Wall clock time and date at job start Tue Mar 31 2020 13:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.44533 * 2 1 4 4 C 1.53036 * 109.46433 * 240.02822 * 2 1 3 5 5 C 1.53189 * 109.31381 * 178.61241 * 4 2 1 6 6 N 1.46920 * 108.77579 * 54.63900 * 5 4 2 7 7 S 1.65608 * 120.63508 * 126.40912 * 6 5 4 8 8 O 1.42101 * 104.27205 * 26.05252 * 7 6 5 9 9 O 1.42091 * 104.27764 * 153.90826 * 7 6 5 10 10 C 1.81395 * 104.44948 * 269.97994 * 7 6 5 11 11 C 1.53001 * 109.47120 * 179.97438 * 10 7 6 12 12 C 1.53004 * 109.47173 * 300.00202 * 11 10 7 13 13 C 1.52998 * 109.47182 * 59.99988 * 11 10 7 14 14 C 1.50700 * 109.47274 * 180.02562 * 11 10 7 15 15 H 1.08000 * 120.00107 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99919 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00043 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00015 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47209 * 59.99560 * 18 16 14 20 20 H 1.48496 * 109.47296 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46941 * 299.99751 * 18 16 14 22 22 C 1.46931 * 118.73768 * 306.39281 * 6 5 4 23 23 C 1.53040 * 109.45692 * 119.95885 * 2 1 3 24 24 H 1.09005 * 109.52522 * 61.42581 * 23 2 1 25 25 C 1.52997 * 109.50138 * 301.34039 * 23 2 1 26 26 O 1.42898 * 109.47319 * 175.16419 * 25 23 2 27 27 H 1.08994 * 109.47504 * 300.04080 * 1 2 3 28 28 H 1.09000 * 109.47158 * 60.04231 * 1 2 3 29 29 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.49877 * 58.66323 * 4 2 1 31 31 H 1.09001 * 109.49912 * 298.56814 * 4 2 1 32 32 H 1.08994 * 109.58808 * 294.84899 * 5 4 2 33 33 H 1.09005 * 109.70441 * 174.49152 * 5 4 2 34 34 H 1.09001 * 109.47165 * 299.99721 * 10 7 6 35 35 H 1.09005 * 109.47549 * 59.99883 * 10 7 6 36 36 H 1.08996 * 109.46923 * 59.99492 * 12 11 10 37 37 H 1.08998 * 109.47012 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.46928 * 299.99962 * 12 11 10 39 39 H 1.09001 * 109.47000 * 59.99988 * 13 11 10 40 40 H 1.08997 * 109.47446 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47200 * 300.00137 * 13 11 10 42 42 H 0.97005 * 119.99458 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.58269 * 293.81818 * 22 6 5 44 44 H 1.08999 * 109.70300 * 173.46513 * 22 6 5 45 45 H 1.09002 * 109.47153 * 55.16112 * 25 23 2 46 46 H 1.09001 * 109.46832 * 295.16303 * 25 23 2 47 47 H 0.96701 * 113.99881 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2487 0.0002 7 16 5.1667 -2.4878 0.0004 8 8 5.8519 -2.3486 -1.2367 9 8 5.8521 -2.3482 1.2372 10 6 4.1527 -3.9919 0.0008 11 6 5.0637 -5.2211 0.0004 12 6 5.9464 -5.2013 -1.2493 13 6 5.9474 -5.2014 1.2492 14 6 4.2214 -6.4707 0.0001 15 1 3.1440 -6.3957 0.0006 16 6 4.8262 -7.7097 0.0002 17 7 6.1382 -7.8011 0.0001 18 14 3.7821 -9.2587 0.0006 19 1 2.9247 -9.2780 -1.2117 20 1 4.6663 -10.4517 0.0001 21 1 2.9251 -9.2776 1.2133 22 6 3.5713 -0.6884 1.2644 23 6 2.0398 -0.7206 1.2502 24 1 1.6978 -1.7556 1.2391 25 6 1.5026 -0.0187 2.4990 26 8 1.8852 -0.7561 3.6617 27 1 -0.3634 0.5144 0.8895 28 1 -0.3633 0.5132 -0.8904 29 1 -0.3633 -1.0277 0.0005 30 1 1.6573 -0.2209 -2.1398 31 1 1.6979 -1.7557 -1.2381 32 1 3.9143 0.3409 -1.3672 33 1 3.9439 -1.2831 -2.0983 34 1 3.5237 -4.0058 0.8909 35 1 3.5234 -4.0062 -0.8891 36 1 6.5556 -4.2975 -1.2495 37 1 6.5951 -6.0773 -1.2498 38 1 5.3168 -5.2154 -2.1390 39 1 5.3186 -5.2155 2.1395 40 1 6.5968 -6.0768 1.2487 41 1 6.5567 -4.2976 1.2490 42 1 6.5636 -8.6728 0.0006 43 1 3.9142 0.3411 1.3674 44 1 3.9415 -1.2822 2.1001 45 1 0.4153 0.0367 2.4454 46 1 1.9154 0.9886 2.5555 47 1 1.5776 -0.3682 4.4923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598625115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:18 Heat of formation + Delta-G solvation = -135.350732 kcal Electronic energy + Delta-G solvation = -27376.120306 eV Core-core repulsion = 23685.630716 eV Total energy + Delta-G solvation = -3690.489590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.38523 -36.68166 -36.48595 -36.22033 -35.25488 -33.93802 -31.62814 -31.61216 -28.05444 -26.59996 -25.96851 -25.67362 -25.18750 -22.74978 -22.11809 -20.15353 -19.28504 -18.42546 -17.51579 -17.29932 -16.07579 -15.93246 -15.38823 -14.98920 -14.79257 -14.65403 -14.45894 -14.20142 -13.89931 -13.64948 -13.04681 -12.96538 -12.90791 -12.48777 -12.45562 -12.18367 -12.06402 -11.78545 -11.68204 -11.41472 -11.16562 -11.08359 -11.01843 -10.98360 -10.90036 -10.66368 -10.47220 -10.43102 -10.34073 -10.22700 -10.09302 -10.03500 -9.60820 -9.50100 -8.86009 -8.56736 -8.36580 -5.99867 -4.11701 0.89903 3.14084 3.29112 3.34383 3.36152 3.98716 4.36490 4.43650 4.52040 4.59102 4.67230 4.73623 4.90317 5.05185 5.13958 5.24848 5.26172 5.30055 5.37973 5.45864 5.48365 5.56286 5.68620 5.71617 5.76030 5.80632 5.83062 5.93444 6.01196 6.02726 6.28254 6.31123 6.44352 6.75287 6.76307 6.84242 6.95261 7.08844 7.35755 7.48532 7.54704 7.71034 8.01814 8.13401 8.36969 8.86392 9.53336 11.01410 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.004424 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.890539 B = 6327.932211 C = 6782.858499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.073 0.927 4 C -0.131 4.131 5 C 0.120 3.880 6 N -1.009 6.009 7 S 2.593 3.407 8 O -0.964 6.964 9 O -0.961 6.961 10 C -0.581 4.581 11 C 0.082 3.918 12 C -0.163 4.163 13 C -0.163 4.163 14 C -0.501 4.501 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.132 3.868 23 C -0.102 4.102 24 H 0.086 0.914 25 C 0.079 3.921 26 O -0.569 6.569 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.027 0.973 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 17.294 1.344 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.170 4.170 5 C -0.006 4.006 6 N -0.844 5.844 7 S 2.692 3.308 8 O -0.954 6.954 9 O -0.952 6.952 10 C -0.715 4.715 11 C 0.080 3.920 12 C -0.220 4.220 13 C -0.221 4.221 14 C -0.540 4.540 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C 0.006 3.994 23 C -0.122 4.122 24 H 0.104 0.896 25 C 0.001 3.999 26 O -0.374 6.374 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.046 0.954 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.626 16.931 0.877 19.496 hybrid contribution -1.631 -0.757 0.409 1.844 sum -11.257 16.174 1.286 19.748 Atomic orbital electron populations 1.21938 0.95090 1.02247 1.01603 1.21025 0.95476 0.99466 0.94082 0.90904 1.22011 0.95735 1.01726 0.97555 1.21361 0.93639 0.99933 0.85623 1.58047 1.63344 1.51971 1.11081 1.05729 0.75338 0.75537 0.74198 1.93525 1.70765 1.85687 1.45441 1.93533 1.70710 1.85581 1.45332 1.30567 1.14080 1.17239 1.09575 1.17923 0.91240 0.89445 0.93408 1.22268 1.00322 1.02067 0.97391 1.22265 1.00323 1.02040 0.97443 1.20904 0.92451 0.89374 1.51299 0.92425 1.24933 0.95027 0.98913 0.94842 1.69799 1.08089 1.24291 1.50042 0.86605 0.80111 0.82389 0.78556 1.20316 1.21180 1.20285 1.21322 0.92553 0.99947 0.85571 1.21606 0.96304 1.01364 0.92909 0.89567 1.22276 0.98129 0.94091 0.85414 1.86553 1.80304 1.54210 1.16355 0.92544 0.92522 0.92326 0.90602 0.90992 0.91519 0.88985 0.86475 0.86619 0.95412 0.88676 0.94548 0.94459 0.88694 0.95420 0.92725 0.91775 0.88349 0.93049 0.93638 0.77537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.81 37.16 0.33 -0.79 16 2 C -0.08 -0.72 2.23 -90.58 -0.20 -0.93 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.28 5.36 -26.61 -0.14 -1.42 16 5 C 0.12 1.46 6.32 -3.72 -0.02 1.44 16 6 N -1.01 -15.06 3.22 -113.52 -0.37 -15.43 16 7 S 2.59 50.69 4.45 -107.50 -0.48 50.21 16 8 O -0.96 -20.77 14.34 -57.54 -0.83 -21.60 16 9 O -0.96 -21.20 14.35 -57.54 -0.83 -22.02 16 10 C -0.58 -11.85 5.12 37.16 0.19 -11.66 16 11 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 12 C -0.16 -4.10 7.77 37.16 0.29 -3.81 16 13 C -0.16 -4.15 7.78 37.16 0.29 -3.86 16 14 C -0.50 -13.42 8.01 -34.44 -0.28 -13.69 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.88 -24.50 9.35 55.43 0.52 -23.98 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 C 0.13 1.76 5.43 -3.71 -0.02 1.74 16 23 C -0.10 -1.10 2.12 -90.50 -0.19 -1.30 16 24 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 25 C 0.08 0.70 6.18 37.16 0.23 0.93 16 26 O -0.57 -5.95 13.30 -35.23 -0.47 -6.42 16 27 H 0.06 0.36 6.30 -51.93 -0.33 0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.18 7.09 -51.93 -0.37 0.81 16 34 H 0.12 2.24 8.14 -51.92 -0.42 1.81 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 36 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 37 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 41 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 1.51 6.94 -51.93 -0.36 1.15 16 45 H 0.05 0.38 6.15 -51.93 -0.32 0.06 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 2.13 9.12 45.56 0.42 2.54 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -33.08 361.23 -8.92 -42.00 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.19 Total: 5.60 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 0.30 Total: -29.72 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.15 Total: -39.41 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.12 Total: -50.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.48 Total: 50.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.08 -8.92 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598625115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.356 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds