Wall clock time and date at job start Tue Mar 31 2020 13:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.44533 * 2 1 4 4 C 1.53036 * 109.46433 * 240.02822 * 2 1 3 5 5 C 1.53189 * 109.31381 * 178.61241 * 4 2 1 6 6 N 1.46920 * 108.77579 * 54.63900 * 5 4 2 7 7 S 1.65608 * 120.63508 * 126.40912 * 6 5 4 8 8 O 1.42101 * 104.27205 * 26.05252 * 7 6 5 9 9 O 1.42091 * 104.27764 * 153.90826 * 7 6 5 10 10 C 1.81395 * 104.44948 * 269.97994 * 7 6 5 11 11 C 1.53001 * 109.47120 * 179.97438 * 10 7 6 12 12 C 1.53004 * 109.47173 * 300.00202 * 11 10 7 13 13 C 1.52998 * 109.47182 * 59.99988 * 11 10 7 14 14 C 1.50700 * 109.47274 * 180.02562 * 11 10 7 15 15 H 1.08000 * 120.00107 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99919 * 180.02562 * 14 11 10 17 17 N 1.31518 * 120.00043 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00015 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47209 * 59.99560 * 18 16 14 20 20 H 1.48496 * 109.47296 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46941 * 299.99751 * 18 16 14 22 22 C 1.46931 * 118.73768 * 306.39281 * 6 5 4 23 23 C 1.53040 * 109.45692 * 119.95885 * 2 1 3 24 24 H 1.09005 * 109.52522 * 61.42581 * 23 2 1 25 25 C 1.52997 * 109.50138 * 301.34039 * 23 2 1 26 26 O 1.42898 * 109.47319 * 175.16419 * 25 23 2 27 27 H 1.08994 * 109.47504 * 300.04080 * 1 2 3 28 28 H 1.09000 * 109.47158 * 60.04231 * 1 2 3 29 29 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.49877 * 58.66323 * 4 2 1 31 31 H 1.09001 * 109.49912 * 298.56814 * 4 2 1 32 32 H 1.08994 * 109.58808 * 294.84899 * 5 4 2 33 33 H 1.09005 * 109.70441 * 174.49152 * 5 4 2 34 34 H 1.09001 * 109.47165 * 299.99721 * 10 7 6 35 35 H 1.09005 * 109.47549 * 59.99883 * 10 7 6 36 36 H 1.08996 * 109.46923 * 59.99492 * 12 11 10 37 37 H 1.08998 * 109.47012 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.46928 * 299.99962 * 12 11 10 39 39 H 1.09001 * 109.47000 * 59.99988 * 13 11 10 40 40 H 1.08997 * 109.47446 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47200 * 300.00137 * 13 11 10 42 42 H 0.97005 * 119.99458 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.58269 * 293.81818 * 22 6 5 44 44 H 1.08999 * 109.70300 * 173.46513 * 22 6 5 45 45 H 1.09002 * 109.47153 * 55.16112 * 25 23 2 46 46 H 1.09001 * 109.46832 * 295.16303 * 25 23 2 47 47 H 0.96701 * 113.99881 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2487 0.0002 7 16 5.1667 -2.4878 0.0004 8 8 5.8519 -2.3486 -1.2367 9 8 5.8521 -2.3482 1.2372 10 6 4.1527 -3.9919 0.0008 11 6 5.0637 -5.2211 0.0004 12 6 5.9464 -5.2013 -1.2493 13 6 5.9474 -5.2014 1.2492 14 6 4.2214 -6.4707 0.0001 15 1 3.1440 -6.3957 0.0006 16 6 4.8262 -7.7097 0.0002 17 7 6.1382 -7.8011 0.0001 18 14 3.7821 -9.2587 0.0006 19 1 2.9247 -9.2780 -1.2117 20 1 4.6663 -10.4517 0.0001 21 1 2.9251 -9.2776 1.2133 22 6 3.5713 -0.6884 1.2644 23 6 2.0398 -0.7206 1.2502 24 1 1.6978 -1.7556 1.2391 25 6 1.5026 -0.0187 2.4990 26 8 1.8852 -0.7561 3.6617 27 1 -0.3634 0.5144 0.8895 28 1 -0.3633 0.5132 -0.8904 29 1 -0.3633 -1.0277 0.0005 30 1 1.6573 -0.2209 -2.1398 31 1 1.6979 -1.7557 -1.2381 32 1 3.9143 0.3409 -1.3672 33 1 3.9439 -1.2831 -2.0983 34 1 3.5237 -4.0058 0.8909 35 1 3.5234 -4.0062 -0.8891 36 1 6.5556 -4.2975 -1.2495 37 1 6.5951 -6.0773 -1.2498 38 1 5.3168 -5.2154 -2.1390 39 1 5.3186 -5.2155 2.1395 40 1 6.5968 -6.0768 1.2487 41 1 6.5567 -4.2976 1.2490 42 1 6.5636 -8.6728 0.0006 43 1 3.9142 0.3411 1.3674 44 1 3.9415 -1.2822 2.1001 45 1 0.4153 0.0367 2.4454 46 1 1.9154 0.9886 2.5555 47 1 1.5776 -0.3682 4.4923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598625115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:18 Heat of formation + Delta-G solvation = -159.316545 kcal Electronic energy + Delta-G solvation = -27377.159542 eV Core-core repulsion = 23685.630716 eV Total energy + Delta-G solvation = -3691.528826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.23862 -38.21467 -38.15534 -37.38310 -36.91942 -34.86359 -33.64449 -32.48844 -28.88639 -28.31226 -27.72567 -27.26742 -26.81890 -23.65338 -22.95364 -21.39770 -20.79220 -19.80730 -18.80501 -18.21620 -17.90298 -17.31020 -16.97404 -16.68135 -16.10727 -15.49974 -15.46804 -15.12144 -14.93341 -14.85871 -14.64162 -14.53841 -14.44601 -13.96744 -13.74799 -13.39933 -13.22562 -12.97457 -12.95927 -12.88176 -12.82126 -12.62975 -12.53399 -12.48362 -12.20473 -12.18376 -12.01522 -11.99242 -11.80457 -11.59952 -11.42215 -11.26937 -11.15198 -10.78688 -10.60532 -10.42807 -9.87598 -8.04202 -6.23255 -0.65293 1.43915 1.44401 1.51973 1.76944 2.43163 2.87268 3.16383 3.21130 3.33688 3.69270 3.82435 3.83821 4.00669 4.04223 4.16437 4.29929 4.35108 4.52185 4.54710 4.56830 4.65139 4.74209 4.76133 4.78770 4.82894 4.83180 4.92194 4.95168 4.97374 5.04467 5.05250 5.18580 5.20937 5.28356 5.34779 5.46850 5.47557 5.58016 5.62017 5.69609 5.93874 6.08512 6.32140 6.80494 7.00924 7.44794 8.95668 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.004424 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.890539 B = 6327.932211 C = 6782.858499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 H 0.089 0.911 4 C -0.129 4.129 5 C 0.109 3.891 6 N -1.001 6.001 7 S 2.608 3.392 8 O -0.986 6.986 9 O -0.991 6.991 10 C -0.584 4.584 11 C 0.069 3.931 12 C -0.157 4.157 13 C -0.158 4.158 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.018 3.982 17 N -0.908 5.908 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.125 3.875 23 C -0.102 4.102 24 H 0.065 0.935 25 C 0.079 3.921 26 O -0.599 6.599 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 19.102 1.031 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.108 0.892 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.839 5.839 7 S 2.707 3.293 8 O -0.977 6.977 9 O -0.981 6.981 10 C -0.716 4.716 11 C 0.067 3.933 12 C -0.215 4.215 13 C -0.216 4.216 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.181 4.181 17 N -0.546 5.546 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.000 4.000 23 C -0.122 4.122 24 H 0.084 0.916 25 C 0.001 3.999 26 O -0.407 6.407 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.064 18.736 0.572 22.291 hybrid contribution -0.873 -1.237 0.523 1.602 sum -12.937 17.499 1.095 21.789 Atomic orbital electron populations 1.21909 0.93684 1.02009 1.02917 1.21026 0.96542 0.99744 0.92270 0.89224 1.22040 0.93648 1.01779 0.99365 1.21700 0.95536 1.00579 0.83731 1.57693 1.62877 1.50350 1.12997 1.04922 0.75539 0.75793 0.73038 1.93485 1.71896 1.86069 1.46201 1.93486 1.72063 1.86040 1.46505 1.30495 1.13816 1.16381 1.10902 1.17923 0.91657 0.91099 0.92574 1.22182 1.00202 1.01124 0.97998 1.22188 1.00204 1.01101 0.98079 1.21235 0.92833 0.90424 1.51313 0.92149 1.25685 0.96062 1.01786 0.94581 1.69939 1.09413 1.24771 1.50507 0.85656 0.78639 0.78849 0.78748 1.19583 1.21068 1.19826 1.21513 0.94554 1.00117 0.83787 1.21627 0.94210 1.01037 0.95329 0.91601 1.22351 0.99269 0.94266 0.84003 1.86506 1.80927 1.55439 1.17851 0.91289 0.91202 0.93348 0.87921 0.92038 0.89401 0.89914 0.85606 0.84906 0.95043 0.90936 0.94046 0.94484 0.90875 0.95107 0.92841 0.89870 0.90886 0.91075 0.91804 0.75375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.81 71.98 0.63 -1.03 16 2 C -0.08 -1.11 2.23 -10.77 -0.02 -1.14 16 3 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 4 C -0.13 -2.16 5.36 30.67 0.16 -1.99 16 5 C 0.11 2.43 6.32 86.36 0.55 2.98 16 6 N -1.00 -28.84 3.22 -513.08 -1.65 -30.49 16 7 S 2.61 102.29 4.45 -56.49 -0.25 102.04 16 8 O -0.99 -42.59 14.34 -127.65 -1.83 -44.43 16 9 O -0.99 -44.39 14.35 -127.65 -1.83 -46.23 16 10 C -0.58 -23.85 5.12 71.98 0.37 -23.48 16 11 C 0.07 3.51 0.52 -52.93 -0.03 3.48 16 12 C -0.16 -8.07 7.77 71.98 0.56 -7.51 16 13 C -0.16 -8.26 7.78 71.98 0.56 -7.70 16 14 C -0.52 -27.95 8.01 25.60 0.21 -27.74 16 15 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 16 C 0.02 0.99 5.15 84.65 0.44 1.43 16 17 N -0.91 -51.32 9.35 21.45 0.20 -51.12 16 18 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C 0.13 3.19 5.43 86.36 0.47 3.66 16 23 C -0.10 -2.01 2.12 -10.72 -0.02 -2.03 16 24 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 25 C 0.08 1.20 6.18 71.98 0.45 1.64 16 26 O -0.60 -11.66 13.30 -148.98 -1.98 -13.64 16 27 H 0.07 0.61 6.30 -2.39 -0.02 0.60 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.01 7.09 -2.38 -0.02 2.00 16 34 H 0.13 4.84 8.14 -2.39 -0.02 4.82 16 35 H 0.13 4.86 8.14 -2.39 -0.02 4.84 16 36 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 37 H 0.07 4.03 6.07 -2.39 -0.01 4.02 16 38 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 4.12 6.07 -2.39 -0.01 4.10 16 41 H 0.03 1.54 5.47 -2.39 -0.01 1.53 16 42 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.25 6.94 -2.39 -0.02 2.23 16 45 H 0.07 0.80 6.15 -2.39 -0.01 0.79 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.40 3.82 9.12 -74.06 -0.68 3.15 16 Total: -1.00 -71.79 361.23 -0.73 -72.52 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.28 Total: 25.82 kcal Atomic # 6 Polarization: -63.75 SS G_CDS: 4.31 Total: -59.44 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.45 Total: -81.61 kcal Atomic # 8 Polarization: -98.65 SS G_CDS: -5.64 Total: -104.29 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 102.29 SS G_CDS: -0.25 Total: 102.04 kcal Total: -71.79 -0.73 -72.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598625115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.799 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds