -11.66405 -11.61460 -10.89038 -10.60721 -10.51339 -9.78578 -9.49312 -9.07833 -8.15576 -6.28993 0.06360 0.42912 1.42020 1.44107 1.50632 1.73379 2.20203 2.31315 2.45074 2.78296 2.93552 3.12657 3.50916 3.58750 3.80100 3.95261 4.00440 4.13778 4.21685 4.23278 4.27430 4.36984 4.38207 4.51886 4.54574 4.60866 4.62327 4.70358 4.80951 4.82853 4.87927 4.92828 4.94513 5.01472 5.13339 5.21405 5.24169 5.33420 5.45343 5.48844 5.62000 5.69853 5.85426 6.09893 6.20123 6.27423 6.56080 6.82522 7.24923 7.40584 8.89528 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.005949 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.289595 B = 4705.846867 C = 6398.818147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.584 5.584 6 C 0.261 3.739 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.908 5.908 11 Si 0.943 3.057 12 H -0.275 1.275 13 H -0.280 1.280 14 H -0.266 1.266 15 C 0.560 3.440 16 O -0.592 6.592 17 C -0.174 4.174 18 C -0.045 4.045 19 C -0.151 4.151 20 C 0.116 3.884 21 C -0.193 4.193 22 C -0.034 4.034 23 C -0.107 4.107 24 C 0.080 3.920 25 H 0.151 0.849 26 C -0.167 4.167 27 O -0.305 6.305 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.019 0.981 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 2.032 -6.723 7.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.022 4.022 4 C -0.008 4.008 5 N -0.312 5.312 6 C 0.140 3.860 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.167 4.167 10 N -0.546 5.546 11 Si 0.768 3.232 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.191 1.191 15 C 0.349 3.651 16 O -0.476 6.476 17 C -0.177 4.177 18 C -0.064 4.064 19 C -0.170 4.170 20 C 0.070 3.930 21 C -0.194 4.194 22 C -0.052 4.052 23 C -0.144 4.144 24 C 0.025 3.975 25 H 0.168 0.832 26 C -0.225 4.225 27 O -0.219 6.219 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.055 0.945 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.309 2.266 -6.909 7.629 hybrid contribution 0.586 -0.328 0.845 1.079 sum -1.723 1.938 -6.065 6.596 Atomic orbital electron populations 1.22877 0.79926 1.03362 1.00674 1.87995 1.21244 1.28344 1.95495 1.22931 0.93492 0.84738 1.01006 1.21536 0.92994 0.99495 0.86734 1.48100 1.63398 1.10283 1.09400 1.19092 0.95327 0.74427 0.97104 1.21507 0.98119 0.92692 1.45919 0.92824 1.25510 1.00807 0.95687 0.94732 1.70031 1.37306 1.00035 1.47230 0.85836 0.80820 0.77303 0.79199 1.20055 1.20555 1.19105 1.18443 0.76282 0.85850 0.84479 1.90638 1.55733 1.14818 1.86381 1.19746 1.01125 1.02737 0.94126 1.20918 0.98329 0.97137 0.90015 1.20277 0.97046 1.00513 0.99137 1.19961 0.93008 0.93726 0.86336 1.20892 1.00701 1.03913 0.93893 1.21229 0.95131 0.90745 0.98116 1.21939 0.97583 0.97632 0.97269 1.23692 0.93801 0.85315 0.94708 0.83190 1.22230 1.00192 0.96832 1.03209 1.86778 1.64337 1.41431 1.29359 0.89260 0.92264 0.94004 0.89728 0.94151 0.89674 0.88874 0.96294 0.95835 0.92349 0.83781 0.82470 0.83919 0.87980 0.89586 0.94452 0.89825 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.84 10.04 -148.98 -1.50 -16.33 16 3 C 0.06 1.83 6.24 71.98 0.45 2.28 16 4 C 0.12 4.37 5.79 86.38 0.50 4.87 16 5 N -0.58 -26.03 2.41 -829.83 -2.00 -28.03 16 6 C 0.26 13.06 4.58 85.63 0.39 13.45 16 7 C -0.54 -28.00 6.62 25.60 0.17 -27.83 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.03 1.77 5.46 84.66 0.46 2.23 16 10 N -0.91 -49.05 13.28 21.45 0.28 -48.76 16 11 Si 0.94 40.45 29.54 68.60 2.03 42.47 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 15 C 0.56 25.21 7.18 86.71 0.62 25.83 16 16 O -0.59 -27.79 16.69 -3.98 -0.07 -27.85 16 17 C -0.17 -7.38 4.82 -20.06 -0.10 -7.48 16 18 C -0.05 -1.62 9.71 22.46 0.22 -1.40 16 19 C -0.15 -4.86 10.05 22.41 0.23 -4.63 16 20 C 0.12 3.96 6.91 22.82 0.16 4.12 16 21 C -0.19 -7.26 6.25 -19.54 -0.12 -7.38 16 22 C -0.03 -1.46 7.64 22.43 0.17 -1.29 16 23 C -0.11 -3.26 6.65 30.74 0.20 -3.06 16 24 C 0.08 1.99 4.31 31.17 0.13 2.12 16 25 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 26 C -0.17 -4.06 9.50 71.98 0.68 -3.37 16 27 O -0.30 -9.19 10.81 -93.53 -1.01 -10.20 16 28 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 3.27 8.03 -2.39 -0.02 3.25 16 34 H 0.09 3.35 7.54 -2.39 -0.02 3.34 16 35 H 0.02 1.04 7.56 -2.39 -0.02 1.02 16 36 H 0.02 1.27 5.75 -2.39 -0.01 1.25 16 37 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 38 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.14 6.82 4.84 -2.91 -0.01 6.81 16 41 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.09 2.80 7.92 -2.39 -0.02 2.78 16 43 H 0.04 1.13 8.07 -2.39 -0.02 1.11 16 44 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -64.41 372.06 4.14 -60.27 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.98 Total: 28.01 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.42 Total: 0.43 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.72 Total: -76.79 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -2.57 Total: -54.38 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -64.41 4.14 -60.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597135794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.751 kcal (2) G-P(sol) polarization free energy of solvation -64.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds