Wall clock time and date at job start Tue Mar 31 2020 13:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00364 * 2 1 4 4 C 1.52996 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47077 * 65.00390 * 4 3 2 6 6 C 1.46500 * 119.99688 * 285.87027 * 5 4 3 7 7 C 1.50697 * 109.47534 * 274.82252 * 6 5 4 8 8 H 1.08002 * 119.99439 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00398 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99826 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00402 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46625 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47653 * 119.99677 * 11 9 7 14 14 H 1.48501 * 109.47032 * 240.00303 * 11 9 7 15 15 C 1.34771 * 120.00381 * 105.87393 * 5 4 3 16 16 O 1.21579 * 120.00361 * 177.09647 * 15 5 4 17 17 C 1.47607 * 119.99743 * 357.37194 * 15 5 4 18 18 C 1.39753 * 120.26665 * 332.51671 * 17 15 5 19 19 C 1.37465 * 120.20078 * 180.18621 * 18 17 15 20 20 C 1.39588 * 120.43171 * 359.97438 * 19 18 17 21 21 C 1.39186 * 119.10310 * 359.64707 * 20 19 18 22 22 C 1.37308 * 120.93883 * 0.28045 * 21 20 19 23 23 C 1.51683 * 107.00338 * 180.97654 * 21 20 19 24 24 C 1.54704 * 101.91531 * 15.15823 * 23 21 20 25 25 H 1.09003 * 110.73871 * 216.37816 * 24 23 21 26 26 C 1.52997 * 110.74634 * 93.22108 * 24 23 21 27 27 O 1.36000 * 129.74001 * 179.06396 * 20 19 18 28 28 H 1.08995 * 109.47322 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47279 * 299.99977 * 1 2 3 30 30 H 1.09005 * 109.47327 * 59.99793 * 1 2 3 31 31 H 1.08999 * 109.46892 * 60.00055 * 3 2 1 32 32 H 1.08998 * 109.46934 * 300.00637 * 3 2 1 33 33 H 1.09002 * 109.47442 * 305.00039 * 4 3 2 34 34 H 1.09007 * 109.46990 * 185.00235 * 4 3 2 35 35 H 1.09004 * 109.47079 * 34.82728 * 6 5 4 36 36 H 1.09004 * 109.47278 * 154.82201 * 6 5 4 37 37 H 0.97002 * 119.99942 * 180.02562 * 10 9 7 38 38 H 1.07999 * 119.89803 * 0.16628 * 18 17 15 39 39 H 1.08005 * 119.78768 * 180.02562 * 19 18 17 40 40 H 1.07992 * 120.07379 * 179.89573 * 22 21 20 41 41 H 1.09000 * 110.94077 * 133.31022 * 23 21 20 42 42 H 1.08996 * 110.94138 * 256.96316 * 23 21 20 43 43 H 1.09005 * 109.47240 * 59.99937 * 26 24 23 44 44 H 1.08996 * 109.47061 * 179.97438 * 26 24 23 45 45 H 1.08996 * 109.47378 * 300.00034 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 3.7785 -0.8713 -1.4679 7 6 4.9277 -1.6330 -0.8596 8 1 5.7250 -1.1008 -0.3620 9 6 4.9614 -3.0090 -0.9382 10 7 3.9902 -3.6570 -1.5437 11 14 6.3855 -3.9533 -0.1834 12 1 7.3401 -2.9983 0.4348 13 1 5.8696 -4.8806 0.8554 14 1 7.0795 -4.7312 -1.2410 15 6 4.5619 1.3144 -2.2067 16 8 4.9748 0.7910 -3.2234 17 6 4.7083 2.7706 -2.0144 18 6 3.8057 3.4687 -1.2074 19 6 3.9410 4.8254 -1.0324 20 6 4.9792 5.5189 -1.6567 21 6 5.8796 4.8168 -2.4527 22 6 5.7545 3.4614 -2.6331 23 6 6.8932 5.8210 -2.9674 24 6 6.6444 7.0316 -2.0368 25 1 6.7606 7.9681 -2.5823 26 6 7.5839 6.9896 -0.8300 27 8 5.2783 6.8453 -1.6299 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8515 0.5680 0.8409 34 1 3.9786 2.1764 0.0890 35 1 2.8459 -1.1844 -0.9984 36 1 3.7331 -1.0756 -2.5377 37 1 4.0137 -4.6252 -1.5986 38 1 2.9993 2.9407 -0.7202 39 1 3.2399 5.3583 -0.4070 40 1 6.4601 2.9308 -3.2551 41 1 7.9091 5.4432 -2.8519 42 1 6.6918 6.0800 -4.0068 43 1 8.6181 7.0166 -1.1735 44 1 7.3915 7.8504 -0.1897 45 1 7.4119 6.0721 -0.2673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597135797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:47 Heat of formation + Delta-G solvation = -55.952116 kcal Electronic energy + Delta-G solvation = -27341.375335 eV Core-core repulsion = 23518.884776 eV Total energy + Delta-G solvation = -3822.490559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41169 -39.62088 -37.54311 -36.89132 -34.96166 -33.34146 -32.68958 -31.10111 -30.26173 -29.63527 -27.43348 -26.66103 -25.94277 -23.88467 -22.73978 -22.19983 -21.78092 -21.70361 -18.86312 -17.57635 -17.15537 -16.58972 -16.34434 -16.19971 -15.93416 -15.26547 -15.10439 -14.75048 -14.45917 -14.23538 -14.02053 -13.92010 -13.48904 -13.39093 -13.06699 -12.75969 -12.66284 -12.50423 -12.35635 -12.04972 -11.81988 -11.69855 -11.50714 -11.32549 -11.23455 -11.03645 -10.84892 -10.81196 -10.54340 -10.30455 -10.07483 -9.51208 -9.34992 -8.99301 -8.90111 -8.30178 -8.15929 -7.56813 -5.92401 -3.95396 1.01176 1.28899 3.01647 3.26131 3.36055 3.42999 3.47017 3.81739 4.05040 4.08978 4.20092 4.39991 4.54233 4.59212 4.77068 4.87882 4.88803 5.04269 5.20186 5.26927 5.33020 5.37128 5.41001 5.43262 5.47659 5.49236 5.58205 5.60580 5.62587 5.62662 5.67933 5.81040 5.95251 5.97759 6.13940 6.29071 6.31018 6.40404 6.47421 7.05583 7.35750 7.45783 7.59356 7.71380 8.06099 8.37415 8.49775 8.98030 9.13942 9.67489 11.15861 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.003784 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.552463 B = 7397.252921 C = 8699.385317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.038 3.962 4 C 0.084 3.916 5 N -0.579 5.579 6 C 0.241 3.759 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.545 3.455 16 O -0.538 6.538 17 C -0.144 4.144 18 C -0.083 4.083 19 C -0.147 4.147 20 C 0.117 3.883 21 C -0.182 4.182 22 C -0.016 4.016 23 C -0.105 4.105 24 C 0.076 3.924 25 H 0.115 0.885 26 C -0.172 4.172 27 O -0.300 6.300 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 21.609 3.243 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.040 4.040 4 C -0.040 4.040 5 N -0.310 5.310 6 C 0.122 3.878 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.332 3.668 16 O -0.416 6.416 17 C -0.147 4.147 18 C -0.101 4.101 19 C -0.165 4.165 20 C 0.072 3.928 21 C -0.183 4.183 22 C -0.035 4.035 23 C -0.142 4.142 24 C 0.020 3.980 25 H 0.133 0.867 26 C -0.229 4.229 27 O -0.214 6.214 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.432 21.125 2.730 21.305 hybrid contribution 0.654 -0.405 0.407 0.870 sum 0.222 20.720 3.136 20.957 Atomic orbital electron populations 1.22730 0.82175 1.02764 0.99035 1.88206 1.18651 1.26041 1.95030 1.23113 0.95076 0.86158 0.99605 1.22218 0.91740 1.00290 0.89735 1.48097 1.56863 1.11577 1.14413 1.19543 0.97875 0.71887 0.98466 1.21475 1.07146 0.91472 1.36021 0.92648 1.24891 0.96133 0.97496 0.95517 1.69956 1.32095 1.07945 1.43271 0.86501 0.82514 0.79847 0.78867 1.19923 1.21050 1.21031 1.18055 0.79242 0.85265 0.84217 1.90755 1.48944 1.73413 1.28519 1.20147 0.98004 0.95004 1.01577 1.21926 0.99264 0.93080 0.95804 1.20176 0.99602 0.93252 1.03519 1.19776 0.95598 0.83236 0.94234 1.20630 1.00433 0.94660 1.02589 1.20347 0.96166 0.91383 0.95639 1.21855 0.99404 0.92835 1.00086 1.23426 0.79996 0.99573 0.94959 0.86739 1.22254 0.99201 1.03399 0.98063 1.86834 1.29163 1.20907 1.84511 0.89623 0.94721 0.94561 0.92743 0.93247 0.89380 0.87761 0.92072 0.94175 0.92988 0.82659 0.85099 0.84688 0.88848 0.89055 0.90609 0.91409 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.45 8.24 -35.23 -0.29 -6.74 16 3 C 0.04 0.56 5.14 37.16 0.19 0.75 16 4 C 0.08 1.42 5.40 -4.05 -0.02 1.39 16 5 N -0.58 -12.74 2.50 -176.26 -0.44 -13.18 16 6 C 0.24 6.51 5.09 -5.20 -0.03 6.49 16 7 C -0.52 -15.22 9.38 -34.44 -0.32 -15.54 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 11 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.55 11.98 7.47 -12.44 -0.09 11.89 16 16 O -0.54 -14.09 16.20 5.30 0.09 -14.00 16 17 C -0.14 -2.45 5.52 -104.92 -0.58 -3.03 16 18 C -0.08 -1.13 7.41 -39.30 -0.29 -1.43 16 19 C -0.15 -1.79 10.05 -39.36 -0.40 -2.19 16 20 C 0.12 1.50 6.91 -38.73 -0.27 1.24 16 21 C -0.18 -2.37 6.25 -104.12 -0.65 -3.02 16 22 C -0.02 -0.25 9.58 -39.33 -0.38 -0.63 16 23 C -0.10 -0.98 6.65 -26.50 -0.18 -1.16 16 24 C 0.08 0.65 4.30 -25.84 -0.11 0.54 16 25 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 26 C -0.17 -1.28 9.51 37.16 0.35 -0.92 16 27 O -0.30 -3.52 10.82 -19.74 -0.21 -3.73 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 7.05 -51.93 -0.37 0.31 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.10 1.46 4.15 -51.92 -0.22 1.25 16 35 H 0.06 1.69 5.71 -51.93 -0.30 1.40 16 36 H 0.04 1.23 7.32 -51.93 -0.38 0.85 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.16 1.93 2.78 -52.49 -0.15 1.78 16 39 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 40 H 0.14 2.14 7.89 -52.49 -0.41 1.73 16 41 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -35.78 365.41 -7.81 -43.59 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.42 Total: 0.11 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.75 Total: -2.43 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.30 Total: -39.63 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.42 Total: -24.47 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.78 -7.81 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597135797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.364 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds